Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

9785198 .. 9785798

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG115400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAGCACGACGAAGTCATATGGCAGGTGATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAAACCCATATAACGTTACTGGGATTTGTAACCGAAGCTCCTGCCCTCTCGCTAATAGTCGCTATGCTACAATTCGTGACCATGATGGAGTGTTTTATCTTTATATGAAAACTATAGAAAGAGCCCATATGCCGAAAAAATTGTGGGAAAGAGTTAAGTTGCCAGTTAATTATGAGAAAGCACTTGGAATCATTGATAAACACTTGGTAGGGAAAATGGCGCTCTTTGTTTGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

107

Amino Acids

12.67

Weight (kDa)

9.44

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 97	4e-33	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AclI	AACGTT	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	2 cut(s)	51, 123
AluI	AGCT	2 cut(s)	51, 123
ApeKI	GCWGC	2 cut(s)	4, 48
AspLEI	GCGC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	16, 60
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BclI	TGATCA	1 cut(s)	30
BfmI	CTRYAG	3 cut(s)	46, 82, 198
BfoI	RGCGCY	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	5, 49
BlsI	GCNGC	2 cut(s)	6, 50
BmrI	ACTGGG	2 cut(s)	81, 114
BmuI	ACTGGG	2 cut(s)	81, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	3 cut(s)	76, 109, 248
BseNI	ACTGG	3 cut(s)	76, 109, 248
BseXI	GCAGC	2 cut(s)	16, 60
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	76, 109, 248
BssMI	GATC	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstSFI	CTRYAG	3 cut(s)	46, 82, 198
BstV1I	GCAGC	2 cut(s)	16, 60
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	307
CviAII	CATG	2 cut(s)	55, 167
CviJI	RGCY	3 cut(s)	51, 123, 209
CviKI_1	RGCY	3 cut(s)	51, 123, 209
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	58, 170
FatI	CATG	2 cut(s)	54, 166
FauNDI	CATATG	2 cut(s)	20, 213
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	5, 49
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	5, 49
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	2 cut(s)	5, 49
HaeII	RGCGCY	1 cut(s)	308
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	58, 170
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	273
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	4, 48
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	58, 170
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	11, 19, 57, 90, 139, 261
Lsp1109I	GCAGC	2 cut(s)	16, 60
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	3 cut(s)	100, 113, 161
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	4 cut(s)	63, 156, 224, 253
MnlI	CCTC	1 cut(s)	141
MseI	TTAA	3 cut(s)	240, 252, 322
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	58, 170
NmuCI	GTSAC	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	6, 50
Psp1406I	AACGTT	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	240, 252, 322
SatI	GCNGC	2 cut(s)	5, 49
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	4 cut(s)	30, 53, 102, 125
SfcI	CTRYAG	3 cut(s)	46, 82, 198
Sse9I	AATT	4 cut(s)	63, 156, 224, 253
TaiI	ACGT	1 cut(s)	102
TasI	AATT	4 cut(s)	63, 156, 224, 253
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	240, 252, 322
Tru9I	TTAA	3 cut(s)	240, 252, 322
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	4, 48
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	43, 206
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.