Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Forward (+)

82590693 .. 82591914

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAACGAACTTTCGGGTTCCATTCCACAGAGTATGGTTTCTTTGACATTCGTGACTCATCTAAACCTGTCACACAACAACTTATCCTGGAAAATCCCAACAAGCAACCAGTTCAACAGGTTGATTGATCCATCAATTTATCAAGGCAATGCTGGTCTTTGTGGTAGTCCGTTACCAACTCCTTGCCAAGACAATGAAGAAACACCTCAGGTCCCAAGTGAAGATGGAGAAGGAGATGACGGTAAATCTGAAAAGGTTTATTCTATCTCCTACTATTGTATGAAAGAGTTTAGGAGTATATTGAGAGAGCGCCGGCCATGGCTAGACGTCTCTATACCTGACTACCTGCCTCCATTTCCGATGGAGAAAAATTCCGGCCCATCCCTTGGTGTCGCAGTTATTGGGTACAATTCAGGTTGTCCTTCCCGTTTTTCTTTTTTCTCTTTGAAGTTGAGATTGGGAGCTTTCCCTTCGTCTCATTTTGCTTCACATCAGGGTTTGAGGCTGAGCTCCGTTCGGCGACCAACTGAACTAGTGGTTGCTGGTGGTTGGATGATCTGGGACCCAGGACTTTTCATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

195

Amino Acids

21.54

Weight (kDa)

6.07

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	386
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	115, 448
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	86, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	464, 510
AluI	AGCT	2 cut(s)	464, 510
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	334, 480
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	314, 376
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	3 cut(s)	211, 377, 562
AvaII	GGWCC	2 cut(s)	211, 562
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	512
BccI	CCATC	4 cut(s)	139, 218, 355, 388
BciT130I	CCWGG	2 cut(s)	88, 567
BcoDI	GTCTC	2 cut(s)	334, 480
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	323, 533
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	354
BlpI	GCTNAGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	88, 567
Bme18I	GGWCC	2 cut(s)	211, 562
BmgT120I	GGNCC	3 cut(s)	211, 377, 562
BmiI	GGNNCC	4 cut(s)	19, 213, 563, 564
BmrFI	CCNGG	2 cut(s)	88, 567
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	317, 385, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	88, 567
BseDI	CCNNGG	3 cut(s)	317, 385, 565
BseGI	GGATG	2 cut(s)	380, 558
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	221, 497
BseNI	ACTGG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	316, 378
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	2 cut(s)	313, 375
BslFI	GGGAC	2 cut(s)	197, 575
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	334, 480
BsmBI	CGTCTC	2 cut(s)	334, 480
BsmFI	GGGAC	2 cut(s)	197, 575
BsnI	GGCC	2 cut(s)	316, 378
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	2 cut(s)	127, 555
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	2 cut(s)	316, 378
BspCNI	CTCAG	2 cut(s)	220, 498
BspLI	GGNNCC	4 cut(s)	19, 213, 563, 564
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	317, 385, 565
BssMI	GATC	2 cut(s)	127, 555
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	317, 385
Bst2UI	CCWGG	2 cut(s)	88, 567
Bst4CI	ACNGT	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	207, 506
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	380, 558
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	2 cut(s)	130, 558
BstMAI	GTCTC	2 cut(s)	334, 480
BstMBI	GATC	2 cut(s)	127, 555
BstNI	CCWGG	2 cut(s)	88, 567
BstSCI	CCNGG	2 cut(s)	86, 565
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	316, 378
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	380, 558
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	3 cut(s)	211, 377, 562
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	6 cut(s)	316, 322, 378, 464, 505, 510
CviKI_1	RGCY	6 cut(s)	316, 322, 378, 464, 505, 510
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	207, 506
DpnI	GATC	2 cut(s)	129, 557
DpnII	GATC	2 cut(s)	127, 555
EaeI	YGGCCR	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	317, 385
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	211, 562
Eco53kI	GAGCTC	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	2 cut(s)	211, 562
EcoRII	CCWGG	2 cut(s)	86, 565
EcoT14I	CCWWGG	2 cut(s)	317, 385
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	317, 385
Esp3I	CGTCTC	2 cut(s)	334, 480
FaeI	CATG	1 cut(s)	321
FaiI	YATR	5 cut(s)	35, 281, 299, 319, 335
FaqI	GGGAC	2 cut(s)	197, 575
FatI	CATG	1 cut(s)	317
FokI	GGATG	2 cut(s)	367, 565
FriOI	GRGCYC	1 cut(s)	512
FspBI	CTAG	2 cut(s)	323, 533
GlaI	GCGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	316, 378
HapII	CCGG	2 cut(s)	313, 375
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	313, 375
Hpy188I	TCNGA	2 cut(s)	250, 360
Hpy188III	TCNNGA	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	224, 432, 480
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	327
HpyF3I	CTNAG	2 cut(s)	207, 506
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	310
KflI	GGGWCCC	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	127, 555
LmnI	GCTCC	2 cut(s)	461, 515
MaeI	CTAG	2 cut(s)	323, 533
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	52, 69, 171
MalI	GATC	2 cut(s)	129, 557
MboI	GATC	2 cut(s)	127, 555
MboII	GAAGA	2 cut(s)	209, 233
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	3 cut(s)	135, 370, 409
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	3 cut(s)	216, 360, 495
MroNI	GCCGGC	1 cut(s)	312
MspI	CCGG	2 cut(s)	313, 375
MspR9I	CCNGG	2 cut(s)	88, 567
MvaI	CCWGG	2 cut(s)	88, 567
NaeI	GCCGGC	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	127, 555
NgoMIV	GCCGGC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	4 cut(s)	19, 213, 563, 564
NmuCI	GTSAC	2 cut(s)	52, 69
PdiI	GCCGGC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	86
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	2 cut(s)	211, 562
Psp124BI	GAGCTC	1 cut(s)	512
Psp5II	RGGWCCY	2 cut(s)	211, 562
Psp6I	CCWGG	2 cut(s)	86, 565
PspGI	CCWGG	2 cut(s)	86, 565
PspN4I	GGNNCC	4 cut(s)	19, 213, 563, 564
PspPI	GGNCC	3 cut(s)	211, 377, 562
PspPPI	RGGWCCY	2 cut(s)	211, 562
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	512
Sau3AI	GATC	2 cut(s)	127, 555
Sau96I	GGNCC	3 cut(s)	211, 377, 562
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	88, 567
SduI	GDGCHC	1 cut(s)	512
SinI	GGWCC	2 cut(s)	211, 562
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	3 cut(s)	135, 370, 409
SspMI	CTAG	2 cut(s)	323, 533
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	86, 565
StyI	CCWWGG	2 cut(s)	317, 385
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	330
TasI	AATT	3 cut(s)	135, 370, 409
TseFI	GTSAC	2 cut(s)	52, 69
Tsp45I	GTSAC	2 cut(s)	52, 69
TspDTI	ATGAA	4 cut(s)	17, 210, 296, 565
TspGWI	ACGGA	2 cut(s)	159, 502
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	211, 562
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	2 cut(s)	323, 533
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.