Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001981

Physical Location & Seq

Genomic Coordinates Reverse (-)

39007240 .. 39009020

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCGGACTCAGCCGCCTCGAACTGGCCGCGTCGCTGCTGAAACGACGCAGTTTCACCCTCCTCGCTCCTCGCCGCGCCTACGGATCCGCCGCCGCGGCTCAGCTGGACTACTACTCCTCCTCCGAAGACGAAGAGTCAGAGAAGTATAAGGATCGGACGGCGGTGCTGGACTCCGCCGGGTGGGTCCCACGGAGAGGGATACATTGGTGTTTGATAGGAGATCGAAGTGCGAGGAAGCACTTGTACGCCGAGAGGCTCTCGAAGCTTCTGGAAGTTCCGCGCATCTCTATGGGCTCTCTCGTCCGCCAGGAGCTCAACCCTCGCTCTGCTCTCTACAAGCAGATTGCGAAAGCGGTGAATGGAGGGAAGCTTGTTGAGGATGAAGTGATTTTCGCATTGTTGTCGAAGAGGCTTGAAGAAGGATACTACAGAGGTGAAAATGGATTCATTCTTGATGGGATTCCTCGAACTAGAATTCAAGCGGAGTTGGTTGACCAAATTGCGGAAATTGATCTAGTAGTGAATCTCAAATCCGCTGATGATAACTTGGTGAAAACGGATCTAGGAACTGGAAGCTTGGCTCTTAGTCAAGAGTATCTTAGGATGAGTAACACTATGCATGATGTAAATCTGCAGGAAGAACAATTGAAATCCACAAAAGCTGAGCAGAGTAAGTCGTTGGAGGATTACTACAGAAAACAGAACAAACTCATCGATTTTCACATCAAAGGTGCCCCCGGAGAAACCTGGAAGGGGCTGCTGGCCGCATTGCATCTTCAGCATATAAATGCTGTCAGTTCTTCCCAGAAGCTAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

275

Amino Acids

30.7

Weight (kDa)

8.76

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	73 - 242	8.7e-20	Adenylate kinase
AAA_17	PF13207	83 - 186	2.9e-09	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01820
fragaria_vesca	FvH4_6g53130
malus_domestica	MD06G1144200.v1.1 MD09G1013900.v1.1 MD09G1014300.v1.1 MD17G1014400.v1.1
prunus_persica	Prupe.3G303400_v2.0.a1
pyrus_communis	pycom06g13370 pycom07g09870
rosa_chinensis	RchiOBHm_Chr2g0175001 RchiOBHm_Chr7g0190491
rosa_laevigata	RLG00000004522 RLG00000010233 RLG00000022307 RLG00000022322
rosa_multiflora	Rmu_co7982852.1_g000001 Rmu_sc0001716.1_g000035 Rmu_sc0003920.1_g000002 Rmu_sc0010642.1_g000002 Rmu_sc0010806.1_g000001 Rmu_sc0014601.1_g000013 Rmu_sc0020514.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077590 Rroxscaffold_3G00264550 Rroxscaffold_7G00211240
rosa_rugosa	Rorug02G0581000 Rorug05G0549400 Rorug06G0504900 Rorug06G0505000 Rorug06G0505000
rosa_samantha	Rh2AG661800 Rh2BG673100 Rh2CG416400 Rh2CG636200 Rh2DG686700 Rh6AG066000 Rh6BG058800 Rh6BG059000 Rh6BG059100 Rh7AG111000 Rh7BG113900 Rh7CG116000 Rh7DG114800
rosa_wichuraiana	Rw2G054250 Rw7G009690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccII	CGCG	4 cut(s)	32, 78, 98, 283
AclWI	GGATC	4 cut(s)	81, 94, 162, 570
AcoI	YGGCCR	3 cut(s)	3, 27, 765
AcsI	RAATTY	1 cut(s)	477
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	5 cut(s)	25, 183, 197, 505, 756
AgsI	TTSAA	3 cut(s)	419, 482, 652
AhdI	GACNNNNNGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	309, 749
AluBI	AGCT	7 cut(s)	106, 268, 316, 373, 579, 665, 814
AluI	AGCT	7 cut(s)	106, 268, 316, 373, 579, 665, 814
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	4 cut(s)	81, 94, 162, 570
AoxI	GGCC	3 cut(s)	3, 27, 765
ApeKI	GCWGC	2 cut(s)	37, 760
ApoI	RAATTY	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	80, 285
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	181, 741
AsuHPI	GGTGA	4 cut(s)	49, 370, 449, 565
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BamHI	GGATCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	2 cut(s)	299, 318
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	24, 747
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	2 cut(s)	311, 751
BciVI	GTATCC	2 cut(s)	195, 419
BcnI	CCSGG	2 cut(s)	181, 741
BfaI	CTAG	3 cut(s)	474, 518, 566
BfmI	CTRYAG	3 cut(s)	430, 635, 694
BfuI	GTATCC	2 cut(s)	195, 419
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	9 cut(s)	16, 30, 38, 76, 93, 96, 99, 761, 768
BlpI	GCTNAGC	2 cut(s)	102, 666
BlsI	GCNGC	9 cut(s)	17, 31, 39, 77, 94, 97, 100, 762, 769
Bme1390I	CCNGG	4 cut(s)	181, 311, 741, 751
Bme18I	GGWCC	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	4 cut(s)	88, 188, 189, 736
BmrFI	CCNGG	4 cut(s)	181, 311, 741, 751
BmsI	GCATC	2 cut(s)	294, 784
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu1102I	GCTNAGC	2 cut(s)	102, 666
BpuMI	CCSGG	2 cut(s)	181, 741
Bsa29I	ATCGAT	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	96, 191, 739
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 104, 107, 131, 134, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 183, 197, 505, 756
Bse1I	ACTGG	2 cut(s)	30, 577
Bse3DI	GCAATG	1 cut(s)	770
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	311, 751
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	96, 191, 739
BseGI	GGATG	2 cut(s)	388, 612
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	5 cut(s)	25, 183, 197, 505, 756
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	3 cut(s)	25, 116, 657
BseNI	ACTGG	2 cut(s)	30, 577
BseRI	GAGGAG	4 cut(s)	53, 60, 109, 112
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	24, 747
Bsh1236I	CGCG	4 cut(s)	32, 78, 98, 283
BshFI	GGCC	3 cut(s)	5, 29, 767
BshNI	GGYRCC	1 cut(s)	734
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	6, 180, 741
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	5 cut(s)	25, 183, 197, 505, 756
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	5, 29, 767
Bsp1286I	GDGCHC	3 cut(s)	299, 318, 739
Bsp143I	GATC	5 cut(s)	86, 154, 223, 514, 562
Bsp1720I	GCTNAGC	2 cut(s)	102, 666
BspANI	GGCC	3 cut(s)	5, 29, 767
BspCNI	CTCAG	3 cut(s)	24, 115, 658
BspDI	ATCGAT	1 cut(s)	717
BspFNI	CGCG	4 cut(s)	32, 78, 98, 283
BspLI	GGNNCC	4 cut(s)	88, 188, 189, 736
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	4 cut(s)	81, 94, 162, 570
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	30, 577
BssECI	CCNNGG	3 cut(s)	96, 191, 739
BssMI	GATC	5 cut(s)	86, 154, 223, 514, 562
Bst2UI	CCWGG	2 cut(s)	311, 751
Bst6I	CTCTTC	2 cut(s)	129, 404
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	5 cut(s)	11, 102, 587, 602, 666
BstDSI	CCRYGG	2 cut(s)	96, 191
BstF5I	GGATG	2 cut(s)	388, 612
BstFNI	CGCG	4 cut(s)	32, 78, 98, 283
BstHHI	GCGC	2 cut(s)	80, 285
BstKTI	GATC	5 cut(s)	89, 157, 226, 517, 565
BstMBI	GATC	5 cut(s)	86, 154, 223, 514, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 265, 781
BstNI	CCWGG	2 cut(s)	311, 751
BstSCI	CCNGG	4 cut(s)	179, 309, 739, 749
BstSFI	CTRYAG	3 cut(s)	430, 635, 694
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	4 cut(s)	32, 78, 98, 283
BstV1I	GCAGC	2 cut(s)	24, 747
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	86, 562
BstYI	RGATCY	2 cut(s)	86, 562
Bsu15I	ATCGAT	1 cut(s)	717
BsuI	GTATCC	2 cut(s)	195, 419
BsuRI	GGCC	3 cut(s)	5, 29, 767
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	2 cut(s)	96, 191
BtsCI	GGATG	2 cut(s)	388, 612
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	2 cut(s)	80, 285
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	2 cut(s)	21, 57
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	623, 822
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	5 cut(s)	11, 102, 587, 602, 666
DpnI	GATC	5 cut(s)	88, 156, 225, 516, 564
DpnII	GATC	5 cut(s)	86, 154, 223, 514, 562
DriI	GACNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	3 cut(s)	3, 27, 765
Eam1104I	CTCTTC	2 cut(s)	129, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	2 cut(s)	129, 404
EciI	GGCGGA	3 cut(s)	79, 166, 296
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	299, 318
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	309, 749
EcoT22I	ATGCAT	1 cut(s)	624
EcoT38I	GRGCYC	2 cut(s)	299, 318
FaeI	CATG	2 cut(s)	626, 825
FaiI	YATR	7 cut(s)	150, 293, 620, 624, 786, 788, 823
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	622, 821
Fnu4HI	GCNGC	9 cut(s)	16, 30, 38, 76, 93, 96, 99, 761, 768
FokI	GGATG	2 cut(s)	395, 619
FriOI	GRGCYC	2 cut(s)	299, 318
Fsp4HI	GCNGC	9 cut(s)	16, 30, 38, 76, 93, 96, 99, 761, 768
FspBI	CTAG	3 cut(s)	474, 518, 566
GlaI	GCGC	2 cut(s)	79, 284
GluI	GCNGC	9 cut(s)	16, 30, 38, 76, 93, 96, 99, 761, 768
HaeIII	GGCC	3 cut(s)	5, 29, 767
HapII	CCGG	3 cut(s)	6, 180, 741
HgaI	GACGC	2 cut(s)	21, 57
HhaI	GCGC	2 cut(s)	80, 285
Hin1II	CATG	2 cut(s)	626, 825
Hin6I	GCGC	2 cut(s)	78, 283
HinP1I	GCGC	2 cut(s)	78, 283
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	3 cut(s)	266, 371, 577
HinfI	GANTC	6 cut(s)	9, 137, 173, 447, 463, 526
HpaII	CCGG	3 cut(s)	6, 180, 741
HphI	GGTGA	4 cut(s)	49, 370, 449, 565
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	127, 142, 159
Hpy188III	TCNNGA	4 cut(s)	262, 272, 455, 593
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	2 cut(s)	37, 51
HpyAV	CCTTC	2 cut(s)	416, 748
HpyCH4V	TGCA	4 cut(s)	622, 637, 775, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 265, 781
HpyF3I	CTNAG	5 cut(s)	11, 102, 587, 602, 666
Hsp92II	CATG	2 cut(s)	626, 825
HspAI	GCGC	2 cut(s)	78, 283
KflI	GGGWCCC	1 cut(s)	187
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	86, 154, 223, 514, 562
LmnI	GCTCC	2 cut(s)	73, 313
Lsp1109I	GCAGC	2 cut(s)	24, 747
LweI	GCATC	2 cut(s)	294, 784
MaeI	CTAG	3 cut(s)	474, 518, 566
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	5 cut(s)	88, 156, 225, 516, 564
MboI	GATC	5 cut(s)	86, 154, 223, 514, 562
MboII	GAAGA	7 cut(s)	140, 146, 421, 431, 653, 770, 795
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	2 cut(s)	86, 562
MhlI	GDGCHC	3 cut(s)	299, 318, 739
MluCI	AATT	4 cut(s)	477, 501, 510, 647
MlyI	GAGTC	3 cut(s)	3, 146, 167
MmeI	TCCRAC	1 cut(s)	663
Mph1103I	ATGCAT	1 cut(s)	624
MslI	CAYNNNNRTG	2 cut(s)	290, 789
MspA1I	CMGCKG	3 cut(s)	98, 106, 539
MspI	CCGG	3 cut(s)	6, 180, 741
MspR9I	CCNGG	4 cut(s)	181, 311, 741, 751
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	311, 751
MvnI	CGCG	4 cut(s)	32, 78, 98, 283
MwoI	GCNNNNNNNGC	3 cut(s)	98, 265, 781
NciI	CCSGG	2 cut(s)	181, 741
NdeII	GATC	5 cut(s)	86, 154, 223, 514, 562
NlaIII	CATG	2 cut(s)	626, 825
NlaIV	GGNNCC	4 cut(s)	88, 188, 189, 736
NmeAIII	GCCGAG	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	447, 463, 526
PkrI	GCNGC	9 cut(s)	17, 31, 39, 77, 94, 97, 100, 762, 769
PleI	GAGTC	3 cut(s)	3, 145, 167
PpsI	GAGTC	3 cut(s)	3, 145, 167
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	309, 749
PspGI	CCWGG	2 cut(s)	309, 749
PspN4I	GGNNCC	4 cut(s)	88, 188, 189, 736
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	639
PsuI	RGATCY	2 cut(s)	86, 562
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	2 cut(s)	290, 789
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	1 cut(s)	99
SatI	GCNGC	9 cut(s)	16, 30, 38, 76, 93, 96, 99, 761, 768
Sau3AI	GATC	5 cut(s)	86, 154, 223, 514, 562
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	3, 146, 167
ScrFI	CCNGG	4 cut(s)	181, 311, 741, 751
SduI	GDGCHC	3 cut(s)	299, 318, 739
SfaNI	GCATC	2 cut(s)	294, 784
SfcI	CTRYAG	3 cut(s)	430, 635, 694
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	2 cut(s)	290, 789
Sse9I	AATT	4 cut(s)	477, 501, 510, 647
SspMI	CTAG	3 cut(s)	474, 518, 566
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	179, 309, 739, 749
TaqI	TCGA	6 cut(s)	21, 226, 263, 407, 469, 717
TasI	AATT	4 cut(s)	477, 501, 510, 647
TauI	GCSGC	7 cut(s)	18, 32, 78, 95, 98, 101, 770
TfiI	GAWTC	3 cut(s)	447, 463, 526
TseI	GCWGC	2 cut(s)	37, 760
TspDTI	ATGAA	2 cut(s)	399, 439
TspGWI	ACGGA	3 cut(s)	99, 208, 575
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	477
XspI	CTAG	3 cut(s)	474, 518, 566
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.