Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

9053350 .. 9055686

Gene Structure 2337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCAGCACGACGAAGTCATATGGCAGGTGATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAACTTTCTGCAATGCTTACACTCTATTGATATGGTTATGTTGTTGGTGTTGGCCTGCAGGAGTGTTTTATCTTTATATGAAAACTATAGAAAGAGCCCATATGCCGAACAAATTGTGGGAAAGAGTTAAGTTGCCAGTTAATTATGAGAAAGCACTTGGAATCATTGATAAACACTTGATGTATTGGCCTAAGTTTCTTGTACATAAAACAAAGCAACGGCTGACTAAAATGACTCAGATGCGGATACGCATGAGGAAGCTTGCTTTGAAAACGAGGGAGAAGATAATGACAATACCAAGGAAAGAGATAAAAAGAGAGGCCAGAAGAGAGGAAAAGGCTGAAAAAGCTGCGGTGTTGGATAAGAGCATCGAGAAAGAACTATTAAGCCGCCTTAAGGAAGGAATGTATGGTGATATATATAACTATCCCTTTGATAAATTCCAAAAACTCATTGAAGGGGAAGAAATGGAGGTGGATACTGAAAGAGAACAAGAAGATGAGGAGGAGGCTGAAATTGAATATGTTGAAGGTTATGATGAACTTGAAGAGGAAGATGATATTGAAGATCTTGGTGGTTTTGCAATGGACCATTCTCATGCAGACGATGATAGTGGTGGAGATGAAGAAGCAGAAGCAGTTACTCGCAAGAGAGAGAGAAAAGAATCTGATTCTAGAAAGTTTGGAAAAGATAAAGGTGTTGCCAAGTTGAAGAAGCCTAGAGTATTGATTGAGGTTGAATATGAAGATACCCGCGAAAGACAGAAGGCAGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

287

Amino Acids

34.35

Weight (kDa)

5.9

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	49 - 109	1.8e-14	Ribosomal L28e protein family
Mak16	PF04874	129 - 218	1.5e-22	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccII	CGCG	1 cut(s)	840
AciI	CCGC	4 cut(s)	328, 437, 475, 838
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	481
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	9 cut(s)	68, 355, 542, 605, 614, 632, 650, 796, 824
AluBI	AGCT	3 cut(s)	51, 346, 434
AluI	AGCT	3 cut(s)	51, 346, 434
AoxI	GGCC	3 cut(s)	137, 272, 405
ApeKI	GCWGC	3 cut(s)	4, 48, 434
ApoI	RAATTY	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	40, 509
AvaII	GGWCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	16, 60, 421
BceAI	ACGGC	1 cut(s)	320
BciVI	GTATCC	2 cut(s)	324, 556
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	2 cut(s)	759, 804
BfmI	CTRYAG	4 cut(s)	46, 82, 141, 171
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	324, 556
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	4 cut(s)	5, 49, 435, 475
BlsI	GCNGC	4 cut(s)	6, 50, 436, 476
Bme18I	GGWCC	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	673
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	315, 462
BmuI	ACTGGG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	76, 221
Bse3DI	GCAATG	2 cut(s)	103, 675
BseDI	CCNNGG	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	2 cut(s)	103, 675
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	76, 221
BseRI	GAGGAG	2 cut(s)	602, 605
BseXI	GCAGC	3 cut(s)	16, 60, 421
Bsh1236I	CGCG	1 cut(s)	840
BshFI	GGCC	3 cut(s)	139, 274, 407
BslI	CCNNNNNNNGG	1 cut(s)	481
BsnI	GGCC	3 cut(s)	139, 274, 407
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	30, 652
BspACI	CCGC	4 cut(s)	328, 437, 475, 838
BspANI	GGCC	3 cut(s)	139, 274, 407
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	840
BspMAI	CTGCAG	2 cut(s)	50, 145
BspMI	ACCTGC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	103, 675
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	76, 221
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	30, 652
BssT1I	CCWWGG	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	406, 627
BstAFI	CTTAAG	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	141, 348
BstDEI	CTNAG	2 cut(s)	276, 321
BstFNI	CGCG	1 cut(s)	840
BstKTI	GATC	2 cut(s)	33, 655
BstMBI	GATC	2 cut(s)	30, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSFI	CTRYAG	4 cut(s)	46, 82, 141, 171
BstUI	CGCG	1 cut(s)	840
BstV1I	GCAGC	3 cut(s)	16, 60, 421
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuI	GTATCC	2 cut(s)	324, 556
BsuRI	GGCC	3 cut(s)	139, 274, 407
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	141, 348
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	3 cut(s)	55, 337, 683
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	2 cut(s)	276, 321
DpnI	GATC	2 cut(s)	32, 654
DpnII	GATC	2 cut(s)	30, 652
Eam1104I	CTCTTC	2 cut(s)	406, 627
EarI	CTCTTC	2 cut(s)	406, 627
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	3 cut(s)	58, 340, 686
FatI	CATG	3 cut(s)	54, 336, 682
FauI	CCCGC	1 cut(s)	845
FauNDI	CATATG	2 cut(s)	20, 186
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	5, 49, 435, 475
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	4 cut(s)	5, 49, 435, 475
FspBI	CTAG	2 cut(s)	759, 804
GluI	GCNGC	4 cut(s)	5, 49, 435, 475
HaeIII	GGCC	3 cut(s)	139, 274, 407
Hin1II	CATG	3 cut(s)	58, 340, 686
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	4 cut(s)	246, 319, 749, 755
HphI	GGTGA	2 cut(s)	40, 509
Hpy188I	TCNGA	2 cut(s)	324, 754
Hpy188III	TCNNGA	2 cut(s)	457, 759
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	479, 536, 608, 844
HpyCH4V	TGCA	6 cut(s)	4, 48, 96, 143, 668, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	276, 321
Hsp92II	CATG	3 cut(s)	58, 340, 686
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 652
LpnPI	CCDG	7 cut(s)	11, 19, 57, 129, 153, 234, 421
Lsp1109I	GCAGC	3 cut(s)	16, 60, 421
LweI	GCATC	2 cut(s)	315, 462
MaeI	CTAG	2 cut(s)	759, 804
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	2 cut(s)	32, 654
MboI	GATC	2 cut(s)	30, 652
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	5 cut(s)	63, 197, 226, 524, 600
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	423
MseI	TTAA	4 cut(s)	213, 225, 470, 480
MslI	CAYNNNNRTG	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeI	CATATG	2 cut(s)	20, 186
NdeII	GATC	2 cut(s)	30, 652
NlaIII	CATG	3 cut(s)	58, 340, 686
PaqCI	CACCTGC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	246, 749, 755
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	6, 50, 436, 476
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	673
PstI	CTGCAG	2 cut(s)	50, 145
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	213, 225, 470, 480
SatI	GCNGC	4 cut(s)	5, 49, 435, 475
Sau3AI	GATC	2 cut(s)	30, 652
Sau96I	GGNCC	1 cut(s)	673
SbfI	CCTGCAGG	1 cut(s)	145
SchI	GAGTC	1 cut(s)	313
SdaI	CCTGCAGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	30, 53, 348, 436, 561, 619, 784, 822
SfaNI	GCATC	2 cut(s)	315, 462
SfcI	CTRYAG	4 cut(s)	46, 82, 141, 171
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse8387I	CCTGCAGG	1 cut(s)	145
Sse9I	AATT	5 cut(s)	63, 197, 226, 524, 600
SsiI	CCGC	4 cut(s)	328, 437, 475, 838
SspMI	CTAG	2 cut(s)	759, 804
StyI	CCWWGG	1 cut(s)	383
TaqI	TCGA	1 cut(s)	456
TasI	AATT	5 cut(s)	63, 197, 226, 524, 600
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	246, 749, 755
Tru1I	TTAA	4 cut(s)	213, 225, 470, 480
Tru9I	TTAA	4 cut(s)	213, 225, 470, 480
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	3 cut(s)	4, 48, 434
TspDTI	ATGAA	5 cut(s)	43, 179, 639, 723, 843
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	758
XspI	CTAG	2 cut(s)	759, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.