Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

8946842 .. 8949171

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATCAAACTACGCCCTTTAATTTCCCCTGCCGCCGCCGTAACCGCCGCGCCGCCTCTACTCCGTCTTCTGCGGCTCACCCTGAGCCGACTCTCCTCCTCCTCCTCCTCCGCCGCCGCGGCTCAGCCGATTCTCGATTACGACTACTACCAGCTCCACCACGCGCCGCCACGCGATCAAGCTCCGTTGGCCGACGCGGCGGGCTCGGTTCCCGTGAGGGGAGTGCGGTGGGCGTTCATAGGGAGCCCAATCGCCAAGAGGCACGTCTACGCCGAGAGAATCTCCAAGCTTCTTCAAATTCCTCACATTTCCATGGCCACCCTCGTCCGTCAAGACCTTCACCCTCACTCCTCTCTCTACAACCAGATTGCGAATGCCGTGAATCGGGGGGAGATTGTGGCAGAGGAGGATATACTATTAGGGTTGTTGTCAAAGAGATTGGAAGATGGATATTGGAGAGGAGAGAGTGGATTTATACTGGATGGAATTCCTCGTTCCAAGATCCAAGCTGAAATTCTTTCACAACGGGTTGAGATTGATCTAGTGGTGAATTTCAAATGCACAGAACATTGCTTGGTGAAACACAAAAGAGGTAATATCTATTATTTCATTGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

206

Amino Acids

22.89

Weight (kDa)

9.45

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	80 - 194	6.7e-16	Adenylate kinase
AAA_17	PF13207	91 - 191	4.7e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	5 cut(s)	50, 119, 164, 174, 197
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	189, 315
AcsI	RAATTY	4 cut(s)	297, 486, 513, 550
AfiI	CCNNNNNNNGG	2 cut(s)	218, 384
AgsI	TTSAA	2 cut(s)	296, 556
AjiI	CACGTC	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	154, 182, 289, 509
AluI	AGCT	4 cut(s)	154, 182, 289, 509
AlwI	GGATC	1 cut(s)	496
AoxI	GGCC	2 cut(s)	189, 315
ApoI	RAATTY	4 cut(s)	297, 486, 513, 550
AspLEI	GCGC	2 cut(s)	52, 166
AsuHPI	GGTGA	4 cut(s)	70, 332, 559, 589
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	206, 248
BbsI	GAAGAC	1 cut(s)	59
BccI	CCATC	2 cut(s)	440, 476
BceAI	ACGGC	2 cut(s)	23, 362
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	542
BglI	GCCNNNNNGGC	2 cut(s)	119, 197
BlpI	GCTNAGC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	210, 245
BpiI	GAAGAC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	117, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 384
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	2 cut(s)	568, 609
BseDI	CCNNGG	2 cut(s)	117, 312
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	218, 384
BseMI	GCAATG	2 cut(s)	568, 609
BseMII	CTCAG	2 cut(s)	74, 137
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	8 cut(s)	85, 88, 91, 94, 97, 340, 419, 474
Bsh1236I	CGCG	5 cut(s)	50, 119, 164, 174, 197
BshFI	GGCC	2 cut(s)	191, 317
BslI	CCNNNNNNNGG	2 cut(s)	218, 384
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	191, 317
Bsp1286I	GDGCHC	2 cut(s)	206, 248
Bsp143I	GATC	4 cut(s)	3, 175, 501, 538
Bsp1720I	GCTNAGC	1 cut(s)	123
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	2 cut(s)	191, 317
BspCNI	CTCAG	2 cut(s)	75, 136
BspFNI	CGCG	5 cut(s)	50, 119, 164, 174, 197
BspLI	GGNNCC	2 cut(s)	210, 245
BspPI	GGATC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	568, 609
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	2 cut(s)	117, 312
BssMI	GATC	4 cut(s)	3, 175, 501, 538
BssT1I	CCWWGG	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	83, 123
BstDSI	CCRYGG	2 cut(s)	117, 312
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	5 cut(s)	50, 119, 164, 174, 197
BstHHI	GCGC	2 cut(s)	52, 166
BstKTI	GATC	4 cut(s)	6, 178, 504, 541
BstMBI	GATC	4 cut(s)	3, 175, 501, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 119, 188, 197
BstUI	CGCG	5 cut(s)	50, 119, 164, 174, 197
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	191, 317
BtgI	CCRYGG	2 cut(s)	117, 312
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	2 cut(s)	52, 166
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	83, 123
DpnI	GATC	4 cut(s)	5, 177, 503, 540
DpnII	GATC	4 cut(s)	3, 175, 501, 538
EaeI	YGGCCR	2 cut(s)	189, 315
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	206, 248
EcoRI	GAATTC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	206, 248
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	239, 314, 413, 476
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	2 cut(s)	206, 248
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	2 cut(s)	51, 165
HaeIII	GGCC	2 cut(s)	191, 317
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	52, 166
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	50, 164
HinP1I	GCGC	2 cut(s)	50, 164
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	90, 130, 279, 382
HphI	GGTGA	4 cut(s)	70, 332, 559, 589
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	134, 332
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	561, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 119, 188, 197
HpyF3I	CTNAG	2 cut(s)	83, 123
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	50, 164
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	3, 175, 501, 538
LmnI	GCTCC	3 cut(s)	159, 187, 243
LpnPI	CCDG	5 cut(s)	42, 95, 164, 377, 464
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	4 cut(s)	5, 177, 503, 540
MboI	GATC	4 cut(s)	3, 175, 501, 538
MboII	GAAGA	3 cut(s)	59, 284, 455
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	206, 248
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	5 cut(s)	21, 297, 486, 513, 550
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	5 cut(s)	50, 119, 164, 174, 197
MwoI	GCNNNNNNNGC	4 cut(s)	44, 119, 188, 197
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	3, 175, 501, 538
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	210, 245
NmeAIII	GCCGAG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	130, 279, 382
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	210, 245
PsuI	RGATCY	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	311
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	4 cut(s)	3, 175, 501, 538
SchI	GAGTC	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	206, 248
SetI	ASST	7 cut(s)	156, 184, 267, 291, 339, 511, 595
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	21, 297, 486, 513, 550
SspMI	CTAG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	21, 297, 486, 513, 550
TfiI	GAWTC	3 cut(s)	130, 279, 382
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	226, 598
TspGWI	ACGGA	3 cut(s)	53, 174, 317
XapI	RAATTY	4 cut(s)	297, 486, 513, 550
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.