Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

61711291 .. 61715728

Gene Structure 4438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTGGTCTTTGTGGCTATCCTTTACAAACTCTTTGCCGAGATAATGAAGAAACACCTCAGGTTCCAAGTGAAGATGGAGAAGGAGATGATGGTAAATCTGAAAAGGTTTAGAGGTGCGAAGAAGCACGTGTACGTCGAGAGGCTCTCGAAGCTTCCAGAAGTTCCCCGCGTCCGCCAGAGCTCAACCCTTACTCTTCTCTCCAAGTTGTTGGAGGATTACTACGTAAAACAGAACAAACTCATCGATTTTCATGTGAAAGGTGCCCCCGGAGAAACCCGGAAGGGGCTACCGGCTGCATTGCATCTCCGGCATATAAATGCTGTCGTTCTTTCCGAAGCTAACTGCATGATTAGGTTGCATCCGGCTCTTCTTTTGACCTCATTATTCTTTAGCATTCGGCGATATAGTATAGATATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

141

Amino Acids

16.48

Weight (kDa)

10.22

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	169, 175
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	129
AluBI	AGCT	3 cut(s)	154, 183, 341
AluI	AGCT	3 cut(s)	154, 183, 341
Alw21I	GWGCWC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	270, 280
AxyI	CCTNAGG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	70, 85
BcnI	CCSGG	2 cut(s)	270, 280
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	2 cut(s)	270, 280
BmiI	GGNNCC	2 cut(s)	65, 265
BmrFI	CCNGG	2 cut(s)	270, 280
BmsI	GCATC	2 cut(s)	313, 370
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpuMI	CCSGG	2 cut(s)	270, 280
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	2 cut(s)	130, 226
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	270, 280, 293, 310, 365
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	185, 268
BspACI	CCGC	2 cut(s)	169, 175
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	65, 265
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	201, 375
BstBAI	YACGTR	2 cut(s)	130, 226
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 310
BstSCI	CCNGG	2 cut(s)	268, 278
BstSLI	GKGCMC	1 cut(s)	268
BstSNI	TACGTA	1 cut(s)	226
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	2 cut(s)	254, 349
CviJI	RGCY	8 cut(s)	17, 145, 154, 183, 289, 296, 341, 368
CviKI_1	RGCY	8 cut(s)	17, 145, 154, 183, 289, 296, 341, 368
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	201, 375
EarI	CTCTTC	2 cut(s)	201, 375
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	2 cut(s)	257, 352
FaiI	YATR	8 cut(s)	255, 315, 317, 350, 408, 413, 419, 424
FatI	CATG	2 cut(s)	253, 348
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
HapII	CCGG	5 cut(s)	270, 280, 293, 310, 365
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	257, 352
HindIII	AAGCTT	1 cut(s)	152
HpaII	CCGG	5 cut(s)	270, 280, 293, 310, 365
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	102, 337
Hpy188III	TCNNGA	3 cut(s)	139, 148, 158
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	76, 277
HpyCH4IV	ACGT	3 cut(s)	129, 135, 225
HpyCH4V	TGCA	4 cut(s)	299, 304, 348, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 310
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	3 cut(s)	129, 135, 225
Hsp92II	CATG	2 cut(s)	257, 352
LguI	GCTCTTC	1 cut(s)	375
LpnPI	CCDG	8 cut(s)	46, 171, 191, 283, 293, 306, 323, 378
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	313, 370
MaeII	ACGT	3 cut(s)	129, 135, 225
MboII	GAAGA	5 cut(s)	61, 85, 133, 188, 362
MhlI	GDGCHC	2 cut(s)	185, 268
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	68, 107, 135, 208, 391
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	5 cut(s)	270, 280, 293, 310, 365
MspR9I	CCNGG	2 cut(s)	270, 280
Mva1269I	GAATGC	1 cut(s)	396
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	151, 310
NciI	CCSGG	2 cut(s)	270, 280
NlaIII	CATG	2 cut(s)	257, 352
NlaIV	GGNNCC	2 cut(s)	65, 265
NmeAIII	GCCGAG	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 333
PctI	GAATGC	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	298
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
Ppu21I	YACGTR	2 cut(s)	130, 226
Psp124BI	GAGCTC	1 cut(s)	185
PspCI	CACGTG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	65, 265
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	270, 280
SduI	GDGCHC	2 cut(s)	185, 268
SfaNI	GCATC	2 cut(s)	313, 370
SmiMI	CAYNNNNRTG	1 cut(s)	318
SnaBI	TACGTA	1 cut(s)	226
SsiI	CCGC	2 cut(s)	169, 175
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	268, 278
TaiI	ACGT	3 cut(s)	132, 138, 228
TaqI	TCGA	3 cut(s)	138, 149, 246
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	62, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.