Rmu_sc0001784.1_g000019

Belongs to the MAK16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001784.1
OG0003431
Physical Location & Seq
Reverse (-)
67165 .. 68671
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001784.1_g000019.1.cds

Sequence Viewer

Length: 261 bp
atgcagcacgatgaggtcatatggcaggttatcaggcacaagcactgcagcttcatgtcgaaaattgaaaccgggatattctgtagaaacccttataacgtttccaggatctgtaatcagagctcgtgccctccggccaatagtcgctacgccaccattcgcgaccacgacgaggtagcaatttggagtgaatgctggcttgtgttgattggttcaagtgtttgttttctgacttctgctgctactggtaacgctaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mak16 Ribosomal_L28e

Protein Analysis

86

Amino Acids

9.75

Weight (kDa)

6.87

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 16
AccII CGCG 1 cut(s) 162
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 68, 216
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 2 cut(s) 51, 123
AluI AGCT 2 cut(s) 51, 123
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 111
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 4, 48, 239
AsuC2I CCSGG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 125
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 16, 60, 226
BciT130I CCWGG 1 cut(s) 106
BcnI CCSGG 1 cut(s) 73
BfmI CTRYAG 2 cut(s) 46, 82
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 5, 49, 240
BlsI GCNGC 3 cut(s) 6, 50, 241
Bme1390I CCNGG 2 cut(s) 73, 106
BmrFI CCNGG 2 cut(s) 73, 106
BpuMI CCSGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 3 cut(s) 16, 60, 226
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 2 cut(s) 72, 134
BslI CCNNNNNNNGG 1 cut(s) 172
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 125, 131
Bsp143I GATC 1 cut(s) 108
Bsp68I TCGCGA 1 cut(s) 162
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 250
BssMI GATC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 197
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 71, 104
BstSFI CTRYAG 2 cut(s) 46, 82
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 16, 60, 226
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
BtuMI TCGCGA 1 cut(s) 162
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 111
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 51, 123, 137, 199
CviKI_1 RGCY 4 cut(s) 51, 123, 137, 199
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 20, 22, 56, 96
FatI CATG 1 cut(s) 54
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 3 cut(s) 5, 49, 240
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 5, 49, 240
GluI GCNGC 3 cut(s) 5, 49, 240
HaeIII GGCC 1 cut(s) 137
HapII CCGG 2 cut(s) 72, 134
Hin1II CATG 1 cut(s) 58
HpaII CCGG 2 cut(s) 72, 134
Hpy188I TCNGA 2 cut(s) 120, 231
Hpy188III TCNNGA 1 cut(s) 161
Hpy99I CGWCG 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 4, 48
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 8 cut(s) 11, 19, 85, 91, 118, 147, 181, 231
Lsp1109I GCAGC 3 cut(s) 16, 60, 226
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 248
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 125, 131
MluCI AATT 3 cut(s) 63, 180, 256
MnlI CCTC 3 cut(s) 7, 141, 166
MspI CCGG 2 cut(s) 72, 134
MspR9I CCNGG 2 cut(s) 73, 106
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 162
NciI CCSGG 1 cut(s) 73
NdeI CATATG 1 cut(s) 20
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 58
NruI TCGCGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 3 cut(s) 6, 50, 241
PsiI TTATAA 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 125
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PstI CTGCAG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 108
RruI TCGCGA 1 cut(s) 162
SacI GAGCTC 1 cut(s) 125
SatI GCNGC 3 cut(s) 5, 49, 240
Sau3AI GATC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 73, 106
SduI GDGCHC 2 cut(s) 125, 131
SetI ASST 6 cut(s) 18, 30, 53, 102, 125, 177
SfcI CTRYAG 2 cut(s) 46, 82
Sse9I AATT 3 cut(s) 63, 180, 256
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 71, 104
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 63, 180, 256
TscAI CASTG 1 cut(s) 50
TseI GCWGC 3 cut(s) 4, 48, 239
TspDTI ATGAA 1 cut(s) 43
TspRI CASTG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.