Rmu_co7982852.1_g000001

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7982852.1
OG0001981
Physical Location & Seq
Forward (+)
1 .. 515
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7982852.1_g000001.1.cds

Sequence Viewer

Length: 349 bp
ccgcgccgagcctacggatcggccgccgcggctcagctggactattactccgacgaggaagaagagcatcaaacggcggtggtggactcggccgggtggatcccacggagagggatacattgggtgctgataggagatcgaggtgcgaagaagcacttgtacgccgagaggctctcgaagcttctggaagttccccacatttctatgggcaccctcgtccgccaggagctcaaccctcgctcttctctctacaagcagattgcgaatgcggtgaatgaaggaaagcttgttcaggatgaagtgattttcgcattgttgtcgaaaaggcttgaggaaggatactacagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

116

Amino Acids

13.21

Weight (kDa)

7.45

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccII CGCG 2 cut(s) 4, 29
AciI CCGC 7 cut(s) 2, 24, 27, 29, 77, 220, 269
AclWI GGATC 3 cut(s) 25, 94, 107
AcoI YGGCCR 2 cut(s) 21, 90
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 110
AjnI CCWGG 1 cut(s) 222
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 4 cut(s) 37, 181, 229, 286
AluI AGCT 4 cut(s) 37, 181, 229, 286
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 3 cut(s) 25, 94, 107
AoxI GGCC 2 cut(s) 21, 90
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
Bbv12I GWGCWC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 2 cut(s) 108, 332
BcnI CCSGG 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 343
BfuI GTATCC 2 cut(s) 108, 332
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 3 cut(s) 24, 27, 30
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 3 cut(s) 25, 28, 31
Bme1390I CCNGG 2 cut(s) 94, 224
BmiI GGNNCC 2 cut(s) 101, 211
BmrFI CCNGG 2 cut(s) 94, 224
BmsI GCATC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu1102I GCTNAGC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 27, 104
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 27, 104
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 212
BseX3I CGGCCG 2 cut(s) 21, 90
Bsh1236I CGCG 2 cut(s) 4, 29
Bsh1285I CGRYCG 2 cut(s) 24, 93
BshFI GGCC 2 cut(s) 23, 92
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 2 cut(s) 24, 93
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 110
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 23, 92
Bsp1286I GDGCHC 2 cut(s) 212, 231
Bsp143I GATC 3 cut(s) 17, 99, 136
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 7 cut(s) 2, 24, 27, 29, 77, 220, 269
BspANI GGCC 2 cut(s) 23, 92
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 2 cut(s) 4, 29
BspLI GGNNCC 2 cut(s) 101, 211
BspPI GGATC 3 cut(s) 25, 94, 107
BspQI GCTCTTC 2 cut(s) 57, 247
BspT107I GGYRCC 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 27, 104
BssMI GATC 3 cut(s) 17, 99, 136
Bst2UI CCWGG 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 57, 247
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 27, 104
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 2 cut(s) 4, 29
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 20, 102, 139
BstMBI GATC 3 cut(s) 17, 99, 136
BstMCI CGRYCG 2 cut(s) 24, 93
BstMWI GCNNNNNNNGC 2 cut(s) 29, 178
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 92, 222
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 2 cut(s) 4, 29
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BstZI CGGCCG 2 cut(s) 21, 90
BsuI GTATCC 2 cut(s) 108, 332
BsuRI GGCC 2 cut(s) 23, 92
BtgI CCRYGG 2 cut(s) 27, 104
BtsCI GGATG 1 cut(s) 301
CfoI GCGC 1 cut(s) 6
Cfr42I CCGCGG 1 cut(s) 30
Csp6I GTAC 1 cut(s) 160
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 19, 101, 138
DpnII GATC 3 cut(s) 17, 99, 136
EaeI YGGCCR 2 cut(s) 21, 90
EagI CGGCCG 2 cut(s) 21, 90
Eam1104I CTCTTC 2 cut(s) 57, 247
EarI CTCTTC 2 cut(s) 57, 247
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 2 cut(s) 21, 90
Eco24I GRGCYC 1 cut(s) 231
Eco52I CGGCCG 2 cut(s) 21, 90
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 231
FaiI YATR 1 cut(s) 206
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 270, 302
Fnu4HI GCNGC 3 cut(s) 24, 27, 30
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 24, 27, 30
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 24, 27, 30
HaeIII GGCC 2 cut(s) 23, 92
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 2 cut(s) 179, 284
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 175, 185, 293
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 272, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 178
HpyF3I CTNAG 1 cut(s) 33
HspAI GCGC 1 cut(s) 4
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 3 cut(s) 17, 99, 136
LguI GCTCTTC 2 cut(s) 57, 247
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 23, 106, 170, 209, 236, 278
LweI GCATC 1 cut(s) 76
MalI GATC 3 cut(s) 19, 101, 138
MboI GATC 3 cut(s) 17, 99, 136
MboII GAAGA 4 cut(s) 71, 74, 160, 234
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 212, 231
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 49, 104, 134, 162, 224, 246, 325
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 29, 37
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 94, 224
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 4, 29
MwoI GCNNNNNNNGC 2 cut(s) 29, 178
NciI CCSGG 1 cut(s) 94
NdeII GATC 3 cut(s) 17, 99, 136
NlaIV GGNNCC 2 cut(s) 101, 211
NmeAIII GCCGAG 3 cut(s) 32, 68, 190
PciSI GCTCTTC 2 cut(s) 57, 247
PctI GAATGC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 25, 28, 31
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 101, 211
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 231
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 2 cut(s) 57, 247
SatI GCNGC 3 cut(s) 24, 27, 30
Sau3AI GATC 3 cut(s) 17, 99, 136
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 94, 224
SduI GDGCHC 2 cut(s) 212, 231
SetI ASST 5 cut(s) 39, 145, 183, 231, 288
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 343
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 7 cut(s) 2, 24, 27, 29, 77, 220, 269
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 92, 222
TaqI TCGA 3 cut(s) 139, 176, 320
TauI GCSGC 3 cut(s) 26, 29, 32
TspDTI ATGAA 2 cut(s) 291, 312
TspGWI ACGGA 2 cut(s) 30, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.