Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016831

Physical Location & Seq

Genomic Coordinates Reverse (-)

5864058 .. 5865317

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAAGAAGCGATCAGAAGGATGGACGAATTCACTCATTCTTCTGAACCCGACCCGATCACTAAAGAGCTAAGGAAGTCAACGACTGCCGCCACCAGTAAGCGCTCGCTGAGAGACACTGCGACAGCCGCTTCCTCGGGTGCAATGAGATACCGCGGCGTGCGACGCAGGCCGTGGGGTCGTTACGCGGCGGAGATCCGGGACCCGCTGTCCAAAGACCGGCGTTGGCTGGGGACCTTCGACACGGCAGAGGAAGCCGCCTGTGCCTACGACTGCGCCGCTCGTGCCATGCGCGGCGTCAAGGCTCGGACCAACTTCGTCTATCCTCCTTCCCCGCCTACCGATGTCGTCGCCGATCACCCCTTCCCTCCTTTCAGCTACCACATGCACTCTCACCCGTCTGCTAAAACTCGTAATGGTTACGGCGGCGCTAACTACTCTCCTAGTTGGAATTCTGTACCGTTTTTGCAATACCCATCTCCTAATCAGAACGACGGCTACGGCGGCGCTACTACTGCTGCTGCAACTTCTTCTTTCAACATGCTTTTCCTCCGGAATTTCATAAATCCCTCACAAAGCCCATCTCCCGTTTACAATAACCAGTTTCCGTACAAGATAAACGGCTCTTCTTCTACTTGTTGTTCTTCAGCTTCTTTGGTCAACCACCCCTCTTCTGGTCCACGCCATGAAGCCAACATCTCCGGAAGTACTAATTTCACTACTGGTTCTTCTTCTTCCATGGCTACTACTCCTACTTCTACTACTACAACTCTTCCCTTCATGGATATTACTTCACCTCCTCCCACAAAACCCACCTCCAACGACGATCAACACTACTCCTCCGACTTCTTCCCCACGGAGGCGTCCGATTCCGGGTTTCTAGAAGAGGTGATCGACCGCTTCTTCTCAAAACCCACCTCCAAGAAACTATCAAATGATGTTCCCAAATGGACTGACGACTACGCCCATCCTTCCAGTGCAGCTCAGACACCTAGCTTTGATGGGTCTTCGACAAGGTCCGTTGGAGGGTACTCAAAAGACGATCACCGTCAGGTAAATGTTTGTTACAGTTTCCAAGAGCTGCTGCCGCTGCCTCAGCCGCAGAAGCTGGAAGGATGTAGTTTCAACGAATTAATGGGTCATCATCATCAACAACAGCAAGTGTCACATCCACAGGCGGTACCGTTTTACAACGATCACGCGCCGTTGGGCGGCGGCTCATCTTCACCAAAAGATCGATCACTCCATGGGAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090708 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

420

Amino Acids

45.84

Weight (kDa)

7.27

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 99	4.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25630
malus_domestica	MD13G1101100.v1.1 MD16G1101400.v1.1
prunus_persica	Prupe.1G245500_v2.0.a1
pyrus_communis	pycom13g08820 pycom16g08590
rosa_chinensis	RchiOBHm_Chr4g0433071
rosa_laevigata	RLG00000006789
rosa_multiflora	Rmu_sc0001190.1_g000018
rosa_rugosa	Rorug04G0265000
rosa_samantha	Rh4BG327200 Rh4CG342600 Rh4DG322200
rosa_wichuraiana	Rw4G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1180
AccB1I	GGYRCC	1 cut(s)	1180
AccBSI	CCGCTC	1 cut(s)	281
AccII	CGCG	4 cut(s)	156, 188, 294, 1202
AccIII	TCCGGA	2 cut(s)	552, 701
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	29, 451, 556
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	297, 863
AfaI	GTAC	5 cut(s)	459, 611, 709, 1031, 1182
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	6 cut(s)	219, 674, 859, 873, 1026, 1211
AgsI	TTSAA	2 cut(s)	538, 1126
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	7 cut(s)	70, 378, 650, 983, 996, 1081, 1108
AluI	AGCT	7 cut(s)	70, 378, 650, 983, 996, 1081, 1108
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	1108
Ama87I	CYCGRG	1 cut(s)	136
Aor13HI	TCCGGA	2 cut(s)	552, 701
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	6 cut(s)	518, 521, 980, 1081, 1084, 1090
ApoI	RAATTY	3 cut(s)	29, 451, 556
AseI	ATTAAT	1 cut(s)	1133
Asp718I	GGTACC	1 cut(s)	1180
AspLEI	GCGC	6 cut(s)	105, 278, 294, 431, 509, 1204
AspS9I	GGNCC	5 cut(s)	202, 234, 309, 677, 1017
AsuC2I	CCSGG	2 cut(s)	200, 874
AsuHPI	GGTGA	6 cut(s)	350, 386, 786, 901, 1037, 1218
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	5 cut(s)	202, 234, 309, 677, 1017
BanI	GGYRCC	1 cut(s)	1180
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	999
BbvCI	CCTCAGC	1 cut(s)	1095
BbvI	GCAGC	6 cut(s)	505, 508, 992, 1068, 1071, 1077
BccI	CCATC	5 cut(s)	16, 484, 589, 975, 995
BceAI	ACGGC	7 cut(s)	157, 261, 439, 511, 517, 637, 1189
BcnI	CCSGG	2 cut(s)	200, 874
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	3 cut(s)	444, 881, 993
BfoI	RGCGCY	3 cut(s)	106, 432, 510
BmcAI	AGTACT	1 cut(s)	709
Bme1390I	CCNGG	2 cut(s)	200, 874
Bme18I	GGWCC	5 cut(s)	202, 234, 309, 677, 1017
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	5 cut(s)	202, 234, 309, 677, 1017
BmiI	GGNNCC	4 cut(s)	203, 204, 235, 1182
BmrFI	CCNGG	2 cut(s)	200, 874
BpiI	GAAGAC	1 cut(s)	999
Bpu10I	CCTNAGC	2 cut(s)	71, 1095
BpuMI	CCSGG	2 cut(s)	200, 874
Bsa29I	ATCGAT	1 cut(s)	1237
BsaHI	GRCGYC	2 cut(s)	297, 863
BsaJI	CCNNGG	6 cut(s)	135, 154, 173, 738, 855, 1246
BsaWI	WCCGGW	2 cut(s)	552, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	781, 811, 824, 854
Bsc4I	CCNNNNNNNGG	6 cut(s)	219, 674, 859, 873, 1026, 1211
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	4 cut(s)	96, 601, 727, 975
Bse3DI	GCAATG	1 cut(s)	150
BseAI	TCCGGA	2 cut(s)	552, 701
BseCI	ATCGAT	1 cut(s)	1237
BseDI	CCNNGG	6 cut(s)	135, 154, 173, 738, 855, 1246
BseGI	GGATG	4 cut(s)	27, 967, 1121, 1168
BseLI	CCNNNNNNNGG	6 cut(s)	219, 674, 859, 873, 1026, 1211
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	101, 998, 1109
BseNI	ACTGG	4 cut(s)	96, 601, 727, 975
BseRI	GAGGAG	2 cut(s)	789, 829
BseXI	GCAGC	6 cut(s)	505, 508, 992, 1068, 1071, 1077
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	999
Bsh1236I	CGCG	4 cut(s)	156, 188, 294, 1202
Bsh1285I	CGRYCG	1 cut(s)	898
BshFI	GGCC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	1180
BshVI	ATCGAT	1 cut(s)	1237
BsiEI	CGRYCG	1 cut(s)	898
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	5 cut(s)	199, 220, 553, 702, 873
BslFI	GGGAC	2 cut(s)	215, 247
BslI	CCNNNNNNNGG	6 cut(s)	219, 674, 859, 873, 1026, 1211
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	215, 247
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	136
Bsp13I	TCCGGA	2 cut(s)	552, 701
Bsp19I	CCATGG	2 cut(s)	738, 1246
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	3 cut(s)	102, 997, 1108
BspDI	ATCGAT	1 cut(s)	1237
BspEI	TCCGGA	2 cut(s)	552, 701
BspFNI	CGCG	4 cut(s)	156, 188, 294, 1202
BspLI	GGNNCC	4 cut(s)	203, 204, 235, 1182
BspPI	GGATC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	1180
BsrBI	CCGCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	4 cut(s)	96, 601, 727, 975
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	6 cut(s)	135, 154, 173, 738, 855, 1246
BssNI	GRCGYC	2 cut(s)	297, 863
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	738, 1246
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	462, 1049, 1070, 1185
Bst6I	CTCTTC	4 cut(s)	631, 676, 777, 879
BstACI	GRCGYC	2 cut(s)	297, 863
BstC8I	GCNNGC	3 cut(s)	107, 161, 170
BstDEI	CTNAG	4 cut(s)	71, 110, 984, 1095
BstDSI	CCRYGG	5 cut(s)	154, 173, 738, 855, 1246
BstF5I	GGATG	4 cut(s)	27, 967, 1121, 1168
BstFNI	CGCG	4 cut(s)	156, 188, 294, 1202
BstH2I	RGCGCY	3 cut(s)	106, 432, 510
BstHHI	GCGC	6 cut(s)	105, 278, 294, 431, 509, 1204
BstMAI	GTCTC	1 cut(s)	108
BstMCI	CGRYCG	1 cut(s)	898
BstNSI	RCATGY	2 cut(s)	388, 544
BstSCI	CCNGG	2 cut(s)	198, 872
BstUI	CGCG	4 cut(s)	156, 188, 294, 1202
BstV1I	GCAGC	6 cut(s)	505, 508, 992, 1068, 1071, 1077
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	1253
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	1237
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	1237
BtgI	CCRYGG	5 cut(s)	154, 173, 738, 855, 1246
BtsCI	GGATG	4 cut(s)	27, 967, 1121, 1168
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 982
Cac8I	GCNNGC	3 cut(s)	107, 161, 170
CaiI	CAGNNNCTG	1 cut(s)	1108
CfoI	GCGC	6 cut(s)	105, 278, 294, 431, 509, 1204
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	5 cut(s)	202, 234, 309, 677, 1017
Cfr42I	CCGCGG	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	1237
CseI	GACGC	3 cut(s)	174, 286, 852
Csp6I	GTAC	5 cut(s)	458, 610, 708, 1030, 1181
CviAII	CATG	7 cut(s)	289, 385, 541, 686, 739, 781, 1247
CviQI	GTAC	5 cut(s)	458, 610, 708, 1030, 1181
DdeI	CTNAG	4 cut(s)	71, 110, 984, 1095
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	4 cut(s)	631, 676, 777, 879
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	4 cut(s)	631, 676, 777, 879
EciI	GGCGGA	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	738, 1246
Eco47I	GGWCC	5 cut(s)	202, 234, 309, 677, 1017
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	202, 234
EcoRI	GAATTC	2 cut(s)	29, 451
EcoT14I	CCWWGG	2 cut(s)	738, 1246
ErhI	CCWWGG	2 cut(s)	738, 1246
FaeI	CATG	7 cut(s)	292, 388, 544, 689, 742, 784, 1250
FaiI	YATR	8 cut(s)	290, 386, 542, 563, 687, 740, 782, 1248
FaqI	GGGAC	2 cut(s)	215, 247
FatI	CATG	7 cut(s)	288, 384, 540, 685, 738, 780, 1246
FauI	CCCGC	2 cut(s)	213, 342
FokI	GGATG	4 cut(s)	34, 954, 1128, 1155
FspBI	CTAG	3 cut(s)	444, 881, 993
GlaI	GCGC	6 cut(s)	104, 277, 293, 430, 508, 1203
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	3 cut(s)	106, 432, 510
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	5 cut(s)	199, 220, 553, 702, 873
HgaI	GACGC	3 cut(s)	174, 286, 852
HhaI	GCGC	6 cut(s)	105, 278, 294, 431, 509, 1204
Hin1I	GRCGYC	2 cut(s)	297, 863
Hin1II	CATG	7 cut(s)	292, 388, 544, 689, 742, 784, 1250
Hin6I	GCGC	6 cut(s)	103, 276, 292, 429, 507, 1202
HinP1I	GCGC	6 cut(s)	103, 276, 292, 429, 507, 1202
HincII	GTYRAC	2 cut(s)	81, 661
HindII	GTYRAC	2 cut(s)	81, 661
HinfI	GANTC	1 cut(s)	869
HpaII	CCGG	5 cut(s)	199, 220, 553, 702, 873
HphI	GGTGA	6 cut(s)	350, 386, 786, 901, 1037, 1218
Hpy166II	GTNNAC	4 cut(s)	81, 592, 661, 680
Hpy188I	TCNGA	7 cut(s)	17, 46, 309, 489, 844, 868, 987
Hpy188III	TCNNGA	3 cut(s)	553, 702, 881
Hpy8I	GTNNAC	4 cut(s)	81, 592, 661, 680
Hpy99I	CGWCG	4 cut(s)	168, 353, 497, 827
HpyAV	CCTTC	7 cut(s)	12, 247, 339, 373, 787, 981, 1106
HpyCH4III	ACNGT	4 cut(s)	462, 1049, 1070, 1185
HpyCH4V	TGCA	5 cut(s)	143, 388, 469, 524, 980
HpyF3I	CTNAG	4 cut(s)	71, 110, 984, 1095
Hsp92I	GRCGYC	2 cut(s)	297, 863
Hsp92II	CATG	7 cut(s)	292, 388, 544, 689, 742, 784, 1250
HspAI	GCGC	6 cut(s)	103, 276, 292, 429, 507, 1202
KflI	GGGWCCC	1 cut(s)	202
Kpn2I	TCCGGA	2 cut(s)	552, 701
KpnI	GGTACC	1 cut(s)	1184
KspI	CCGCGG	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	631
Lsp1109I	GCAGC	6 cut(s)	505, 508, 992, 1068, 1071, 1077
MaeI	CTAG	3 cut(s)	444, 881, 993
MaeIII	GTNAC	4 cut(s)	182, 419, 1064, 1164
MbiI	CCGCTC	1 cut(s)	281
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	5 cut(s)	29, 451, 556, 712, 1130
MmeI	TCCRAC	4 cut(s)	428, 843, 867, 1003
MroI	TCCGGA	2 cut(s)	552, 701
MseI	TTAA	1 cut(s)	1133
MslI	CAYNNNNRTG	1 cut(s)	1251
MspA1I	CMGCKG	3 cut(s)	156, 208, 1090
MspI	CCGG	5 cut(s)	199, 220, 553, 702, 873
MspR9I	CCNGG	2 cut(s)	200, 874
MvnI	CGCG	4 cut(s)	156, 188, 294, 1202
NciI	CCSGG	2 cut(s)	200, 874
NcoI	CCATGG	2 cut(s)	738, 1246
NlaIII	CATG	7 cut(s)	292, 388, 544, 689, 742, 784, 1250
NlaIV	GGNNCC	4 cut(s)	203, 204, 235, 1182
NmuCI	GTSAC	1 cut(s)	1164
NspI	RCATGY	2 cut(s)	388, 544
PciSI	GCTCTTC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	869
PflFI	GACNNNGTC	1 cut(s)	1015
PfoI	TCCNGGA	1 cut(s)	198
PpuMI	RGGWCCY	2 cut(s)	202, 234
PshBI	ATTAAT	1 cut(s)	1133
Psp5II	RGGWCCY	2 cut(s)	202, 234
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	203, 204, 235, 1182
PspPI	GGNCC	5 cut(s)	202, 234, 309, 677, 1017
PspPPI	RGGWCCY	2 cut(s)	202, 234
PsrI	GAACNNNNNNTAC	2 cut(s)	482, 514
PstNI	CAGNNNCTG	1 cut(s)	1108
PsuI	RGATCY	1 cut(s)	195
PsyI	GACNNNGTC	1 cut(s)	1015
RsaI	GTAC	5 cut(s)	459, 611, 709, 1031, 1182
RsaNI	GTAC	5 cut(s)	458, 610, 708, 1030, 1181
RseI	CAYNNNNRTG	1 cut(s)	1251
SacII	CCGCGG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	1133
Sau96I	GGNCC	5 cut(s)	202, 234, 309, 677, 1017
ScaI	AGTACT	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	200, 874
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	5 cut(s)	202, 234, 309, 677, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	1251
Sse9I	AATT	5 cut(s)	29, 451, 556, 712, 1130
SspMI	CTAG	3 cut(s)	444, 881, 993
StyD4I	CCNGG	2 cut(s)	198, 872
StyI	CCWWGG	2 cut(s)	738, 1246
TaaI	ACNGT	4 cut(s)	462, 1049, 1070, 1185
TaqI	TCGA	4 cut(s)	240, 894, 1010, 1237
TasI	AATT	5 cut(s)	29, 451, 556, 712, 1130
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	1 cut(s)	1133
Tru9I	TTAA	1 cut(s)	1133
TscAI	CASTG	2 cut(s)	124, 982
TseFI	GTSAC	1 cut(s)	1164
TseI	GCWGC	6 cut(s)	518, 521, 980, 1081, 1084, 1090
Tsp45I	GTSAC	1 cut(s)	1164
TspDTI	ATGAA	3 cut(s)	550, 702, 769
TspGWI	ACGGA	3 cut(s)	597, 872, 1009
TspRI	CASTG	2 cut(s)	124, 982
Tth111I	GACNNNGTC	1 cut(s)	1015
VpaK11BI	GGWCC	5 cut(s)	202, 234, 309, 677, 1017
VspI	ATTAAT	1 cut(s)	1133
XapI	RAATTY	3 cut(s)	29, 451, 556
XbaI	TCTAGA	1 cut(s)	880
XceI	RCATGY	2 cut(s)	388, 544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XspI	CTAG	3 cut(s)	444, 881, 993
ZrmI	AGTACT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.