Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

8962472 .. 8965399

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAGCACGACGAAGTCATATGGCAGGTGATCAGGCACAAACACTGCAGCTTCATGTCCAAAATTGAAACTGGGATATTCTGTAGAAACCCATATAACGTTACTGGGATTTGTAACCGAAGCTCCTGCCCTCTCGCTAATAGTCGCTATGCTACAATTCGTGACCATGATGGAGTGTTTTATCTTTATATGAAAACTATAGAAAGAGCCCATATGCCGAACAAATTGTGGGAAAGAGTTAAGTTGCCAGTTAATTATGAGAAAGCACTTGGAATTATTGATAAACACTTGACGTATTGGCCTAAGTTTCTTGTACATAAAACAAAGCAACGGCTGACTAAAATGACTCAGATGCGGATACGCATGAGGAAGCTTGCTTTGAAAACGAGGGAGAAGATAGTGACAATACCAAGGAAAGAGATAAAAAGAGAGGCCAGAAGAGAGGAAAAGGCTGAAAAAGCTGCGGTGTTGGATAAGAGCATCGAGAAAGAACTATTAAGCCGCCTTAAGGAAGGAATGTATGGTGATATATATAACTATCCCTTTGATAAATTCCAAAAACTTATTGAAGGGGAAGAAATGGAGGTGGATACTGAAAGAGAACAAGAAGATGAGGAGGAGGCTGAAATTGAATATGTTGAAGGTTATGATGAACTTGAAGAGGAAGATGATATTGAAGATCTTGGTGGTTATGCAATCGACCATTCTCATGCAGACGATGATAATGGTAGAGCTAAATTCTATCATCTTAACATAATGCAGATGATCATGATGATATTCCCTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

263

Amino Acids

31.39

Weight (kDa)

5.98

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	5.3e-39	Ribosomal L28e protein family
Mak16	PF04874	138 - 227	1.2e-22	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AciI	CCGC	3 cut(s)	355, 464, 502
AclI	AACGTT	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	551, 737
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	7 cut(s)	68, 382, 569, 632, 641, 659, 677
AluBI	AGCT	5 cut(s)	51, 123, 373, 461, 734
AluI	AGCT	5 cut(s)	51, 123, 373, 461, 734
AoxI	GGCC	2 cut(s)	299, 432
ApeKI	GCWGC	3 cut(s)	4, 48, 461
ApoI	RAATTY	2 cut(s)	551, 737
AsuHPI	GGTGA	2 cut(s)	40, 536
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	16, 60, 448
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciVI	GTATCC	2 cut(s)	351, 583
BclI	TGATCA	2 cut(s)	30, 765
BfmI	CTRYAG	3 cut(s)	46, 82, 198
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	351, 583
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	4 cut(s)	5, 49, 462, 502
BlsI	GCNGC	4 cut(s)	6, 50, 463, 503
BmrI	ACTGGG	2 cut(s)	81, 114
BmsI	GCATC	2 cut(s)	342, 489
BmuI	ACTGGG	2 cut(s)	81, 114
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	76, 109, 248
BseDI	CCNNGG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	76, 109, 248
BseRI	GAGGAG	2 cut(s)	629, 632
BseXI	GCAGC	3 cut(s)	16, 60, 448
BshFI	GGCC	2 cut(s)	301, 434
BslI	CCNNNNNNNGG	1 cut(s)	508
BsnI	GGCC	2 cut(s)	301, 434
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	30, 679, 765
BspACI	CCGC	3 cut(s)	355, 464, 502
BspANI	GGCC	2 cut(s)	301, 434
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	768
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	76, 109, 248
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	3 cut(s)	30, 679, 765
BssT1I	CCWWGG	1 cut(s)	410
Bst6I	CTCTTC	2 cut(s)	433, 654
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	303, 348
BstKTI	GATC	3 cut(s)	33, 682, 768
BstMBI	GATC	3 cut(s)	30, 679, 765
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstSFI	CTRYAG	3 cut(s)	46, 82, 198
BstV1I	GCAGC	3 cut(s)	16, 60, 448
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuI	GTATCC	2 cut(s)	351, 583
BsuRI	GGCC	2 cut(s)	301, 434
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	768
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	55, 167, 364, 710, 769
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	303, 348
DpnI	GATC	3 cut(s)	32, 681, 767
DpnII	GATC	3 cut(s)	30, 679, 765
Eam1104I	CTCTTC	2 cut(s)	433, 654
EarI	CTCTTC	2 cut(s)	433, 654
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	58, 170, 367, 713, 772
FatI	CATG	5 cut(s)	54, 166, 363, 709, 768
FauNDI	CATATG	2 cut(s)	20, 213
FbaI	TGATCA	2 cut(s)	30, 765
Fnu4HI	GCNGC	4 cut(s)	5, 49, 462, 502
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	5, 49, 462, 502
GluI	GCNGC	4 cut(s)	5, 49, 462, 502
HaeIII	GGCC	2 cut(s)	301, 434
Hin1II	CATG	5 cut(s)	58, 170, 367, 713, 772
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	40, 536
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	3 cut(s)	161, 484, 769
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	506, 563, 635
HpyCH4IV	ACGT	2 cut(s)	99, 293
HpyCH4V	TGCA	6 cut(s)	4, 48, 695, 713, 760, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	303, 348
HpySE526I	ACGT	2 cut(s)	99, 293
Hsp92II	CATG	5 cut(s)	58, 170, 367, 713, 772
Ksp22I	TGATCA	2 cut(s)	30, 765
Kzo9I	GATC	3 cut(s)	30, 679, 765
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	11, 19, 57, 90, 139, 261, 448
Lsp1109I	GCAGC	3 cut(s)	16, 60, 448
LweI	GCATC	2 cut(s)	342, 489
MaeII	ACGT	2 cut(s)	99, 293
MaeIII	GTNAC	4 cut(s)	100, 113, 161, 400
MalI	GATC	3 cut(s)	32, 681, 767
MboI	GATC	3 cut(s)	30, 679, 765
MboII	GAAGA	7 cut(s)	406, 450, 587, 620, 671, 677, 689
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	63, 156, 224, 253, 273, 551, 627, 737
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	450
MseI	TTAA	5 cut(s)	240, 252, 497, 507, 750
MslI	CAYNNNNRTG	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	3 cut(s)	30, 679, 765
NlaIII	CATG	5 cut(s)	58, 170, 367, 713, 772
NmuCI	GTSAC	2 cut(s)	161, 400
PagI	TCATGA	1 cut(s)	768
PaqCI	CACCTGC	1 cut(s)	16
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	6, 50, 463, 503
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	240, 252, 497, 507, 750
SatI	GCNGC	4 cut(s)	5, 49, 462, 502
Sau3AI	GATC	3 cut(s)	30, 679, 765
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	342, 489
SfcI	CTRYAG	3 cut(s)	46, 82, 198
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	8 cut(s)	63, 156, 224, 253, 273, 551, 627, 737
SsiI	CCGC	3 cut(s)	355, 464, 502
StyI	CCWWGG	1 cut(s)	410
TaiI	ACGT	2 cut(s)	102, 296
TaqI	TCGA	2 cut(s)	483, 699
TasI	AATT	8 cut(s)	63, 156, 224, 253, 273, 551, 627, 737
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	504
Tru1I	TTAA	5 cut(s)	240, 252, 497, 507, 750
Tru9I	TTAA	5 cut(s)	240, 252, 497, 507, 750
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	161, 400
TseI	GCWGC	3 cut(s)	4, 48, 461
Tsp45I	GTSAC	2 cut(s)	161, 400
TspDTI	ATGAA	3 cut(s)	43, 206, 666
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	2 cut(s)	551, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.