Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

946505 .. 950137

Gene Structure 3633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAGAACGACGAGGTCATATGGCAGGTTATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAAACCCATATAACGTCACTGGGATTTGTAACCGAAGCTCGTGCCCTCTGGCTAATAGTCGCTATGCCACCATTCGCGACCATGATGGAGTCTTCTATCTTTATATGAAAACTATAGAAAGAGCTCATATGCCAAACAAATTGTGGGAAAGAGTTAAGTTACCCAGGAATTATGAGAAAGCACTTGAAATTATTGACAAACATCTGATGTACTGGCCTAAGTTTCTCGCGCACAAAACAAAGCAACGGCTTACTAAAATGACCCAGATGAGGATACGCATGAGGAAGCTTGCTTTGAAAACAAGGGAGAAAATAATGACGACACCAAGGAAAGAGAAAAAGAGAGAGGCTAGAAGAGAGGAAAAGGCTGAAAAAGCCGCTGTGTTGGATAAGAGCATTGAGAGAGAACTATTAGAACGCCTCAAGAAAGGAGTTTATGGTGATGCATATAAAGATATATATAATTACCCCTTTGATAAATACCAAAAAGTTCTTGAAGGGGAAGAAATGCAGTTGGATACTGAGAGAGAAGAAGAGGAGGAGGAACCTGAGATAGAATATGTTGAAGGTTATGATGAACTTGAAGAGGAAGATGATATTGAAGATTTTGCTGGTTTTTCAATTGACAATTCTCATGCAGATGATGATAATGTTGGAAGTGAGGAAGAGGCAGAAGCAGTTACTCGCAAGAGAGAGAGAAAGGAATCTGCTTTTGCTTCTAGAAGATTTGAGAAAGATGAACCTGCTGCCAAATTGAAGAAGAAGCCGAGGGTACTTGTTGAGGTTGAGCATGAAGATTCTGGTGTTAGGCAAAAGGCAGTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

304

Amino Acids

36.1

Weight (kDa)

6.37

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	16, 835
AccII	CGCG	2 cut(s)	162, 314
AciI	CCGC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	296, 858
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	9 cut(s)	68, 272, 382, 581, 650, 668, 686, 705, 841
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	4 cut(s)	51, 123, 209, 373
AluI	AGCT	4 cut(s)	51, 123, 209, 373
Alw21I	GWGCWC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	48, 830
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	60, 817
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	250
BciVI	GTATCC	2 cut(s)	351, 595
BfaI	CTAG	2 cut(s)	435, 804
BfmI	CTRYAG	3 cut(s)	46, 82, 198
BfuAI	ACCTGC	2 cut(s)	16, 835
BfuI	GTATCC	2 cut(s)	351, 595
BisI	GCNGC	3 cut(s)	49, 462, 831
BlsI	GCNGC	3 cut(s)	50, 463, 832
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	250
BmrI	ACTGGG	2 cut(s)	81, 114
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	2 cut(s)	81, 114
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	248, 410, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	3 cut(s)	76, 109, 302
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	248, 410, 851
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	597, 624
BseNI	ACTGG	3 cut(s)	76, 109, 302
BseRI	GAGGAG	2 cut(s)	635, 638
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	60, 817
Bsh1236I	CGCG	2 cut(s)	162, 314
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	354
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	131, 211
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	598, 625
BspFNI	CGCG	2 cut(s)	162, 314
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	2 cut(s)	16, 835
BsrI	ACTGG	3 cut(s)	76, 109, 302
BssECI	CCNNGG	3 cut(s)	248, 410, 851
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	4 cut(s)	433, 612, 663, 744
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	303, 606, 633
BstFNI	CGCG	2 cut(s)	162, 314
BstHHI	GCGC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	3 cut(s)	46, 82, 198
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	162, 314
BstV1I	GCAGC	2 cut(s)	60, 817
BstV2I	GAAGAC	1 cut(s)	169
BsuI	GTATCC	2 cut(s)	351, 595
BsuRI	GGCC	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	43, 102, 907
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	2 cut(s)	16, 835
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	295, 857
CviAII	CATG	5 cut(s)	55, 167, 364, 719, 875
CviQI	GTAC	2 cut(s)	295, 857
DdeI	CTNAG	3 cut(s)	303, 606, 633
Eam1104I	CTCTTC	4 cut(s)	433, 612, 663, 744
EarI	CTCTTC	4 cut(s)	433, 612, 663, 744
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	58, 170, 367, 722, 878
FatI	CATG	5 cut(s)	54, 166, 363, 718, 874
FauNDI	CATATG	2 cut(s)	20, 213
Fnu4HI	GCNGC	3 cut(s)	49, 462, 831
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	49, 462, 831
FspBI	CTAG	2 cut(s)	435, 804
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	3 cut(s)	49, 462, 831
HaeIII	GGCC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	58, 170, 367, 722, 878
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	174, 788, 881
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	907
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	161, 508, 578, 804
Hpy8I	GTNNAC	1 cut(s)	907
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	575, 644
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	4, 48, 530, 595, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	303, 606, 633
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	58, 170, 367, 722, 878
HspAI	GCGC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	60, 817
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	435, 804
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	100, 113, 243, 763
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	2 cut(s)	131, 211
MluCI	AATT	8 cut(s)	63, 224, 253, 273, 547, 705, 712, 836
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	3 cut(s)	450, 579, 718
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	2 cut(s)	162, 314
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeI	CATATG	2 cut(s)	20, 213
NlaIII	CATG	5 cut(s)	58, 170, 367, 722, 878
NlaIV	GGNNCC	1 cut(s)	630
NmeAIII	GCCGAG	1 cut(s)	876
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	788, 881
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	50, 463, 832
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	2 cut(s)	296, 858
RsaNI	GTAC	2 cut(s)	295, 857
RseI	CAYNNNNRTG	1 cut(s)	723
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	49, 462, 831
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	131, 211
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	3 cut(s)	46, 82, 198
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	8 cut(s)	63, 224, 253, 273, 547, 705, 712, 836
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	2 cut(s)	435, 804
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	410
TaiI	ACGT	1 cut(s)	102
TasI	AATT	8 cut(s)	63, 224, 253, 273, 547, 705, 712, 836
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	788, 881
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	50, 109
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	48, 830
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	43, 206, 675, 837, 891
TspRI	CASTG	2 cut(s)	50, 109
Tth111I	GACNNNGTC	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	2 cut(s)	435, 804
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.