Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Reverse (-)

1541886 .. 1546562

Gene Structure 4677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCAAAACGACGAGGTCATATGGCAGGTTATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAAACCCATATAACGTCACTGGGATTTGTAACCGAAGCTCGTGCCCTCTGGCTAATAGTCGCTATGCCACCATTCGCGACCATGATGGAGTCTTCTATCTTTATATGAAAACTATAGAAAGAGCTCATATGCCAAACAAATTGTGGGAAAGAGTTAAGTTACCCAGGAATTATGAGAAAGCACTTGAAATTATTGACAAACATCTGATGTACTGGCCTAAGTTTCTTGTGCACAAAACAAAGCAACGGCTGACTAAAATGACCCAGATGAGGATACGCATGAGGAAGCTTGCTTTGAAAACAAGGGAGAAAATAATGACGACACCAAGGAAAGAGAAAAAGAGAGAGGCTAGAAGAGAGGAAAAGGCTGAAAAAGCTGCAGTGTTGGATAAGAGCATTGAGAGAGAACTATTAGAACGCCTCAAGAAAGGAGTTTATGGTGATGCATATAAAGATATATATAATTACCCCTTTGATAAATACCAAAAAGTTCTTGAAGGGGAAGAAATGCAGTTGGATACTGAGAGAGAAGAGGAAGAGGAGGAGGAACCTGAGATAGAATATGTTGAAGGTTATGATGAACTTGAAGAGGAAGATGATATTGAAGATTTTGCTGGTTTTTCAATGGACAATTCTCATGCAGATGATGATAATGTTGGAAGTGATGAAGAGGCAGAAGCAGTTACTCGCAAGAGAGAGAGAAAGGAATCTGCATTTGCTTCTAGAAGATTTGAGAAAGATGAACCTGCTGCCAAATCGAAGAAGAAGCCGAGGGTACTTGTTGAGGTTTTGAGTAATGGAAGGTATAAGAGCGTGCACCACAGGGCAGTGACCAACAAAGTTGAGCCAAGGTTGTCATTAGCAATGTTCTATGGACCCAACAAGGACACAGTGATTGGTCCAATTGAGGATTTGATTGACGAGGAACACCCTCCATTGTACCGGAGATATATGTATGTAGAGTTTTTTGAGAAACTCTACAAGCAAGAAGGAAAAGAAGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

364

Amino Acids

43.39

Weight (kDa)

6.28

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	16, 838
AccII	CGCG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	296, 861, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	8 cut(s)	68, 272, 382, 581, 653, 671, 689, 708
AjnI	CCWGG	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	1 cut(s)	1069
AluBI	AGCT	5 cut(s)	51, 123, 209, 373, 461
AluI	AGCT	5 cut(s)	51, 123, 209, 373, 461
Alw21I	GWGCWC	3 cut(s)	211, 318, 903
Alw44I	GTGCAC	2 cut(s)	314, 899
AoxI	GGCC	1 cut(s)	299
ApaLI	GTGCAC	2 cut(s)	314, 899
ApeKI	GCWGC	3 cut(s)	48, 461, 833
AspS9I	GGNCC	2 cut(s)	959, 983
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	959, 983
BaeGI	GKGCMC	3 cut(s)	131, 318, 903
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	3 cut(s)	211, 318, 903
BbvI	GCAGC	3 cut(s)	60, 448, 820
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	250
BciVI	GTATCC	2 cut(s)	351, 595
BfaI	CTAG	2 cut(s)	435, 807
BfmI	CTRYAG	4 cut(s)	46, 82, 198, 462
BfuAI	ACCTGC	2 cut(s)	16, 838
BfuI	GTATCC	2 cut(s)	351, 595
BisI	GCNGC	3 cut(s)	49, 462, 834
BlsI	GCNGC	3 cut(s)	50, 463, 835
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	2 cut(s)	959, 983
BmgT120I	GGNCC	2 cut(s)	959, 983
BmiI	GGNNCC	2 cut(s)	633, 961
BmrFI	CCNGG	1 cut(s)	250
BmrI	ACTGGG	2 cut(s)	81, 114
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	2 cut(s)	81, 114
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	248, 410, 854, 932
BsaWI	WCCGGW	1 cut(s)	1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	3 cut(s)	76, 109, 302
Bse3DI	GCAATG	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	248, 410, 854, 932
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	2 cut(s)	597, 627
BseNI	ACTGG	3 cut(s)	76, 109, 302
BseRI	GAGGAG	2 cut(s)	638, 641
BseSI	GKGCMC	3 cut(s)	131, 318, 903
BseXI	GCAGC	3 cut(s)	60, 448, 820
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	3 cut(s)	211, 318, 903
BsiSI	CCGG	1 cut(s)	1027
BslI	CCNNNNNNNGG	1 cut(s)	354
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	4 cut(s)	131, 211, 318, 903
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	598, 628
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	633, 961
BspMAI	CTGCAG	2 cut(s)	50, 466
BspMI	ACCTGC	2 cut(s)	16, 838
BsrDI	GCAATG	1 cut(s)	954
BsrI	ACTGG	3 cut(s)	76, 109, 302
BssECI	CCNNGG	4 cut(s)	248, 410, 854, 932
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	410, 932
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	976
Bst6I	CTCTTC	5 cut(s)	433, 609, 615, 666, 747
BstC8I	GCNNGC	2 cut(s)	375, 899
BstDEI	CTNAG	3 cut(s)	303, 606, 636
BstFNI	CGCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	4 cut(s)	46, 82, 198, 462
BstSLI	GKGCMC	3 cut(s)	131, 318, 903
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	60, 448, 820
BstV2I	GAAGAC	1 cut(s)	169
BsuI	GTATCC	2 cut(s)	351, 595
BsuRI	GGCC	1 cut(s)	301
BtsI	GCAGTG	3 cut(s)	43, 471, 918
BtsIMutI	CAGTG	5 cut(s)	43, 102, 471, 918, 981
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	2 cut(s)	16, 838
Cac8I	GCNNGC	2 cut(s)	375, 899
Cfr13I	GGNCC	2 cut(s)	959, 983
Csp6I	GTAC	3 cut(s)	295, 860, 1024
CviAII	CATG	4 cut(s)	55, 167, 364, 722
CviQI	GTAC	3 cut(s)	295, 860, 1024
DdeI	CTNAG	3 cut(s)	303, 606, 636
Eam1104I	CTCTTC	5 cut(s)	433, 609, 615, 666, 747
EarI	CTCTTC	5 cut(s)	433, 609, 615, 666, 747
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	410, 932
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	959, 983
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	410, 932
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	410, 932
FaeI	CATG	4 cut(s)	58, 170, 367, 725
FatI	CATG	4 cut(s)	54, 166, 363, 721
FauNDI	CATATG	2 cut(s)	20, 213
Fnu4HI	GCNGC	3 cut(s)	49, 462, 834
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	49, 462, 834
FspBI	CTAG	2 cut(s)	435, 807
GluI	GCNGC	3 cut(s)	49, 462, 834
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	1027
Hin1II	CATG	4 cut(s)	58, 170, 367, 725
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	174, 791
HpaII	CCGG	1 cut(s)	1027
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	316, 901
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	161, 508, 578, 807
Hpy8I	GTNNAC	2 cut(s)	316, 901
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	575, 647, 879, 1067
HpyCH4III	ACNGT	1 cut(s)	976
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	9 cut(s)	4, 48, 316, 464, 530, 595, 725, 797, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	303, 606, 636
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	58, 170, 367, 725
Lsp1109I	GCAGC	3 cut(s)	60, 448, 820
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	435, 807
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	5 cut(s)	100, 113, 243, 766, 913
MfeI	CAATTG	1 cut(s)	987
MhlI	GDGCHC	4 cut(s)	131, 211, 318, 903
MluCI	AATT	7 cut(s)	63, 224, 253, 273, 547, 715, 987
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	3 cut(s)	450, 579, 721
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	726
MspI	CCGG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	987
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeI	CATATG	2 cut(s)	20, 213
NlaIII	CATG	4 cut(s)	58, 170, 367, 725
NlaIV	GGNNCC	2 cut(s)	633, 961
NmeAIII	GCCGAG	1 cut(s)	879
NmuCI	GTSAC	2 cut(s)	100, 913
NruI	TCGCGA	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	791
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	50, 463, 835
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	633, 961
PspPI	GGNCC	2 cut(s)	959, 983
PstI	CTGCAG	2 cut(s)	50, 466
PsyI	GACNNNGTC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	3 cut(s)	296, 861, 1025
RsaNI	GTAC	3 cut(s)	295, 860, 1024
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	49, 462, 834
Sau96I	GGNCC	2 cut(s)	959, 983
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	4 cut(s)	131, 211, 318, 903
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	4 cut(s)	46, 82, 198, 462
SinI	GGWCC	2 cut(s)	959, 983
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	7 cut(s)	63, 224, 253, 273, 547, 715, 987
SspMI	CTAG	2 cut(s)	435, 807
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	410, 932
TaaI	ACNGT	1 cut(s)	976
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	842
TasI	AATT	7 cut(s)	63, 224, 253, 273, 547, 715, 987
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	5 cut(s)	50, 109, 471, 918, 981
TseFI	GTSAC	2 cut(s)	100, 913
TseI	GCWGC	3 cut(s)	48, 461, 833
Tsp45I	GTSAC	2 cut(s)	100, 913
TspDTI	ATGAA	5 cut(s)	43, 206, 678, 765, 840
TspRI	CASTG	5 cut(s)	50, 109, 471, 918, 981
Tth111I	GACNNNGTC	1 cut(s)	14
VneI	GTGCAC	2 cut(s)	314, 899
VpaK11BI	GGWCC	2 cut(s)	959, 983
XbaI	TCTAGA	1 cut(s)	806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	2 cut(s)	435, 807
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.