Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

27301617 .. 27305039

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCAGCACGACGAGGTCATATGGCAGGTCATCCGCCACAACCACTGCAGCTTCATGTCCAAAATTGAAACCGGAATATTCTGCAGAAACCCATATAACGTTACCGGGGTTTGTAACCGGAGCTCTTGCCCTCTCGCCAACAGTCGCTATGCCACCATTCGCGACCACGATGGGGTCTTCTATCTTTATATGAAAACTATAGAAAGAGCTCATATGCCAAACAAATTGTGGGAAAGAGTTAAGCTGCCAAGGAATTATGAGAAAGCACTCGAAATCATTGACAAATATCTGATGTATTGGCCTAAGTTTCTTGTACATAAAACAAAGCAACGGCTCACTAAAATGACTCAGATGCGGATACGCATGAGGAAACTTGCTTTGAAAACAAGGGAGAAAATAATGACAACACCGAGGAAGGAAATAAAGAGAGAAGCTAGAAGAGAGGAGAAGGCAGAAAAGGCTGCAGTCTTGGATAAGAGCATTGAGAAAGAACTATTAGAACGCCTTAGGAACAACGTTTATGGAGAGATATATAATTACCCTTTTGAAAAATACCAAGAGGTCCTTGAAGAGGAAGGTCAGAATACTGAAATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACTACGAGGAAGGTGAGATAGAATATGTTGCTGATGATCAGTTTGAAGAGGAGGAGGAGGATATTGAAGATATGGGTGGTCTAGCACTGAATCATTCACATGCAGATGATGATAATGTTGGAATGGATGAAGAGCCAGAAGTAGATACTGGCAAGAGAGGGAGGAAGTCTCGAAAGTTTGAGAAAGATGGAGTTGTCACCAAATCGAAGAAACCCAGGGTACATGTTGAGGTGGAGTATGAAGATGGTCGTGATAGACAAAAGGCAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

299

Amino Acids

35.64

Weight (kDa)

5.43

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	3.8e-39	Ribosomal L28e protein family
Mak16	PF04874	138 - 232	2.1e-23	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccII	CGCG	1 cut(s)	162
AciI	CCGC	2 cut(s)	34, 355
AclI	AACGTT	2 cut(s)	99, 516
AfaI	GTAC	2 cut(s)	315, 843
AfiI	CCNNNNNNNGG	2 cut(s)	172, 571
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	6 cut(s)	68, 382, 548, 569, 668, 689
AjnI	CCWGG	1 cut(s)	836
AluBI	AGCT	5 cut(s)	51, 123, 209, 244, 434
AluI	AGCT	5 cut(s)	51, 123, 209, 244, 434
Alw21I	GWGCWC	2 cut(s)	125, 211
Alw26I	GTCTC	1 cut(s)	795
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	4 cut(s)	4, 48, 244, 461
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	647, 811
AvaII	GGWCC	1 cut(s)	562
AxyI	CCTNAGG	1 cut(s)	506
BanII	GRGCYC	2 cut(s)	125, 211
BbsI	GAAGAC	2 cut(s)	169, 627
Bbv12I	GWGCWC	2 cut(s)	125, 211
BbvI	GCAGC	4 cut(s)	16, 60, 231, 448
BccI	CCATC	3 cut(s)	164, 803, 860
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	838
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	2 cut(s)	435, 704
BfmI	CTRYAG	4 cut(s)	46, 82, 198, 462
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	5, 49, 245, 462
BlsI	GCNGC	4 cut(s)	6, 50, 246, 463
Bme1390I	CCNGG	2 cut(s)	106, 838
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmrFI	CCNGG	2 cut(s)	106, 838
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	169, 627
BplI	GAGNNNNNCTC	2 cut(s)	775, 807
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	105, 248, 410, 836, 837
BsaWI	WCCGGW	2 cut(s)	71, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 571
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	5 cut(s)	105, 248, 410, 836, 837
BseGI	GGATG	2 cut(s)	30, 754
BseLI	CCNNNNNNNGG	2 cut(s)	172, 571
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	4 cut(s)	458, 686, 689, 692
BseXI	GCAGC	4 cut(s)	16, 60, 231, 448
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	125, 211
BsiSI	CCGG	3 cut(s)	72, 105, 118
BslI	CCNNNNNNNGG	2 cut(s)	172, 571
BsmAI	GTCTC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	125, 211
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	658
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	2 cut(s)	34, 355
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	3 cut(s)	50, 86, 466
BspMI	ACCTGC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	5 cut(s)	105, 248, 410, 836, 837
BssMI	GATC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	4 cut(s)	433, 564, 663, 747
BstAUI	TGTACA	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	303, 348, 506
BstENI	CCTNNNNNAGG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	30, 754
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	1 cut(s)	658
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	2 cut(s)	725, 848
BstSCI	CCNGG	2 cut(s)	104, 836
BstSFI	CTRYAG	4 cut(s)	46, 82, 198, 462
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	16, 60, 231, 448
BstV2I	GAAGAC	2 cut(s)	169, 627
Bsu36I	CCTNAGG	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	30, 754
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 707
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	314, 842
CviAII	CATG	4 cut(s)	55, 364, 722, 845
CviJI	RGCY	9 cut(s)	51, 123, 209, 244, 301, 334, 434, 461, 757
CviKI_1	RGCY	9 cut(s)	51, 123, 209, 244, 301, 334, 434, 461, 757
CviQI	GTAC	2 cut(s)	314, 842
DdeI	CTNAG	3 cut(s)	303, 348, 506
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
Eam1104I	CTCTTC	4 cut(s)	433, 564, 663, 747
EarI	CTCTTC	4 cut(s)	433, 564, 663, 747
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	123, 209
Eco130I	CCWWGG	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	125, 211
Eco47I	GGWCC	1 cut(s)	562
Eco53kI	GAGCTC	2 cut(s)	123, 209
Eco81I	CCTNAGG	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	123, 209
EcoNI	CCTNNNNNAGG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	836
EcoT14I	CCWWGG	1 cut(s)	248
EcoT38I	GRGCYC	2 cut(s)	125, 211
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	4 cut(s)	58, 367, 725, 848
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	4 cut(s)	54, 363, 721, 844
FauNDI	CATATG	2 cut(s)	20, 213
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	5, 49, 245, 462
FokI	GGATG	2 cut(s)	17, 761
FriOI	GRGCYC	2 cut(s)	125, 211
Fsp4HI	GCNGC	4 cut(s)	5, 49, 245, 462
FspBI	CTAG	2 cut(s)	435, 704
GluI	GCNGC	4 cut(s)	5, 49, 245, 462
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	3 cut(s)	72, 105, 118
Hin1II	CATG	4 cut(s)	58, 367, 725, 848
HinfI	GANTC	2 cut(s)	346, 712
HpaII	CCGG	3 cut(s)	72, 105, 118
HphI	GGTGA	2 cut(s)	647, 811
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	3 cut(s)	291, 351, 582
Hpy188III	TCNNGA	3 cut(s)	161, 792, 872
Hpy8I	GTNNAC	1 cut(s)	892
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	409, 442, 569, 626
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	99, 516
HpyCH4V	TGCA	5 cut(s)	4, 48, 84, 464, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	303, 348, 506
HpySE526I	ACGT	2 cut(s)	99, 516
Hsp92II	CATG	4 cut(s)	58, 367, 725, 848
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	1 cut(s)	658
LguI	GCTCTTC	1 cut(s)	747
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	8 cut(s)	11, 85, 118, 131, 756, 771, 823, 850
Lsp1109I	GCAGC	4 cut(s)	16, 60, 231, 448
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	435, 704
MaeII	ACGT	2 cut(s)	99, 516
MaeIII	GTNAC	3 cut(s)	100, 113, 817
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	125, 211
MluCI	AATT	4 cut(s)	63, 224, 253, 535
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	721
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	3 cut(s)	341, 720, 726
MspI	CCGG	3 cut(s)	72, 105, 118
MspR9I	CCNGG	2 cut(s)	106, 838
MvaI	CCWGG	1 cut(s)	838
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	106
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	4 cut(s)	58, 367, 725, 848
NmuCI	GTSAC	1 cut(s)	817
NruI	TCGCGA	1 cut(s)	162
NspI	RCATGY	2 cut(s)	725, 848
PasI	CCCWGGG	1 cut(s)	837
PciI	ACATGT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	6, 50, 246, 463
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	562
PscI	ACATGT	1 cut(s)	844
Psp124BI	GAGCTC	2 cut(s)	125, 211
Psp1406I	AACGTT	2 cut(s)	99, 516
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspPI	GGNCC	1 cut(s)	562
PspPPI	RGGWCCY	1 cut(s)	562
PstI	CTGCAG	3 cut(s)	50, 86, 466
PsyI	GACNNNGTC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	2 cut(s)	315, 843
RsaNI	GTAC	2 cut(s)	314, 842
RseI	CAYNNNNRTG	3 cut(s)	341, 720, 726
SacI	GAGCTC	2 cut(s)	125, 211
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	5, 49, 245, 462
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	106, 838
SduI	GDGCHC	2 cut(s)	125, 211
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	4 cut(s)	46, 82, 198, 462
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	3 cut(s)	341, 720, 726
Sse9I	AATT	4 cut(s)	63, 224, 253, 535
SsiI	CCGC	2 cut(s)	34, 355
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	2 cut(s)	435, 704
SstI	GAGCTC	2 cut(s)	125, 211
StyD4I	CCNGG	2 cut(s)	104, 836
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	102, 519
TaqI	TCGA	3 cut(s)	270, 793, 827
TasI	AATT	4 cut(s)	63, 224, 253, 535
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	50, 714
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	4 cut(s)	4, 48, 244, 461
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	4 cut(s)	43, 206, 765, 876
TspRI	CASTG	2 cut(s)	50, 714
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	562
XagI	CCTNNNNNAGG	1 cut(s)	569
XceI	RCATGY	2 cut(s)	725, 848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	2 cut(s)	435, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.