Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003431

Physical Location & Seq

Genomic Coordinates Forward (+)

55480144 .. 55484167

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAGCACGACGAGGTCATATGGCAGGTCATCAGGCACAAGCACTGCAGCTTCATGTCCAAAATCGAAACCGGGATTTTCTGTAGAAACCCTTATAACGTCACCGGGATTTGTAATCGGAGCTCTTGCCCTCTGGCCAATAGTCGCTACGCCACCATTCGCGACCACGATGGAGTCTTCTATCTTTATATGAAAACTATAGAAAGAGCTCATATGCCAAACAAATTGTGGGAAAGAGTTAAGTTGCCCAGGAATTATGAGAAAGCACTTGAAATCATCGACAAACATCTGATGTATTGGCCTAAGTTTCTTGTACATAAAACAAAGCAACGGCTCACTAAAATGACTCAGATGCGGATACGCATGAGGAAGCTTGCTTTGAAAACAAGGGAGAAAATAATGACAACACCAAGGAAGGAAATAAAGAGAGAAGCTAGAAGAGAGGAGAAGGCTGAAAAAGCTGCAGTCTTGGATAAGAGCATTGAGAAAGAACTATTAGAACGCCTTAAGAATGGAGTTTATGGTGATCTACATAAAGATATATATAATTACCCTTTTGATAAATACCAAAAAGTCCTTGAAGGGGAAGAACAGAATACTGAAAGAGAAGAAGAAGAAGACTATGAGGATGGTGAGATAGAATATGTTGAAGGTTATGACGAGCTTGAAGAGGAGGATGATATTGAAGATCTGGGTGGTCATGCAATGGACTATTCTCATGCAGATGATGATAGTGTTGGAATGGATGTAGAGCTAGAAGCAGGTACTGGCAAGAGAGGGAGAAAGTCTCGAAAGTTTGAGAAAGATGGAGCTGTTGCCAAATCGAAGAAACCTAGGGTACTTGTTGAGGTCGAGTATGAAGATGGTCGTGATAGACAAAAGGCAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mak16 Ribosomal_L28e

Protein Analysis

297

Amino Acids

35.24

Weight (kDa)

6.45

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	2.1e-39	Ribosomal L28e protein family
Mak16	PF04874	138 - 230	5.7e-21	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23280
fragaria_vesca	FvH4_4g25580
malus_domestica	MD03G1198200.v1.1 MD11G1214400.v1.1
prunus_persica	Prupe.1G244800_v2.0.a1 Prupe.1G244800_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G011700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1 Prupe.8G016700_v2.0.a1
pyrus_communis	pycom03g14980 pycom11g18880
rosa_chinensis	RchiOBHm_Chr4g0433011 RchiOBHm_Chr7g0190541
rosa_laevigata	RLG00000004517 RLG00000006793
rosa_multiflora	Rmu_sc0001762.1_g000037 Rmu_sc0001784.1_g000019
rosa_roxburghii	Rroxscaffold_3G00264520 Rroxscaffold_5G00374450
rosa_rugosa	Rorug04G0265000 Rorug04G0265000 Rorug06G0505000
rosa_samantha	Rh4AG318600 Rh4BG326700 Rh4CG342100 Rh4DG321900 Rh7AG111500 Rh7BG114500 Rh7CG116300 Rh7DG115400
rosa_wichuraiana	Rw4G027710 Rw7G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
Acc36I	ACCTGC	2 cut(s)	16, 752
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	3 cut(s)	315, 766, 840
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	272, 382, 581, 650, 668, 686
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	9 cut(s)	51, 123, 209, 373, 434, 461, 664, 754, 812
AluI	AGCT	9 cut(s)	51, 123, 209, 373, 434, 461, 664, 754, 812
Alw21I	GWGCWC	2 cut(s)	125, 211
Alw26I	GTCTC	1 cut(s)	792
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	2 cut(s)	135, 299
ApeKI	GCWGC	3 cut(s)	4, 48, 461
AspA2I	CCTAGG	1 cut(s)	833
AsuC2I	CCSGG	2 cut(s)	73, 106
AsuHPI	GGTGA	3 cut(s)	94, 536, 644
AvrII	CCTAGG	1 cut(s)	833
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	125, 211
BbsI	GAAGAC	2 cut(s)	169, 624
Bbv12I	GWGCWC	2 cut(s)	125, 211
BbvI	GCAGC	3 cut(s)	16, 60, 448
BccI	CCATC	4 cut(s)	164, 623, 800, 857
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	250
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	73, 106
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	435, 755, 834
BfmI	CTRYAG	4 cut(s)	46, 82, 198, 462
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	16, 752
BfuI	GTATCC	1 cut(s)	351
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	3 cut(s)	5, 49, 462
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	3 cut(s)	6, 50, 463
Bme1390I	CCNGG	3 cut(s)	73, 106, 250
BmrFI	CCNGG	3 cut(s)	73, 106, 250
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	169, 624
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
BpuMI	CCSGG	2 cut(s)	73, 106
BsaJI	CCNNGG	3 cut(s)	248, 410, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	248, 410, 833
BseGI	GGATG	3 cut(s)	634, 682, 751
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	2 cut(s)	458, 686
BseXI	GCAGC	3 cut(s)	16, 60, 448
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	137, 301
BsiHKAI	GWGCWC	2 cut(s)	125, 211
BsiSI	CCGG	2 cut(s)	72, 105
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	792
BsnI	GGCC	2 cut(s)	137, 301
Bsp1286I	GDGCHC	2 cut(s)	125, 211
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	526, 688
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	137, 301
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	2 cut(s)	50, 466
BspMI	ACCTGC	2 cut(s)	16, 752
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	3 cut(s)	248, 410, 833
BssMI	GATC	2 cut(s)	526, 688
BssT1I	CCWWGG	2 cut(s)	410, 833
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	433, 663
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	303, 348
BstF5I	GGATG	3 cut(s)	634, 682, 751
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	529, 691
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	2 cut(s)	526, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	71, 104, 248
BstSFI	CTRYAG	4 cut(s)	46, 82, 198, 462
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	16, 60, 448
BstV2I	GAAGAC	2 cut(s)	169, 624
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	137, 301
BtsCI	GGATG	3 cut(s)	634, 682, 751
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	2 cut(s)	16, 752
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	767
Csp6I	GTAC	3 cut(s)	314, 765, 839
CviAII	CATG	4 cut(s)	55, 364, 701, 719
CviQI	GTAC	3 cut(s)	314, 765, 839
DdeI	CTNAG	2 cut(s)	303, 348
DpnI	GATC	2 cut(s)	528, 690
DpnII	GATC	2 cut(s)	526, 688
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	433, 663
EarI	CTCTTC	2 cut(s)	433, 663
Ecl136II	GAGCTC	2 cut(s)	123, 209
Eco130I	CCWWGG	2 cut(s)	410, 833
Eco24I	GRGCYC	2 cut(s)	125, 211
Eco53kI	GAGCTC	2 cut(s)	123, 209
EcoICRI	GAGCTC	2 cut(s)	123, 209
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	410, 833
EcoT38I	GRGCYC	2 cut(s)	125, 211
ErhI	CCWWGG	2 cut(s)	410, 833
FaeI	CATG	4 cut(s)	58, 367, 704, 722
FatI	CATG	4 cut(s)	54, 363, 700, 718
FauNDI	CATATG	2 cut(s)	20, 213
Fnu4HI	GCNGC	3 cut(s)	5, 49, 462
FokI	GGATG	3 cut(s)	641, 689, 758
FriOI	GRGCYC	2 cut(s)	125, 211
Fsp4HI	GCNGC	3 cut(s)	5, 49, 462
FspBI	CTAG	3 cut(s)	435, 755, 834
GluI	GCNGC	3 cut(s)	5, 49, 462
HaeIII	GGCC	2 cut(s)	137, 301
HapII	CCGG	2 cut(s)	72, 105
Hin1II	CATG	4 cut(s)	58, 367, 704, 722
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	174, 346
HpaII	CCGG	2 cut(s)	72, 105
HphI	GGTGA	3 cut(s)	94, 536, 644
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	3 cut(s)	120, 291, 351
Hpy188III	TCNNGA	3 cut(s)	161, 789, 869
Hpy8I	GTNNAC	1 cut(s)	889
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	409, 442, 575, 644
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	4, 48, 464, 704, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	303, 348
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	58, 367, 704, 722
Kzo9I	GATC	2 cut(s)	526, 688
LmnI	GCTCC	2 cut(s)	120, 809
Lsp1109I	GCAGC	3 cut(s)	16, 60, 448
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	3 cut(s)	435, 755, 834
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	528, 690
MboI	GATC	2 cut(s)	526, 688
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	2 cut(s)	125, 211
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	3 cut(s)	224, 253, 547
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	2 cut(s)	183, 340
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	7, 141, 360, 436, 619, 664, 667, 770, 841
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	240, 507
MslI	CAYNNNNRTG	2 cut(s)	341, 723
Msp20I	TGGCCA	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	72, 105
MspR9I	CCNGG	3 cut(s)	73, 106, 250
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	2 cut(s)	73, 106
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	2 cut(s)	526, 688
NlaIII	CATG	4 cut(s)	58, 367, 704, 722
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	6, 50, 463
PleI	GAGTC	2 cut(s)	182, 340
PpsI	GAGTC	2 cut(s)	182, 340
PsiI	TTATAA	1 cut(s)	96
Psp124BI	GAGCTC	2 cut(s)	125, 211
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	50, 466
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	688
PsyI	GACNNNGTC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	3 cut(s)	315, 766, 840
RsaNI	GTAC	3 cut(s)	314, 765, 839
RseI	CAYNNNNRTG	2 cut(s)	341, 723
SacI	GAGCTC	2 cut(s)	125, 211
SaqAI	TTAA	2 cut(s)	240, 507
SatI	GCNGC	3 cut(s)	5, 49, 462
Sau3AI	GATC	2 cut(s)	526, 688
SchI	GAGTC	2 cut(s)	183, 340
ScrFI	CCNGG	3 cut(s)	73, 106, 250
SduI	GDGCHC	2 cut(s)	125, 211
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	4 cut(s)	46, 82, 198, 462
SmiMI	CAYNNNNRTG	2 cut(s)	341, 723
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	224, 253, 547
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	3 cut(s)	435, 755, 834
SstI	GAGCTC	2 cut(s)	125, 211
StyD4I	CCNGG	3 cut(s)	71, 104, 248
StyI	CCWWGG	2 cut(s)	410, 833
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	5 cut(s)	66, 279, 790, 824, 852
TasI	AATT	3 cut(s)	224, 253, 547
TatI	WGTACW	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	240, 507
Tru9I	TTAA	2 cut(s)	240, 507
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	4, 48, 461
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	43, 206, 873
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	833
XspI	CTAG	3 cut(s)	435, 755, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.