RLG00000006789

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
10546314 .. 10547871
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006789

Sequence Viewer

Length: 1287 bp
ATGGAAGAAGCATTCAGAAAGCTCAACGGCTTCACCCCCACGTCCCAACCCGACCCCATTCCCGTCCCCTCCAAAAAGTCAACCGCCGCTGCCGCCTCAACCACCACCAACAAGCGCACCCTCAAGGATGCCCCCGCCGGCTCTGCCTCCACAATGCGATACCGCGGCGTTCGGCGCCGCCCGTGGGGCCGGTACGCTGCGGAGATCAGGGACCCGCACTCCAAGGAAAGACGGTGGCTCGGAACCTTCGACACCGCCGAGGAGGCTGCATGTGCCTACGACTACGCCGCCCGAACCATGCGCGGCGTTAAGGCCCGCACCAACTTCGTTTACCCCGCCACAACGCACGACCATCTCGTTCCGGCATTCACTTTCCACCACCCGAAGCAATCTCAGCCGTCGTTTAAGAACCAGAGCAACGCTCGCGGCTACGGTCAGTACGTTCCCAACTGGCCACCGTTTGCGACGTATCCAAATGATTTTTCCGGGTCTGGTTCCGACAGGAGTGGCACCACTACTAATACTGTTAACAGTACTGCTGCTTCTTTGAACATGCTTTTCTTGAGGAATTTCATCAATAGTTCTTCTCCATCCCAAAACTCTTCTTCGGTTGTCTCGCCAAACCCTCCTCACTCTGAAGCTCAGTGCTTTACCCAAAACCAGTTTCAGTACACAAATGGCTCTTCTTCACCTAATTTCTCTTCTGGTGGTTGCAGCTCTTTTGTCAACAACAATACCACTACCTCTGGTACTACGACTAGTCATGGACGCTCATCTTCATCTTTGATGATGAATACTACTAGTAGTGGTTGTGCTACTCTCCATGAGCTTCCGGTCATGGAGAGCTCAAAAAAAACAGCCACCACCGCGACTAGTTTTGTTGACTCGGACTTCTTTCCTGTGGAGTCATCAGATACCGGGTTGTTAGAGGAGGTGATTCACCAGTTCTTCCCAAAGCCCTTTTCCAAGGAATCCAACCCTCCGAAATCTGTGGAGTATTATACTCCTACCTCCTTTGATTCAACGTTGGAGGTAAAAGAAGAGCAGCAGCCACATGTGTGTTCCGTTGATTTTGATTACCAGCAACAGCAGCAGCATCAACAACACCAACAACTTGGAAGTTTCAACGGAGTTCAGGAAGTGGCTGAGCAGACCGTACCGTTCTATAATGATCTGCCAGTGAACTTCCAGAGTAACAGTGCAGATCACTCAATGGTGGTTATGGATCACAGCATGTTCCAGCAGTACTACTATCCCGAGTTTGTGGGTAGCTTGCAGAATGCCTGA

Protein Analysis

429

Amino Acids

47.37

Weight (kDa)

6.39

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 53 - 102 4.6e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016831)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25630
malus_domestica MD13G1101100.v1.1 MD16G1101400.v1.1
prunus_persica Prupe.1G245500_v2.0.a1
pyrus_communis pycom13g08820 pycom16g08590
rosa_chinensis RchiOBHm_Chr4g0433071
rosa_laevigata RLG00000006789
rosa_multiflora Rmu_sc0001190.1_g000018
rosa_rugosa Rorug04G0265000
rosa_samantha Rh4BG327200 Rh4CG342600 Rh4DG322200
rosa_wichuraiana Rw4G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 174, 509
AccII CGCG 4 cut(s) 165, 303, 426, 869
AclI AACGTT 1 cut(s) 1025
AclWI GGATC 1 cut(s) 1233
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 7 cut(s) 194, 440, 535, 671, 751, 1158, 1247
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 1054
AgsI TTSAA 3 cut(s) 550, 1023, 1126
AhlI ACTAGT 3 cut(s) 758, 800, 872
AjiI CACGTC 1 cut(s) 42
AjuI GAANNNNNNNTTGG 6 cut(s) 466, 498, 648, 680, 946, 978
AleI CACNNNNGTG 1 cut(s) 1057
AluBI AGCT 6 cut(s) 22, 641, 717, 829, 846, 1272
AluI AGCT 6 cut(s) 22, 641, 717, 829, 846, 1272
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 1 cut(s) 1233
Ama87I CYCGRG 1 cut(s) 1256
AoxI GGCC 3 cut(s) 187, 312, 452
ApeKI GCWGC 9 cut(s) 89, 197, 266, 539, 714, 1045, 1048, 1090, 1093
ApoI RAATTY 1 cut(s) 568
AspLEI GCGC 3 cut(s) 117, 177, 303
AspS9I GGNCC 3 cut(s) 187, 211, 313
AsuC2I CCSGG 2 cut(s) 487, 919
AsuHPI GGTGA 4 cut(s) 25, 681, 932, 946
AvaI CYCGRG 1 cut(s) 1256
AvaII GGWCC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 454
BanI GGYRCC 2 cut(s) 174, 509
BanII GRGCYC 1 cut(s) 848
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
Bbv12I GWGCWC 1 cut(s) 848
BbvI GCAGC 9 cut(s) 76, 184, 253, 526, 726, 1057, 1060, 1102, 1105
BccI CCATC 2 cut(s) 360, 598
BceAI ACGGC 2 cut(s) 43, 382
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 307, 341
BciVI GTATCC 1 cut(s) 480
BcnI CCSGG 2 cut(s) 487, 919
BcoDI GTCTC 1 cut(s) 619
BcuI ACTAGT 3 cut(s) 758, 800, 872
BfaI CTAG 3 cut(s) 759, 801, 873
BfoI RGCGCY 1 cut(s) 178
BfuI GTATCC 1 cut(s) 480
BglI GCCNNNNNGGC 2 cut(s) 186, 263
BlpI GCTNAGC 1 cut(s) 1146
BmcAI AGTACT 2 cut(s) 535, 1247
Bme1390I CCNGG 2 cut(s) 487, 919
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 1256
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 187, 211, 313
BmiI GGNNCC 7 cut(s) 176, 188, 212, 213, 244, 496, 511
BmrFI CCNGG 2 cut(s) 487, 919
BmsI GCATC 2 cut(s) 118, 1105
BplI GAGNNNNNCTC 2 cut(s) 406, 438
Bpu1102I GCTNAGC 1 cut(s) 1146
BpuEI CTTGAG 2 cut(s) 107, 583
BpuMI CCSGG 2 cut(s) 487, 919
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 163, 182, 222, 258, 966
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 2 cut(s) 137, 189
Bse1I ACTGG 4 cut(s) 455, 661, 943, 1178
BseDI CCNNGG 5 cut(s) 163, 182, 222, 258, 966
BseGI GGATG 2 cut(s) 133, 590
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 407, 656, 1137
BseNI ACTGG 4 cut(s) 455, 661, 943, 1178
BseRI GAGGAG 3 cut(s) 275, 618, 944
BseXI GCAGC 9 cut(s) 76, 184, 253, 526, 726, 1057, 1060, 1102, 1105
BsgI GTGCAG 1 cut(s) 1221
Bsh1236I CGCG 4 cut(s) 165, 303, 426, 869
BshFI GGCC 3 cut(s) 189, 314, 454
BshNI GGYRCC 2 cut(s) 174, 509
BsiHKAI GWGCWC 1 cut(s) 848
BsiHKCI CYCGRG 1 cut(s) 1256
BsiSI CCGG 6 cut(s) 138, 190, 362, 486, 833, 918
BslFI GGGAC 3 cut(s) 28, 50, 224
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 619
BsmFI GGGAC 3 cut(s) 28, 50, 224
BsmI GAATGC 3 cut(s) 11, 365, 1285
BsnI GGCC 3 cut(s) 189, 314, 454
BsoBI CYCGRG 1 cut(s) 1256
Bsp1286I GDGCHC 1 cut(s) 848
Bsp143I GATC 4 cut(s) 204, 1171, 1204, 1225
Bsp1720I GCTNAGC 1 cut(s) 1146
BspANI GGCC 3 cut(s) 189, 314, 454
BspCNI CTCAG 3 cut(s) 406, 655, 1138
BspFNI CGCG 4 cut(s) 165, 303, 426, 869
BspLI GGNNCC 7 cut(s) 176, 188, 212, 213, 244, 496, 511
BspPI GGATC 1 cut(s) 1233
BspQI GCTCTTC 2 cut(s) 688, 1035
BspT107I GGYRCC 2 cut(s) 174, 509
BsrFI RCCGGY 2 cut(s) 137, 189
BsrI ACTGG 4 cut(s) 455, 661, 943, 1178
BssAI RCCGGY 2 cut(s) 137, 189
BssECI CCNNGG 5 cut(s) 163, 182, 222, 258, 966
BssMI GATC 4 cut(s) 204, 1171, 1204, 1225
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 2 cut(s) 222, 966
Bst4CI ACNGT 8 cut(s) 234, 434, 459, 526, 533, 1156, 1161, 1199
Bst6I CTCTTC 4 cut(s) 607, 688, 706, 1035
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 4 cut(s) 139, 316, 424, 1274
BstDEI CTNAG 3 cut(s) 393, 642, 1146
BstDSI CCRYGG 2 cut(s) 163, 182
BstF5I GGATG 2 cut(s) 133, 590
BstFNI CGCG 4 cut(s) 165, 303, 426, 869
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 3 cut(s) 117, 177, 303
BstKTI GATC 4 cut(s) 207, 1174, 1207, 1228
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 4 cut(s) 204, 1171, 1204, 1225
BstNSI RCATGY 4 cut(s) 273, 556, 1058, 1237
BstSCI CCNGG 2 cut(s) 485, 917
BstUI CGCG 4 cut(s) 165, 303, 426, 869
BstV1I GCAGC 9 cut(s) 76, 184, 253, 526, 726, 1057, 1060, 1102, 1105
BstXI CCANNNNNNTGG 1 cut(s) 1115
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 189, 314, 454
BtgI CCRYGG 2 cut(s) 163, 182
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 2 cut(s) 133, 590
BtsIMutI CAGTG 3 cut(s) 650, 1185, 1204
Cac8I GCNNGC 4 cut(s) 139, 316, 424, 1274
CfoI GCGC 3 cut(s) 117, 177, 303
Cfr10I RCCGGY 2 cut(s) 137, 189
Cfr13I GGNCC 3 cut(s) 187, 211, 313
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 1 cut(s) 777
Csp6I GTAC 7 cut(s) 193, 439, 534, 670, 750, 1157, 1246
CviAII CATG 8 cut(s) 270, 298, 553, 764, 824, 838, 1055, 1234
CviQI GTAC 7 cut(s) 193, 439, 534, 670, 750, 1157, 1246
DdeI CTNAG 3 cut(s) 393, 642, 1146
DinI GGCGCC 1 cut(s) 176
DpnI GATC 4 cut(s) 206, 1173, 1206, 1227
DpnII GATC 4 cut(s) 204, 1171, 1204, 1225
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 4 cut(s) 607, 688, 706, 1035
EarI CTCTTC 4 cut(s) 607, 688, 706, 1035
Ecl136II GAGCTC 1 cut(s) 846
Eco130I CCWWGG 2 cut(s) 222, 966
Eco24I GRGCYC 1 cut(s) 848
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 1256
EcoICRI GAGCTC 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 222, 966
EcoT38I GRGCYC 1 cut(s) 848
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 2 cut(s) 222, 966
FaeI CATG 8 cut(s) 273, 301, 556, 767, 827, 841, 1058, 1237
FaqI GGGAC 3 cut(s) 28, 50, 224
FatI CATG 8 cut(s) 269, 297, 552, 763, 823, 837, 1054, 1233
FauI CCCGC 4 cut(s) 142, 222, 323, 343
FokI GGATG 2 cut(s) 140, 577
FriOI GRGCYC 1 cut(s) 848
FspBI CTAG 3 cut(s) 759, 801, 873
GlaI GCGC 3 cut(s) 116, 176, 302
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 3 cut(s) 189, 314, 454
HapII CCGG 6 cut(s) 138, 190, 362, 486, 833, 918
HgaI GACGC 1 cut(s) 777
HhaI GCGC 3 cut(s) 117, 177, 303
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 8 cut(s) 273, 301, 556, 767, 827, 841, 1058, 1237
Hin6I GCGC 3 cut(s) 115, 175, 301
HinP1I GCGC 3 cut(s) 115, 175, 301
HincII GTYRAC 4 cut(s) 81, 529, 727, 883
HindII GTYRAC 4 cut(s) 81, 529, 727, 883
HinfI GANTC 5 cut(s) 884, 905, 937, 971, 1019
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 6 cut(s) 138, 190, 362, 486, 833, 918
HphI GGTGA 4 cut(s) 25, 681, 932, 946
Hpy166II GTNNAC 7 cut(s) 81, 331, 529, 672, 727, 883, 1183
Hpy188I TCNGA 7 cut(s) 17, 242, 499, 637, 889, 913, 984
Hpy188III TCNNGA 4 cut(s) 562, 1136, 1189, 1256
Hpy8I GTNNAC 7 cut(s) 81, 331, 529, 672, 727, 883, 1183
Hpy99I CGWCG 2 cut(s) 403, 469
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 8 cut(s) 234, 434, 459, 526, 533, 1156, 1161, 1199
HpyCH4IV ACGT 4 cut(s) 41, 441, 467, 1025
HpyCH4V TGCA 4 cut(s) 269, 714, 1202, 1276
HpyF3I CTNAG 3 cut(s) 393, 642, 1146
HpySE526I ACGT 4 cut(s) 41, 441, 467, 1025
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 8 cut(s) 273, 301, 556, 767, 827, 841, 1058, 1237
HspAI GCGC 3 cut(s) 115, 175, 301
KasI GGCGCC 1 cut(s) 174
KflI GGGWCCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 529
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 4 cut(s) 204, 1171, 1204, 1225
LguI GCTCTTC 2 cut(s) 688, 1035
Lsp1109I GCAGC 9 cut(s) 76, 184, 253, 526, 726, 1057, 1060, 1102, 1105
LweI GCATC 2 cut(s) 118, 1105
MaeI CTAG 3 cut(s) 759, 801, 873
MaeII ACGT 4 cut(s) 41, 441, 467, 1025
MaeIII GTNAC 1 cut(s) 1193
MalI GATC 4 cut(s) 206, 1173, 1206, 1227
MboI GATC 4 cut(s) 204, 1171, 1204, 1225
MhlI GDGCHC 1 cut(s) 848
MlsI TGGCCA 1 cut(s) 454
MluCI AATT 2 cut(s) 568, 694
MluNI TGGCCA 1 cut(s) 454
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 2 cut(s) 878, 914
MmeI TCCRAC 3 cut(s) 522, 999, 1008
Mox20I TGGCCA 1 cut(s) 454
MroNI GCCGGC 1 cut(s) 137
MscI TGGCCA 1 cut(s) 454
MseI TTAA 3 cut(s) 309, 405, 528
MslI CAYNNNNRTG 1 cut(s) 1057
Msp20I TGGCCA 1 cut(s) 454
MspA1I CMGCKG 2 cut(s) 89, 165
MspI CCGG 6 cut(s) 138, 190, 362, 486, 833, 918
MspR9I CCNGG 2 cut(s) 487, 919
Mva1269I GAATGC 3 cut(s) 11, 365, 1285
MvnI CGCG 4 cut(s) 165, 303, 426, 869
NaeI GCCGGC 1 cut(s) 139
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 2 cut(s) 487, 919
NdeII GATC 4 cut(s) 204, 1171, 1204, 1225
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 8 cut(s) 273, 301, 556, 767, 827, 841, 1058, 1237
NlaIV GGNNCC 7 cut(s) 176, 188, 212, 213, 244, 496, 511
NmeAIII GCCGAG 1 cut(s) 283
NspI RCATGY 4 cut(s) 273, 556, 1058, 1237
OliI CACNNNNGTG 1 cut(s) 1057
PciI ACATGT 1 cut(s) 1054
PciSI GCTCTTC 2 cut(s) 688, 1035
PcsI WCGNNNNNNNCGW 4 cut(s) 246, 255, 354, 438
PctI GAATGC 3 cut(s) 11, 365, 1285
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 937, 971, 1019
PleI GAGTC 2 cut(s) 878, 913
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 2 cut(s) 878, 913
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 1 cut(s) 1054
Psp124BI GAGCTC 1 cut(s) 848
Psp1406I AACGTT 1 cut(s) 1025
Psp5II RGGWCCY 1 cut(s) 211
PspN4I GGNNCC 7 cut(s) 176, 188, 212, 213, 244, 496, 511
PspPI GGNCC 3 cut(s) 187, 211, 313
PspPPI RGGWCCY 1 cut(s) 211
RsaI GTAC 7 cut(s) 194, 440, 535, 671, 751, 1158, 1247
RsaNI GTAC 7 cut(s) 193, 439, 534, 670, 750, 1157, 1246
RseI CAYNNNNRTG 1 cut(s) 1057
SacI GAGCTC 1 cut(s) 848
SacII CCGCGG 1 cut(s) 166
SapI GCTCTTC 2 cut(s) 688, 1035
SaqAI TTAA 3 cut(s) 309, 405, 528
Sau3AI GATC 4 cut(s) 204, 1171, 1204, 1225
Sau96I GGNCC 3 cut(s) 187, 211, 313
ScaI AGTACT 2 cut(s) 535, 1247
SchI GAGTC 2 cut(s) 878, 914
ScrFI CCNGG 2 cut(s) 487, 919
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 2 cut(s) 118, 1105
SfoI GGCGCC 1 cut(s) 176
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 1057
SmlI CTYRAG 2 cut(s) 122, 562
SmoI CTYRAG 2 cut(s) 122, 562
SpeI ACTAGT 3 cut(s) 758, 800, 872
Sse9I AATT 2 cut(s) 568, 694
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 3 cut(s) 759, 801, 873
SstI GAGCTC 1 cut(s) 848
StyD4I CCNGG 2 cut(s) 485, 917
StyI CCWWGG 2 cut(s) 222, 966
TaaI ACNGT 8 cut(s) 234, 434, 459, 526, 533, 1156, 1161, 1199
TaiI ACGT 4 cut(s) 44, 444, 470, 1028
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 568, 694
TatI WGTACW 3 cut(s) 533, 669, 1245
TauI GCSGC 7 cut(s) 89, 95, 168, 180, 290, 306, 429
TfiI GAWTC 3 cut(s) 937, 971, 1019
Tru1I TTAA 3 cut(s) 309, 405, 528
Tru9I TTAA 3 cut(s) 309, 405, 528
TscAI CASTG 3 cut(s) 650, 1185, 1204
TseI GCWGC 9 cut(s) 89, 197, 266, 539, 714, 1045, 1048, 1090, 1093
TspDTI ATGAA 3 cut(s) 562, 768, 806
TspGWI ACGGA 2 cut(s) 1054, 1143
TspRI CASTG 3 cut(s) 650, 1185, 1204
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 568
XceI RCATGY 4 cut(s) 273, 556, 1058, 1237
XspI CTAG 3 cut(s) 759, 801, 873
ZrmI AGTACT 2 cut(s) 535, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.