Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

8570700 .. 8575201

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGCACGACGAAGTCATATGGCAGGTGATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAAACCCATATAACGTTACTGGGATTTGTAACCGAAGCTCCTGCCCTCTCGCTAATAGTCGCTACGCTACAATTCGTGACCATGATGGAGTGTTTTATCTTTATATGAAAACTATAGAAAGAGCCCATATGCCGAACAAATTGTGGGAAAGAGTTAAGTTGCCGGTTAATTATGAGAAAGCACTTGGAATCATTGATAAACACTTGATGTATTGGCCCAAGTTTCTTGTACATAAAACAAAGCAACGGCTGACTAAAATGACTCAGATGCGGATACGCATGAGGAAGCTTGCTTTGAAAACGAGGGAGAAGATAATGACAATACCAAGGAAAGAGATAAAAAGAGAGGCCAGAAGAGAGGAAAAGGCTGAAAAAGCTGCGGTGTTGGATAAGAGCATCGAGAAAGAACTATTAAGCCGCCTTAAGGAAGGAATGTATGGTGATATATATAACTATCCCTTTGATAAATTCCAAAAACTTATTGAAGGGGAAGAAATGGAGGTGGATACTGAAAGAGAACAAGAAGATGAGGAGGAGGCTGAAATTGAATATGTTGAAGGTTATGATGAACTTGAAGAGGAAGATGATATTGAAGATCTTGGTGGTTATGCAATGGACCATTCTCATGCAGACGATGATAATGGTGGAATAGATGAAGAAGCAGAAGCAGTTACTCGCAAGAGAGAGAGAAAAGAATCTGATTCTAGAAAGTTTGGAAAAGATAAAGGTGTTGCCAAGTTGAAGAAGCCTAGAGTATTGATTGAGGTTGAATATGAAGATACCCGCGAAAGGCAAAAGGCAGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

297

Amino Acids

35.29

Weight (kDa)

6.08

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	1.3e-38	Ribosomal L28e protein family
Mak16	PF04874	138 - 227	1.6e-22	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccII	CGCG	1 cut(s)	870
AciI	CCGC	4 cut(s)	355, 464, 502, 868
AclI	AACGTT	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	508, 873
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	9 cut(s)	68, 382, 569, 632, 641, 659, 677, 826, 854
AluBI	AGCT	4 cut(s)	51, 123, 373, 461
AluI	AGCT	4 cut(s)	51, 123, 373, 461
AoxI	GGCC	2 cut(s)	299, 432
ApeKI	GCWGC	3 cut(s)	4, 48, 461
ApoI	RAATTY	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	300, 700
AsuHPI	GGTGA	2 cut(s)	40, 536
AvaII	GGWCC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	16, 60, 448
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciVI	GTATCC	2 cut(s)	351, 583
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	2 cut(s)	789, 834
BfmI	CTRYAG	3 cut(s)	46, 82, 198
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	351, 583
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	4 cut(s)	5, 49, 462, 502
BlsI	GCNGC	4 cut(s)	6, 50, 463, 503
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	300, 700
BmrI	ACTGGG	2 cut(s)	81, 114
BmsI	GCATC	2 cut(s)	342, 489
BmuI	ACTGGG	2 cut(s)	81, 114
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 873
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	76, 109
Bse3DI	GCAATG	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	508, 873
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	76, 109
BseRI	GAGGAG	2 cut(s)	629, 632
BseXI	GCAGC	3 cut(s)	16, 60, 448
Bsh1236I	CGCG	1 cut(s)	870
BshFI	GGCC	2 cut(s)	301, 434
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	508, 873
BsnI	GGCC	2 cut(s)	301, 434
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	30, 679
BspACI	CCGC	4 cut(s)	355, 464, 502, 868
BspANI	GGCC	2 cut(s)	301, 434
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	870
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	76, 109
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	30, 679
BssT1I	CCWWGG	1 cut(s)	410
Bst6I	CTCTTC	2 cut(s)	433, 654
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	870
BstKTI	GATC	2 cut(s)	33, 682
BstMBI	GATC	2 cut(s)	30, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstSFI	CTRYAG	3 cut(s)	46, 82, 198
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	3 cut(s)	16, 60, 448
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuI	GTATCC	2 cut(s)	351, 583
BsuRI	GGCC	2 cut(s)	301, 434
BtsI	GCAGTG	2 cut(s)	43, 891
BtsIMutI	CAGTG	2 cut(s)	43, 891
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	300, 700
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	4 cut(s)	55, 167, 364, 710
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	32, 681
DpnII	GATC	2 cut(s)	30, 679
Eam1104I	CTCTTC	2 cut(s)	433, 654
EarI	CTCTTC	2 cut(s)	433, 654
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	58, 170, 367, 713
FatI	CATG	4 cut(s)	54, 166, 363, 709
FauI	CCCGC	1 cut(s)	875
FauNDI	CATATG	2 cut(s)	20, 213
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	5, 49, 462, 502
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	5, 49, 462, 502
FspBI	CTAG	2 cut(s)	789, 834
GluI	GCNGC	4 cut(s)	5, 49, 462, 502
HaeIII	GGCC	2 cut(s)	301, 434
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	4 cut(s)	58, 170, 367, 713
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	4 cut(s)	273, 346, 779, 785
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	40, 536
Hpy188I	TCNGA	2 cut(s)	351, 784
Hpy188III	TCNNGA	3 cut(s)	161, 484, 789
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	506, 563, 635
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	4, 48, 695, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	58, 170, 367, 713
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	30, 679
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	11, 19, 57, 90, 139, 261, 448
Lsp1109I	GCAGC	3 cut(s)	16, 60, 448
LweI	GCATC	2 cut(s)	342, 489
MaeI	CTAG	2 cut(s)	789, 834
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	100, 113, 161, 754
MalI	GATC	2 cut(s)	32, 681
MboI	GATC	2 cut(s)	30, 679
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	6 cut(s)	63, 156, 224, 253, 551, 627
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	450
MseI	TTAA	4 cut(s)	240, 252, 497, 507
MslI	CAYNNNNRTG	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	2 cut(s)	30, 679
NlaIII	CATG	4 cut(s)	58, 170, 367, 713
NmuCI	GTSAC	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	273, 779, 785
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	6, 50, 463, 503
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	300, 700
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	240, 252, 497, 507
SatI	GCNGC	4 cut(s)	5, 49, 462, 502
Sau3AI	GATC	2 cut(s)	30, 679
Sau96I	GGNCC	2 cut(s)	300, 700
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	342, 489
SfcI	CTRYAG	3 cut(s)	46, 82, 198
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	6 cut(s)	63, 156, 224, 253, 551, 627
SsiI	CCGC	4 cut(s)	355, 464, 502, 868
SspMI	CTAG	2 cut(s)	789, 834
StyI	CCWWGG	1 cut(s)	410
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	483
TasI	AATT	6 cut(s)	63, 156, 224, 253, 551, 627
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	273, 779, 785
Tru1I	TTAA	4 cut(s)	240, 252, 497, 507
Tru9I	TTAA	4 cut(s)	240, 252, 497, 507
TscAI	CASTG	2 cut(s)	50, 891
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	4, 48, 461
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	5 cut(s)	43, 206, 666, 753, 873
TspRI	CASTG	2 cut(s)	50, 891
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	551
XbaI	TCTAGA	1 cut(s)	788
XspI	CTAG	2 cut(s)	789, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.