Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Reverse (-)

8260608 .. 8262795

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAAAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAATCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGTGACCATGATGGAGTGTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCAAATAAATTGTGGGAGAGAGTTAAGCTGCCTGTAAACTATGAGAAGGCTCTTGAAATGATTGACAAACACTTGTTGTACTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACTAAAATGACTCAGATGCGTATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTAGTCACTACGCCTAGGAGGCAAATAAAGAGGGAGTCGAGAAGAGAGGAAAAGGCTATAAAAGCAGCTCAGTTGGATAAGGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACTGAAATATACAATTTATCTGACAGTGTGTTTAACAAACTGCTTGATAGAGAAATCGAAACCAACGACGAAGTTGAGAAAGAAGAGGAGGAGGAAGGAGTGATTGAATATGTTGAAGGCGATGATGAACTCGAAGCAGAGGAAGAAGAAGACATGGAAGACTTCTCTGGTCTTCCATCTAAGGAGTCTTACCTTGAAGGTGATGATCATGACTCAGATGACGAGGATGACGATGATGCTGAAGAACAAGTTGTGATTCATAAAAAGGGAAGAGCTTTAAAGAAGTCTGATGATAATGGAAAAGCAAAGAAGAAACCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGATGCAGACACAAGAAGATCCCTGAAAAGCCTTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

303

Amino Acids

35.76

Weight (kDa)

5.57

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	2e-37	Ribosomal L28e protein family
Mak16	PF04874	139 - 230	8.6e-22	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	1 cut(s)	882
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	906
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	272, 485, 508, 632, 641, 722
AluBI	AGCT	5 cut(s)	123, 209, 244, 464, 800
AluI	AGCT	5 cut(s)	123, 209, 244, 464, 800
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	882
AoxI	GGCC	2 cut(s)	57, 299
ApeKI	GCWGC	3 cut(s)	244, 313, 461
ApoI	RAATTY	1 cut(s)	906
AspA2I	CCTAGG	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	737
AvrII	CCTAGG	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	4 cut(s)	200, 681, 689, 690
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	231, 325, 473
BccI	CCATC	3 cut(s)	164, 490, 709
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BclI	TGATCA	1 cut(s)	730
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	415
BisI	GCNGC	3 cut(s)	245, 314, 462
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	3 cut(s)	246, 315, 463
BmgT120I	GGNCC	1 cut(s)	300
BmsI	GCATC	3 cut(s)	342, 751, 862
BpiI	GAAGAC	4 cut(s)	200, 681, 689, 690
BsaJI	CCNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	76, 302
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	757
BseMII	CTCAG	3 cut(s)	362, 479, 753
BseNI	ACTGG	2 cut(s)	76, 302
BseRI	GAGGAG	2 cut(s)	626, 629
BseXI	GCAGC	3 cut(s)	231, 325, 473
BshFI	GGCC	2 cut(s)	59, 301
BsiHKAI	GWGCWC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	59, 301
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	730, 887
BspANI	GGCC	2 cut(s)	59, 301
BspCNI	CTCAG	3 cut(s)	361, 478, 752
BspHI	TCATGA	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	882
BspQI	GCTCTTC	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	76, 302
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	730, 887
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	47, 551
Bst6I	CTCTTC	3 cut(s)	433, 603, 790
BstDEI	CTNAG	4 cut(s)	348, 465, 705, 739
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	2 cut(s)	733, 890
BstMBI	GATC	2 cut(s)	730, 887
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 458
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	231, 325, 473
BstV2I	GAAGAC	4 cut(s)	200, 681, 689, 690
BstX2I	RGATCY	1 cut(s)	887
BstYI	RGATCY	1 cut(s)	887
BsuRI	GGCC	2 cut(s)	59, 301
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	757
BtsIMutI	CAGTG	2 cut(s)	43, 556
BveI	ACCTGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	55, 167, 214, 679, 734
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	348, 465, 705, 739
DpnI	GATC	2 cut(s)	732, 889
DpnII	GATC	2 cut(s)	730, 887
DraI	TTTAAA	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	433, 603, 790
EarI	CTCTTC	3 cut(s)	433, 603, 790
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	58, 170, 217, 682, 737
FatI	CATG	5 cut(s)	54, 166, 213, 678, 733
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	3 cut(s)	245, 314, 462
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	245, 314, 462
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	3 cut(s)	245, 314, 462
HaeIII	GGCC	2 cut(s)	59, 301
Hin1II	CATG	5 cut(s)	58, 170, 217, 682, 737
HinfI	GANTC	7 cut(s)	75, 108, 346, 431, 710, 737, 781
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	351, 381, 547, 742, 814
Hpy188III	TCNNGA	3 cut(s)	269, 435, 734
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	4 cut(s)	256, 614, 635, 716
HpyCH4III	ACNGT	2 cut(s)	47, 551
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	4 cut(s)	4, 84, 313, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 458
HpyF3I	CTNAG	4 cut(s)	348, 465, 705, 739
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	5 cut(s)	58, 170, 217, 682, 737
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	730, 887
LguI	GCTCTTC	1 cut(s)	790
LpnPI	CCDG	7 cut(s)	11, 57, 90, 261, 283, 678, 905
Lsp1109I	GCAGC	3 cut(s)	231, 325, 473
LweI	GCATC	3 cut(s)	342, 751, 862
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	4 cut(s)	50, 100, 161, 400
MalI	GATC	2 cut(s)	732, 889
MboI	GATC	2 cut(s)	730, 887
MflI	RGATCY	1 cut(s)	887
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	3 cut(s)	224, 538, 906
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	340, 440, 719, 731
MmeI	TCCRAC	1 cut(s)	450
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	5 cut(s)	240, 324, 558, 803, 903
Msp20I	TGGCCA	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	415, 458
NdeII	GATC	2 cut(s)	730, 887
NlaIII	CATG	5 cut(s)	58, 170, 217, 682, 737
NmuCI	GTSAC	2 cut(s)	161, 400
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	733
PciSI	GCTCTTC	1 cut(s)	790
PcsI	WCGNNNNNNNCGW	2 cut(s)	588, 753
PfeI	GAWTC	3 cut(s)	75, 108, 781
PkrI	GCNGC	3 cut(s)	246, 315, 463
PleI	GAGTC	4 cut(s)	340, 439, 718, 731
PpsI	GAGTC	4 cut(s)	340, 439, 718, 731
Psp124BI	GAGCTC	1 cut(s)	211
Psp1406I	AACGTT	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	887
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	790
SaqAI	TTAA	5 cut(s)	240, 324, 558, 803, 903
SatI	GCNGC	3 cut(s)	245, 314, 462
Sau3AI	GATC	2 cut(s)	730, 887
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	4 cut(s)	340, 440, 719, 731
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	342, 751, 862
SfcI	CTRYAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	224, 538, 906
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	47, 551
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	5 cut(s)	66, 118, 434, 582, 657
TasI	AATT	3 cut(s)	224, 538, 906
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	3 cut(s)	75, 108, 781
Tru1I	TTAA	5 cut(s)	240, 324, 558, 803, 903
Tru9I	TTAA	5 cut(s)	240, 324, 558, 803, 903
TscAI	CASTG	2 cut(s)	50, 556
TseFI	GTSAC	2 cut(s)	161, 400
TseI	GCWGC	3 cut(s)	244, 313, 461
Tsp45I	GTSAC	2 cut(s)	161, 400
TspDTI	ATGAA	3 cut(s)	206, 666, 773
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	50, 556
XapI	RAATTY	1 cut(s)	906
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.