Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

9425565 .. 9426651

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTTGACTCGGAAGGACAGGGGCGCGAAGAAGCACTAGTACGCCGAGAGGCTCTCGACGCTTCTGCAAGTTCCGCACATTTCTATGGATCCCTCGTCCGCCAGGAGCTCAACTCTCGCTCTTCTCTTTACAAGCAGATTGCAAATGCAGGGAAGCTTGTTCCGGACGAAGTGATATTTGCGTTGTTGTCGAAGAGGTTGGAAGAAGGATACTATTGCGGCGAAAACGGATTCATTCTCGATGGGATTCCTCGAACAAGAACTCAAGAAACAACAACACAAGCTGAGATTGTTGACCAAATTGCTGATATTGATTTAGTGGTGAATTTTAAATGCACAAATGAGTTAGGAACCGCAAACTTCTCTGCTTGCCGAGAATATCTTAGCATGGCAACCATGTCGCTGGAAGATTACTACAGAAAACAGCACGAACTCATCGATTTTCAGGTCCAATCCGCACCCGGAGAAACCTGGCAGGGGCTGTTGGCTGCTTTACATCTTCAGCATATAAATGCTGTCAATTCTTCCCTGAAGCTCACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

4.9

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_17	PF13207	29 - 115	1.8e-07	AAA domain
ADK	PF00406	30 - 148	6.3e-15	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	5 cut(s)	75, 100, 219, 354, 456
AclWI	GGATC	2 cut(s)	84, 97
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	477
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	102, 470
AluBI	AGCT	4 cut(s)	109, 157, 284, 535
AluI	AGCT	4 cut(s)	109, 157, 284, 535
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	84, 97
AlwNI	CAGNNNCTG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	4 cut(s)	47, 81, 381, 415
BciT130I	CCWGG	2 cut(s)	104, 472
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	220, 489
BlsI	GCNGC	2 cut(s)	221, 490
Bme1390I	CCNGG	3 cut(s)	104, 462, 472
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	91, 352
BmrFI	CCNGG	3 cut(s)	104, 462, 472
BplI	GAGNNNNNCTC	4 cut(s)	39, 71, 98, 130
BpuEI	CTTGAG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	104, 472
BseCI	ATCGAT	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	164, 462
BslI	CCNNNNNNNGG	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	5 cut(s)	75, 100, 219, 354, 456
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	91, 352
BspPI	GGATC	2 cut(s)	84, 97
BspQI	GCTCTTC	1 cut(s)	127
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	104, 472
Bst6I	CTCTTC	2 cut(s)	127, 188
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	285, 383
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 74
BstNI	CCWGG	2 cut(s)	104, 472
BstSCI	CCNGG	3 cut(s)	102, 460, 470
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	481
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	388, 397
CviJI	RGCY	7 cut(s)	53, 109, 157, 284, 481, 488, 535
CviKI_1	RGCY	7 cut(s)	53, 109, 157, 284, 481, 488, 535
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	285, 383
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraI	TTTAAA	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	127, 188
EarI	CTCTTC	2 cut(s)	127, 188
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	102, 470
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	2 cut(s)	391, 400
FaiI	YATR	5 cut(s)	87, 389, 398, 507, 509
FatI	CATG	2 cut(s)	387, 396
Fnu4HI	GCNGC	2 cut(s)	220, 489
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	220, 489
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	220, 489
HapII	CCGG	2 cut(s)	164, 462
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	391, 400
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	3 cut(s)	8, 231, 247
HpaII	CCGG	2 cut(s)	164, 462
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	4 cut(s)	56, 164, 239, 266
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	8, 200
HpyCH4V	TGCA	4 cut(s)	68, 143, 149, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 74
HpyF3I	CTNAG	2 cut(s)	285, 383
Hsp92II	CATG	2 cut(s)	391, 400
HspAI	GCGC	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	89
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	38
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	7 cut(s)	41, 114, 205, 215, 419, 491, 516
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	300, 325, 520
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	43, 104, 189, 261
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	84, 510
MspI	CCGG	2 cut(s)	164, 462
MspR9I	CCNGG	3 cut(s)	104, 462, 472
MvaI	CCWGG	2 cut(s)	104, 472
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	59, 74
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	391, 400
NlaIV	GGNNCC	2 cut(s)	91, 352
NmeAIII	GCCGAG	2 cut(s)	71, 398
PciSI	GCTCTTC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	231, 247
PkrI	GCNGC	2 cut(s)	221, 490
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	102, 470
PspGI	CCWGG	2 cut(s)	102, 470
PspN4I	GGNNCC	2 cut(s)	91, 352
PspPI	GGNCC	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	84, 510
SacI	GAGCTC	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	220, 489
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	3 cut(s)	104, 462, 472
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	7 cut(s)	111, 159, 200, 286, 450, 473, 537
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	84, 510
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	3 cut(s)	300, 325, 520
SsiI	CCGC	5 cut(s)	75, 100, 219, 354, 456
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	102, 460, 470
TaqI	TCGA	5 cut(s)	57, 191, 240, 253, 438
TasI	AATT	3 cut(s)	300, 325, 520
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	231, 247
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.