Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007900

Physical Location & Seq

Genomic Coordinates Forward (+)

8132441 .. 8137043

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1111800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1866 bp

ATGGAAGGCCAAATCAAAGAGGAGTTCAGCAGCAGCGGTTTCACTTTCGACGACGAAAAGGAAATCCTAAGAAAATGTGCTACATTCTGCATAAATTTGAGTCTTTCGCCTTCCGATCTCGTTACGAGCTGGGAAATTTACTACCTCAACAGGCAAATGAATGGAACGGTGGTACGCGATGTGGAAATGGATGGGTTTTTAGGGTATTTGCAAGAACAGAAGAAAGTAGCCATCGATGAACCAGAGCCCAATCTGCATATCTACTCAAGCAGAGATGTGGACATGATTCTGAATGATGAGTATGTAGATATAAAGGACGAGGTTCCTAGCACTCCACCAACCGAATCTCAGAACCATTACTCAGTGACGTCTGACTCAACACCACAAACAATTGGGAGCGTTCCTTCTTCTGGAAAACCATCAAGACTTGTAACTCCTTTTGGGCGACGAACAGACAAGTTTGTTGTGAAATTCAGCATCAATAATAAGCCAAATATAGAGAATGGGGAGAAGGAAGGTAATGAGAATCCTGGGGATGATGAATTCATCAGGAAGGTTAAACCTGGAAAGTGGTGTTCTTTAGTAATCCATGGTTCAGGACCTGAAACAGGTTGTAGGTTTATGTACGATAGAATTGAAGATAGGTTTAACGCACTTGAAAACCGAATTAGAAAGTATGCAACTGCATTAGTTTCATCTGGCCAGTATGAGGAACCGCTGGACCCTACAGTTTCGTCTCAGAAAATTATGTTTACTGCTGGCATGATCTGTTGTGACGGAGAGGGCCATTTGAACGACAAATCCACCTTGTTGCAGTGCAGTGCAGAGCATTCTGGAGGCCAACGTGTTCGTATGGAATTACAACATTTGAGCCAATTTTCAATCTTTCCAGGCCAGGTAGTAGGTTTTGAAGGGACCAATCCTAGTGGACACTGCTTCATTGCTTCAAAATTGATAGATTCAGTCCCTTTACCTGTTGCTGCTGATGGAAACTTGCCTCCTGCTAAAAAGCAAGCTTTGGATCAGGAGATTTTGCCAACTGATCAGTCCATTAAACAACCAGAGCTATCAGTGATCATCGCATCAGGTCCTTTTACCACAACAGACAACTTATTGTTTGAGCCTCTGAAAGAGCTTCTAGCATATGCAAGCAAAAAACTGCCTCAGTTGCTTATATTGCTAGGACCATTCATTGATTCTGAACATCCAGAAATTAAGAAAGGAACGGTCGACAGGAGCTTTGATGAAATATTCCAAACTGAGATTCTTAGAAAGTTGCAAGATCATGTTGAATACATGGGTTCGCATGCACGAGTTGTTCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTCCCTCAGCCTGCCTTTGATATTCATCCACCTGACCTTAAGCATCAGATAACCAGTCTCACAAATCCAGGGATTTTTGAGGCAGATGAGGTCAAGATAGGTTGCTGCTCTGTGGATGTTCTCAAACACCTTAGTGCAGAGGAGATGTCGCGCATTCCAAAGGGTGGAAAACCCAGTGACCGGTTGAGTAGACTTGCAAACCATATAATTAGCCAACGCAGCTTTTATCCTCTGTATCCACCAGCAGAAGACACTCCATTGGATTTTTCGCTTGCTCCCGAAGCTCTAAACATCTCATTGATCCCAGATATTCTCATCTTACCCTCTGACATGAAGTATTTTGTGAAGGTACTGAATCTAGGCGAAAGAGGTGAAGAGAAAGAGCAGGTTAAATGCATTTGTGTCAATCCGGGAAGACTTGCCAAGGGAGAAGGAGGAGGTACTTTCGTCGAGCTTGACTACTACGGTAATCCTGACACAACGAACGCTTCGATTATAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_E_B Pol_alpha_B_N

Protein Analysis

622

Amino Acids

69.06

Weight (kDa)

5.01

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_DPOA2	PF22062	218 - 320	2.8e-22	DNA polymerase alpha subunit B, OB domain
DNA_pol_E_B	PF04042	358 - 569	7.4e-49	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67630
fragaria_vesca	FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380
malus_domestica	MD13G1111800.v1.1 MD16G1111400.v1.1
prunus_persica	Prupe.1G233700_v2.0.a1 Prupe.1G233700_v2.0.a1
pyrus_communis	pycom13g09720 pycom16g09440
rosa_chinensis	RchiOBHm_Chr4g0431221
rosa_laevigata	RLG00000006918
rosa_multiflora	Rmu_sc0005258.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372760
rosa_rugosa	Rorug04G0249200 Rorug04G0249200
rosa_samantha	Rh4BG312700 Rh4CG329000 Rh4DG309300
rosa_wichuraiana	Rw4G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1856
AatII	GACGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	1735
AccB7I	CCANNNNNTGG	1 cut(s)	1523
AccI	GTMKAC	2 cut(s)	1230, 1549
AccII	CGCG	2 cut(s)	177, 1510
AciI	CCGC	2 cut(s)	36, 716
AclWI	GGATC	2 cut(s)	1029, 1654
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	4 cut(s)	94, 135, 470, 542
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	5 cut(s)	174, 626, 1326, 1710, 1801
AfiI	CCNNNNNNNGG	5 cut(s)	410, 608, 709, 1523, 1539
AflII	CTTAAG	1 cut(s)	1397
AflIII	ACRYGT	1 cut(s)	844
AgeI	ACCGGT	1 cut(s)	1539
AgsI	TTSAA	7 cut(s)	638, 659, 793, 882, 911, 948, 1292
AjnI	CCWGG	5 cut(s)	529, 562, 889, 894, 1426
AjuI	GAANNNNNNNTTGG	2 cut(s)	1248, 1280
AleI	CACNNNNGTG	1 cut(s)	1491
AloI	GAACNNNNNNTCC	2 cut(s)	785, 817
AluBI	AGCT	8 cut(s)	129, 1016, 1066, 1135, 1239, 1581, 1643, 1813
AluI	AGCT	8 cut(s)	129, 1016, 1066, 1135, 1239, 1581, 1643, 1813
Alw26I	GTCTC	2 cut(s)	741, 1421
AlwI	GGATC	2 cut(s)	1029, 1654
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	5 cut(s)	7, 700, 784, 838, 892
ApeKI	GCWGC	5 cut(s)	30, 33, 980, 1464, 1578
ApoI	RAATTY	4 cut(s)	94, 135, 470, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
AsiGI	ACCGGT	1 cut(s)	1539
AspLEI	GCGC	1 cut(s)	1512
AspS9I	GGNCC	6 cut(s)	599, 721, 784, 915, 1088, 1184
AsuC2I	CCSGG	1 cut(s)	1770
AsuHPI	GGTGA	1 cut(s)	1742
AvaII	GGWCC	5 cut(s)	599, 721, 915, 1088, 1184
BaeI	ACNNNNGTAYC	2 cut(s)	1791, 1824
BalI	TGGCCA	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	1311
BbsI	GAAGAC	2 cut(s)	1614, 1780
BbvCI	CCTCAGC	1 cut(s)	1365
BbvI	GCAGC	5 cut(s)	42, 45, 967, 1451, 1590
BccI	CCATC	5 cut(s)	185, 239, 427, 980, 1336
BciT130I	CCWGG	5 cut(s)	531, 564, 891, 896, 1428
BciVI	GTATCC	1 cut(s)	1605
BclI	TGATCA	2 cut(s)	1042, 1074
BcnI	CCSGG	1 cut(s)	1770
BcoDI	GTCTC	2 cut(s)	741, 1421
BfaI	CTAG	5 cut(s)	327, 924, 1139, 1181, 1718
BfmI	CTRYAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	1397
BfuAI	ACCTGC	1 cut(s)	1735
BfuI	GTATCC	1 cut(s)	1605
BisI	GCNGC	5 cut(s)	31, 34, 981, 1465, 1579
BlsI	GCNGC	5 cut(s)	32, 35, 982, 1466, 1580
Bme1390I	CCNGG	6 cut(s)	531, 564, 891, 896, 1428, 1770
Bme18I	GGWCC	5 cut(s)	599, 721, 915, 1088, 1184
BmgT120I	GGNCC	6 cut(s)	599, 721, 784, 915, 1088, 1184
BmiI	GGNNCC	4 cut(s)	324, 714, 723, 916
BmrFI	CCNGG	6 cut(s)	531, 564, 891, 896, 1428, 1770
BmrI	ACTGGG	1 cut(s)	1527
BmsI	GCATC	4 cut(s)	486, 1091, 1330, 1411
BmuI	ACTGGG	1 cut(s)	1527
BpiI	GAAGAC	2 cut(s)	1614, 1780
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	1 cut(s)	1365
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	1770
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	530, 589, 1427, 1782
BsaWI	WCCGGW	1 cut(s)	1539
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 608, 709, 1523, 1539
Bse118I	RCCGGY	1 cut(s)	1539
Bse1I	ACTGG	3 cut(s)	703, 1413, 1533
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	1383
BseBI	CCWGG	5 cut(s)	531, 564, 891, 896, 1428
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	530, 589, 1427, 1782
BseGI	GGATG	6 cut(s)	196, 541, 1204, 1345, 1384, 1480
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	5 cut(s)	410, 608, 709, 1523, 1539
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	6 cut(s)	362, 375, 752, 1178, 1251, 1379
BseNI	ACTGG	3 cut(s)	703, 1413, 1533
BseRI	GAGGAG	3 cut(s)	35, 1514, 1809
BseXI	GCAGC	5 cut(s)	42, 45, 967, 1451, 1590
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	3 cut(s)	838, 843, 1515
Bsh1236I	CGCG	2 cut(s)	177, 1510
Bsh1285I	CGRYCG	1 cut(s)	1230
BshFI	GGCC	5 cut(s)	9, 702, 786, 840, 894
BshTI	ACCGGT	1 cut(s)	1539
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	1230
BsiSI	CCGG	2 cut(s)	1540, 1769
BslFI	GGGAC	2 cut(s)	928, 950
BslI	CCNNNNNNNGG	5 cut(s)	410, 608, 709, 1523, 1539
BsmAI	GTCTC	2 cut(s)	741, 1421
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	928, 950
BsmI	GAATGC	2 cut(s)	829, 1512
BsnI	GGCC	5 cut(s)	9, 702, 786, 840, 894
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	2 cut(s)	36, 716
BspANI	GGCC	5 cut(s)	9, 702, 786, 840, 894
BspCNI	CTCAG	6 cut(s)	361, 374, 751, 1177, 1252, 1378
BspDI	ATCGAT	1 cut(s)	234
BspFNI	CGCG	2 cut(s)	177, 1510
BspLI	GGNNCC	4 cut(s)	324, 714, 723, 916
BspMI	ACCTGC	1 cut(s)	1735
BspPI	GGATC	2 cut(s)	1029, 1654
BspTI	CTTAAG	1 cut(s)	1397
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	1539
BsrI	ACTGG	3 cut(s)	703, 1413, 1533
BssAI	RCCGGY	1 cut(s)	1539
BssECI	CCNNGG	4 cut(s)	530, 589, 1427, 1782
BssMI	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	1311
BssT1I	CCWWGG	2 cut(s)	589, 1782
Bst2BI	CACGAG	1 cut(s)	1311
Bst2UI	CCWGG	5 cut(s)	531, 564, 891, 896, 1428
Bst4CI	ACNGT	4 cut(s)	169, 730, 1228, 1826
Bst6I	CTCTTC	1 cut(s)	1728
BstACI	GRCGYC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	1397
BstC8I	GCNNGC	6 cut(s)	760, 1014, 1150, 1308, 1371, 1632
BstDEI	CTNAG	9 cut(s)	68, 348, 361, 738, 1164, 1260, 1268, 1365, 1490
BstDSI	CCRYGG	1 cut(s)	589
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	6 cut(s)	196, 541, 1204, 1345, 1384, 1480
BstFNI	CGCG	2 cut(s)	177, 1510
BstHHI	GCGC	1 cut(s)	1512
BstKTI	GATC	7 cut(s)	118, 768, 1024, 1045, 1077, 1285, 1662
BstMAI	GTCTC	2 cut(s)	741, 1421
BstMBI	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
BstMCI	CGRYCG	1 cut(s)	1230
BstMWI	GCNNNNNNNGC	5 cut(s)	253, 1168, 1177, 1578, 1640
BstNI	CCWGG	5 cut(s)	531, 564, 891, 896, 1428
BstNSI	RCATGY	1 cut(s)	1310
BstSCI	CCNGG	6 cut(s)	529, 562, 889, 894, 1426, 1768
BstSFI	CTRYAG	1 cut(s)	726
BstUI	CGCG	2 cut(s)	177, 1510
BstV1I	GCAGC	5 cut(s)	42, 45, 967, 1451, 1590
BstV2I	GAAGAC	2 cut(s)	1614, 1780
Bsu15I	ATCGAT	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	1605
BsuRI	GGCC	5 cut(s)	9, 702, 786, 840, 894
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	589
BtgZI	GCGATG	2 cut(s)	192, 1063
BtsCI	GGATG	6 cut(s)	196, 541, 1204, 1345, 1384, 1480
BtsI	GCAGTG	3 cut(s)	821, 826, 931
BtsIMutI	CAGTG	6 cut(s)	369, 821, 826, 931, 1077, 1540
BveI	ACCTGC	1 cut(s)	1735
Cac8I	GCNNGC	6 cut(s)	760, 1014, 1150, 1308, 1371, 1632
CaiI	CAGNNNCTG	1 cut(s)	602
CfoI	GCGC	1 cut(s)	1512
Cfr10I	RCCGGY	1 cut(s)	1539
Cfr13I	GGNCC	6 cut(s)	599, 721, 784, 915, 1088, 1184
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	5 cut(s)	173, 625, 1325, 1709, 1800
CspAI	ACCGGT	1 cut(s)	1539
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	8 cut(s)	283, 590, 763, 1286, 1297, 1307, 1349, 1690
CviQI	GTAC	5 cut(s)	173, 625, 1325, 1709, 1800
DdeI	CTNAG	9 cut(s)	68, 348, 361, 738, 1164, 1260, 1268, 1365, 1490
DpnI	GATC	7 cut(s)	117, 767, 1023, 1044, 1076, 1284, 1661
DpnII	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	1728
EarI	CTCTTC	1 cut(s)	1728
Eco130I	CCWWGG	2 cut(s)	589, 1782
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	5 cut(s)	599, 721, 915, 1088, 1184
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoO109I	RGGNCCY	2 cut(s)	599, 1088
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	5 cut(s)	529, 562, 889, 894, 1426
EcoT14I	CCWWGG	2 cut(s)	589, 1782
EcoT22I	ATGCAT	1 cut(s)	1757
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	589, 1782
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	8 cut(s)	286, 593, 766, 1289, 1300, 1310, 1352, 1693
FaqI	GGGAC	2 cut(s)	928, 950
FatI	CATG	8 cut(s)	282, 589, 762, 1285, 1296, 1306, 1348, 1689
FauNDI	CATATG	1 cut(s)	1144
FbaI	TGATCA	2 cut(s)	1042, 1074
FblI	GTMKAC	2 cut(s)	1230, 1549
Fnu4HI	GCNGC	5 cut(s)	31, 34, 981, 1465, 1579
FokI	GGATG	6 cut(s)	203, 548, 1191, 1352, 1371, 1487
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	31, 34, 981, 1465, 1579
FspBI	CTAG	5 cut(s)	327, 924, 1139, 1181, 1718
GlaI	GCGC	1 cut(s)	1511
GluI	GCNGC	5 cut(s)	31, 34, 981, 1465, 1579
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	5 cut(s)	9, 702, 786, 840, 894
HapII	CCGG	2 cut(s)	1540, 1769
HhaI	GCGC	1 cut(s)	1512
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	8 cut(s)	286, 593, 766, 1289, 1300, 1310, 1352, 1693
Hin6I	GCGC	1 cut(s)	1510
HinP1I	GCGC	1 cut(s)	1510
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	9 cut(s)	100, 286, 344, 374, 526, 959, 1196, 1264, 1714
HpaII	CCGG	2 cut(s)	1540, 1769
HphI	GGTGA	1 cut(s)	1742
Hpy166II	GTNNAC	5 cut(s)	280, 753, 929, 1231, 1550
Hpy188I	TCNGA	9 cut(s)	115, 291, 351, 373, 741, 1128, 1201, 1407, 1687
Hpy8I	GTNNAC	5 cut(s)	280, 753, 929, 1231, 1550
Hpy99I	CGWCG	4 cut(s)	53, 56, 450, 1811
HpyAV	CCTTC	8 cut(s)	120, 414, 505, 509, 547, 905, 1699, 1784
HpyCH4III	ACNGT	4 cut(s)	169, 730, 1228, 1826
HpyCH4IV	ACGT	2 cut(s)	368, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	253, 1168, 1177, 1578, 1640
HpyF3I	CTNAG	9 cut(s)	68, 348, 361, 738, 1164, 1260, 1268, 1365, 1490
HpySE526I	ACGT	2 cut(s)	368, 844
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	8 cut(s)	286, 593, 766, 1289, 1300, 1310, 1352, 1693
HspAI	GCGC	1 cut(s)	1510
Ksp22I	TGATCA	2 cut(s)	1042, 1074
Kzo9I	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
LmnI	GCTCC	3 cut(s)	396, 1236, 1639
Lsp1109I	GCAGC	5 cut(s)	42, 45, 967, 1451, 1590
LweI	GCATC	4 cut(s)	486, 1091, 1330, 1411
MaeI	CTAG	5 cut(s)	327, 924, 1139, 1181, 1718
MaeII	ACGT	2 cut(s)	368, 844
MaeIII	GTNAC	5 cut(s)	121, 364, 430, 773, 1535
MalI	GATC	7 cut(s)	117, 767, 1023, 1044, 1076, 1284, 1661
MboI	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
MboII	GAAGA	6 cut(s)	232, 399, 650, 1619, 1745, 1785
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	702
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	109, 368
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	1757
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	6 cut(s)	558, 648, 1053, 1215, 1398, 1749
MslI	CAYNNNNRTG	1 cut(s)	1491
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	2 cut(s)	36, 718
MspCI	CTTAAG	1 cut(s)	1397
MspI	CCGG	2 cut(s)	1540, 1769
MspR9I	CCNGG	6 cut(s)	531, 564, 891, 896, 1428, 1770
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	829, 1512
MvaI	CCWGG	5 cut(s)	531, 564, 891, 896, 1428
MvnI	CGCG	2 cut(s)	177, 1510
MwoI	GCNNNNNNNGC	5 cut(s)	253, 1168, 1177, 1578, 1640
NciI	CCSGG	1 cut(s)	1770
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
NlaIII	CATG	8 cut(s)	286, 593, 766, 1289, 1300, 1310, 1352, 1693
NlaIV	GGNNCC	4 cut(s)	324, 714, 723, 916
NmuCI	GTSAC	3 cut(s)	364, 773, 1535
NsiI	ATGCAT	1 cut(s)	1757
NspI	RCATGY	1 cut(s)	1310
OliI	CACNNNNGTG	1 cut(s)	1491
PaeI	GCATGC	1 cut(s)	1310
PcsI	WCGNNNNNNNCGW	1 cut(s)	1847
PctI	GAATGC	2 cut(s)	829, 1512
PfeI	GAWTC	7 cut(s)	286, 344, 526, 959, 1196, 1264, 1714
PflMI	CCANNNNNTGG	1 cut(s)	1523
PfoI	TCCNGGA	1 cut(s)	1768
PinAI	ACCGGT	1 cut(s)	1539
PkrI	GCNGC	5 cut(s)	32, 35, 982, 1466, 1580
PleI	GAGTC	2 cut(s)	108, 368
PpsI	GAGTC	2 cut(s)	108, 368
PpuMI	RGGWCCY	2 cut(s)	599, 1088
PsiI	TTATAA	1 cut(s)	1856
Psp5II	RGGWCCY	2 cut(s)	599, 1088
Psp6I	CCWGG	5 cut(s)	529, 562, 889, 894, 1426
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	5 cut(s)	529, 562, 889, 894, 1426
PspN4I	GGNNCC	4 cut(s)	324, 714, 723, 916
PspPI	GGNCC	6 cut(s)	599, 721, 784, 915, 1088, 1184
PspPPI	RGGWCCY	2 cut(s)	599, 1088
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	5 cut(s)	174, 626, 1326, 1710, 1801
RsaNI	GTAC	5 cut(s)	173, 625, 1325, 1709, 1800
RseI	CAYNNNNRTG	1 cut(s)	1491
SalI	GTCGAC	1 cut(s)	1229
SaqAI	TTAA	6 cut(s)	558, 648, 1053, 1215, 1398, 1749
SatI	GCNGC	5 cut(s)	31, 34, 981, 1465, 1579
Sau3AI	GATC	7 cut(s)	115, 765, 1021, 1042, 1074, 1282, 1659
Sau96I	GGNCC	6 cut(s)	599, 721, 784, 915, 1088, 1184
SchI	GAGTC	2 cut(s)	109, 368
ScrFI	CCNGG	6 cut(s)	531, 564, 891, 896, 1428, 1770
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	4 cut(s)	486, 1091, 1330, 1411
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	5 cut(s)	599, 721, 915, 1088, 1184
SmiMI	CAYNNNNRTG	1 cut(s)	1491
SmlI	CTYRAG	2 cut(s)	265, 1397
SmoI	CTYRAG	2 cut(s)	265, 1397
SphI	GCATGC	1 cut(s)	1310
SsiI	CCGC	2 cut(s)	36, 716
SspI	AATATT	1 cut(s)	1251
SspMI	CTAG	5 cut(s)	327, 924, 1139, 1181, 1718
StyD4I	CCNGG	6 cut(s)	529, 562, 889, 894, 1426, 1768
StyI	CCWWGG	2 cut(s)	589, 1782
TaaI	ACNGT	4 cut(s)	169, 730, 1228, 1826
TaiI	ACGT	2 cut(s)	371, 847
TaqI	TCGA	5 cut(s)	48, 234, 1230, 1809, 1850
TfiI	GAWTC	7 cut(s)	286, 344, 526, 959, 1196, 1264, 1714
Tru1I	TTAA	6 cut(s)	558, 648, 1053, 1215, 1398, 1749
Tru9I	TTAA	6 cut(s)	558, 648, 1053, 1215, 1398, 1749
TscAI	CASTG	6 cut(s)	369, 821, 826, 938, 1077, 1540
TseFI	GTSAC	3 cut(s)	364, 773, 1535
TseI	GCWGC	5 cut(s)	30, 33, 980, 1464, 1578
Tsp45I	GTSAC	3 cut(s)	364, 773, 1535
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	6 cut(s)	369, 821, 826, 938, 1077, 1540
Van91I	CCANNNNNTGG	1 cut(s)	1523
Vha464I	CTTAAG	1 cut(s)	1397
VpaK11BI	GGWCC	5 cut(s)	599, 721, 915, 1088, 1184
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	4 cut(s)	94, 135, 470, 542
XceI	RCATGY	1 cut(s)	1310
XmiI	GTMKAC	2 cut(s)	1230, 1549
XspI	CTAG	5 cut(s)	327, 924, 1139, 1181, 1718
ZraI	GACGTC	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	1757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.