Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

56898087 .. 56901401

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTCCCCAGGTTCCATTCCACAGAGTATGGTTTCATTGACATTCTTGAATCATCTAAACCTCTCATACAACAACTTGTCTGGGACAATCCCAACAGGCAACCAGTTTAACAGCCTGGTTGATCCATCAATATATGAAGGCAATGCCGCTCTTTGTGGTTATCCGTTGCCTGATTGCCAAGTCAATGGCGGAATTCCTCAGGGTCCAAGTCATGAAGGTGGAGAAGACACTGGCTTTAAAATGTGGGGTTTCATCATCAGCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

89

Amino Acids

9.46

Weight (kDa)

4.33

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	2 cut(s)	147, 189
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	7, 114
AlwI	GGATC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	9, 116
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	9, 116
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	13, 204
BmrFI	CCNGG	2 cut(s)	9, 116
BpiI	GAAGAC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	103, 235
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	9, 116
BseDI	CCNNGG	1 cut(s)	7
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	103, 235
BslFI	GGGAC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	147, 189
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	13, 204
BspPI	GGATC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	103, 235
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	9, 116
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	9, 116
BstSCI	CCNGG	2 cut(s)	7, 114
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	228
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	2 cut(s)	212, 262
CviJI	RGCY	2 cut(s)	114, 234
CviKI_1	RGCY	2 cut(s)	114, 234
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraI	TTTAAA	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	7, 114
FaeI	CATG	2 cut(s)	215, 265
FaiI	YATR	6 cut(s)	29, 67, 133, 135, 213, 263
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	211, 261
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	215, 265
HinfI	GANTC	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	46, 212
HpyAV	CCTTC	2 cut(s)	131, 209
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	215, 265
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	21, 66, 81, 101, 116, 128, 183, 185, 216
MalI	GATC	1 cut(s)	123
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	2 cut(s)	71, 207
MseI	TTAA	2 cut(s)	108, 237
MslI	CAYNNNNRTG	2 cut(s)	216, 260
MspR9I	CCNGG	2 cut(s)	9, 116
MvaI	CCWGG	2 cut(s)	9, 116
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	215, 265
NlaIV	GGNNCC	2 cut(s)	13, 204
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	7, 114
PspGI	CCWGG	2 cut(s)	7, 114
PspN4I	GGNNCC	2 cut(s)	13, 204
PspPI	GGNCC	1 cut(s)	203
RseI	CAYNNNNRTG	2 cut(s)	216, 260
SaqAI	TTAA	2 cut(s)	108, 237
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	9, 116
SetI	ASST	3 cut(s)	13, 63, 220
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	216, 260
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	147, 189
StyD4I	CCNGG	2 cut(s)	7, 114
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	108, 237
Tru9I	TTAA	2 cut(s)	108, 237
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	24, 150, 228, 241
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.