Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007900

Physical Location & Seq

Genomic Coordinates Forward (+)

11867511 .. 11872365

Gene Structure 4855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGGAAGACCAAATCAAAGCGGAATTCATCAAGAGCGACTTCACTCTCGACGAAGAAGACGAAATTCTCAAAAAATGTCTCACTTTCTGCATCAATTACAAGCTCACGCCTTCGGATCTCGTTTCAAGCTGGGAAATTTACTACCTCAACAGGCAGTTAAACGAACCGGTGGTTCGCGATGTTGAAATGGAAGGGTTTTTACAGCATTTGCAGAATGAGCAGAAAGAAGCTCTGAATAATAAGGAGGAACCCGGTCTGCATATCTACTCGAGTAATGATGTGGACATGATTTTGAATGGTGAAGATGTAGATATAGAGGAAACGGTTCTTCACACTCCAGTATCCAAATCCCAGAACCACTATTCAGATTCACTCTACTCAACACCACAAACAAATGGGAACATTCCTTCTTCTGGAAAACCAACAAAGCTTATAACCCCCTTTGGTAGACGAACTGAAAAGTTTGTTGTGAAATTTAGTATTGATAATATGCCAAATACAGATAATGTGAAGAAGGAAGATGATAATGAGGATCAAGACGAAGATGACATTATCAGGAGGGTTAAGCCTGGGAAGAGGTGTTCTTTAGTAGTCCATGGTTCAGGTCCTGAAATAGGCTGTAGGTTCATGTATGATAGGATTGCAGACAGGTTTAATGCACTCGAAACCCGAATCTTAAAGCATGCAACTGCACTGGTTTCATCCGGGCAGTATGAGGAACCGGTGGACCCTACAATTTCTTCTGAGAAAAGCATATTTACGGTTGGGATGATCTGTTGTGATGGAGATGGCCATTTGAACGAGAAGTCCACCTTGCTGCAAAGCAGTGCTGAACATTCTGGAGGCCAACGTGTTCGAATAGAGTTACACCATGTGAGCCAGTATTCAATCTTTCCAGGCCAGGTAGTAGGTATTGTGGGGCACAATCCTAGTGGACATTGCTTCATTGCTTCTAAACTGATTGATTCAATCCCTTTATCTGTTGCTGCTGATGAAAACTTGCATCCTGCAAAAAAGCCAGCTTTGGATCCGGAGAGTTTGTCAATCGATCTGGCCAGTCCACAACCAGAGCTATCAGTGATCATTGCATCAGGTCCTTTTACCACGATTGACAATTTACTGTTTGAACCTCTAAAAGAGCTGCTAGCATATGCAAACAGAAAGCTTCCTCAATTGCTTATATTGCTAGGACCATTTATTGATTCTGAACATCCAGAAATTAAGAAAGGCACTGTTGACAGGACCTTTGATGACATATTCCAATTTGAAATTATAAGAAGGTTGCAAGATTATGCAGAATACATGGGCTCCCATGCACGTGTCGTTCTTGTACCATCTGTACGTGATGCTAACCATGACTTTGTTTTCCCTCAGCCTCCCTTTGATATTCGTCCTCCAGATCTCAAACGTCAGATCACAAGTATCACAAATCCAGGAATGTTTGAGGCAAATCAGGTCAAGATAGGTTGCTGCTCTGTCGATATTCTTAAACACCTTAGTGGAGAGGAGACCTCACGTATTCCAAAGGATGGAACACCCAGTGATCGCATGAGTAGACTTGCAAACCATATACTCGGCCAACGCAGCTTTTATCCTTTATATCCACCAGCAGAAAGTGTTCCATTGGATTTTTCACTTTCTCCAGAAGCTCTAAACATCTCATTGATCCCAGACATTCTCATCCTACCCTCTGACATGAAGTATTTTGTAAAGGTGCTGTCCCTCAGTGAAAGAAGTGAAGGAGAACAGCCGGTTAAATGCATCTGTGTCAATCCGGGAAGACTTGCAAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTAACTACTATGGTAGTCCTGACACATCCAATGCTTCCATTATAGGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_E_B Pol_alpha_B_N

Protein Analysis

624

Amino Acids

69.51

Weight (kDa)

5.01

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_alpha_B_N	PF08418	4 - 50	5.3e-06	DNA polymerase alpha subunit B N-terminal
OB_DPOA2	PF22062	229 - 322	1.9e-22	DNA polymerase alpha subunit B, OB domain
DNA_pol_E_B	PF04042	360 - 571	1.1e-48	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67630
fragaria_vesca	FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380
malus_domestica	MD13G1111800.v1.1 MD16G1111400.v1.1
prunus_persica	Prupe.1G233700_v2.0.a1 Prupe.1G233700_v2.0.a1
pyrus_communis	pycom13g09720 pycom16g09440
rosa_chinensis	RchiOBHm_Chr4g0431221
rosa_laevigata	RLG00000006918
rosa_multiflora	Rmu_sc0005258.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372760
rosa_rugosa	Rorug04G0249200 Rorug04G0249200
rosa_samantha	Rh4BG312700 Rh4CG329000 Rh4DG309300
rosa_wichuraiana	Rw4G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	434, 1274
AccB7I	CCANNNNNTGG	1 cut(s)	1529
AccI	GTMKAC	2 cut(s)	448, 1555
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	1030
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	5 cut(s)	123, 540, 1022, 1035, 1660
AcoI	YGGCCR	3 cut(s)	790, 1053, 1576
AcsI	RAATTY	4 cut(s)	23, 63, 135, 473
AcvI	CACGTG	1 cut(s)	1319
AdeI	CACNNNGTG	2 cut(s)	874, 1541
AfaI	GTAC	3 cut(s)	1332, 1341, 1807
AfiI	CCNNNNNNNGG	3 cut(s)	413, 614, 1529
AflIII	ACRYGT	2 cut(s)	850, 1318
AgeI	ACCGGT	2 cut(s)	166, 721
AgsI	TTSAA	8 cut(s)	126, 185, 295, 799, 888, 969, 1127, 1268
AjnI	CCWGG	4 cut(s)	568, 895, 900, 1432
AleI	CACNNNNGTG	1 cut(s)	1497
AloI	GAACNNNNNNTCC	4 cut(s)	565, 597, 791, 823
Alw26I	GTCTC	2 cut(s)	83, 1502
AlwI	GGATC	5 cut(s)	123, 540, 1022, 1035, 1660
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	1030
AoxI	GGCC	5 cut(s)	790, 844, 898, 1053, 1576
ApeKI	GCWGC	5 cut(s)	817, 986, 1141, 1470, 1584
ApoI	RAATTY	4 cut(s)	23, 63, 135, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	1229, 1261
AsiGI	ACCGGT	2 cut(s)	166, 721
Asp700I	GAANNNNTTC	2 cut(s)	324, 1617
AspS9I	GGNCC	5 cut(s)	605, 727, 1094, 1190, 1242
AsuC2I	CCSGG	3 cut(s)	252, 706, 1776
AsuHPI	GGTGA	1 cut(s)	311
AsuII	TTCGAA	1 cut(s)	856
AsuNHI	GCTAGC	1 cut(s)	1144
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	5 cut(s)	605, 727, 1094, 1190, 1242
BaeGI	GKGCMC	1 cut(s)	924
BaeI	ACNNNNGTAYC	4 cut(s)	324, 357, 1797, 1830
BalI	TGGCCA	2 cut(s)	792, 1055
BamHI	GGATCC	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	1310
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbrPI	CACGTG	1 cut(s)	1319
BbsI	GAAGAC	3 cut(s)	12, 63, 1786
BbvCI	CCTCAGC	1 cut(s)	1371
BbvI	GCAGC	5 cut(s)	804, 973, 1128, 1457, 1596
BccI	CCATC	4 cut(s)	776, 782, 1342, 1523
BciT130I	CCWGG	4 cut(s)	570, 897, 902, 1434
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	1080
BcnI	CCSGG	3 cut(s)	252, 706, 1776
BcoDI	GTCTC	2 cut(s)	83, 1502
BfaI	CTAG	3 cut(s)	930, 1145, 1187
BfmI	CTRYAG	1 cut(s)	619
BfuI	GTATCC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	1399
BisI	GCNGC	5 cut(s)	818, 987, 1142, 1471, 1585
BlsI	GCNGC	5 cut(s)	819, 988, 1143, 1472, 1586
Bme1390I	CCNGG	7 cut(s)	252, 570, 706, 897, 902, 1434, 1776
Bme18I	GGWCC	5 cut(s)	605, 727, 1094, 1190, 1242
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	605, 727, 1094, 1190, 1242
BmiI	GGNNCC	5 cut(s)	249, 720, 729, 1029, 1309
BmrFI	CCNGG	7 cut(s)	252, 570, 706, 897, 902, 1434, 1776
BmrI	ACTGGG	1 cut(s)	1533
BmsI	GCATC	5 cut(s)	99, 1012, 1097, 1336, 1770
BmtI	GCTAGC	1 cut(s)	1148
BmuI	ACTGGG	1 cut(s)	1533
BpiI	GAAGAC	3 cut(s)	12, 63, 1786
BplI	GAGNNNNNCTC	2 cut(s)	1496, 1528
BpmI	CTGGAG	4 cut(s)	321, 861, 1380, 1626
Bpu10I	CCTNAGC	1 cut(s)	1371
Bpu14I	TTCGAA	1 cut(s)	856
BpuMI	CCSGG	3 cut(s)	252, 706, 1776
Bsa29I	ATCGAT	1 cut(s)	1047
BsaAI	YACGTR	3 cut(s)	1319, 1343, 1517
BsaI	GGTCTC	1 cut(s)	1502
BsaJI	CCNNGG	2 cut(s)	569, 595
BsaWI	WCCGGW	3 cut(s)	166, 721, 1030
BsaXI	ACNNNNNCTCC	4 cut(s)	1025, 1055, 1292, 1322
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 614, 1529
Bse118I	RCCGGY	3 cut(s)	166, 721, 1750
Bse1I	ACTGG	5 cut(s)	338, 699, 880, 1056, 1539
Bse3DI	GCAATG	3 cut(s)	937, 945, 1083
BseAI	TCCGGA	1 cut(s)	1030
BseBI	CCWGG	4 cut(s)	570, 897, 902, 1434
BseCI	ATCGAT	1 cut(s)	1047
BseDI	CCNNGG	2 cut(s)	569, 595
BseGI	GGATG	7 cut(s)	701, 774, 1003, 1210, 1534, 1680, 1844
BseLI	CCNNNNNNNGG	3 cut(s)	413, 614, 1529
BseMI	GCAATG	3 cut(s)	937, 945, 1083
BseMII	CTCAG	3 cut(s)	735, 1385, 1738
BseNI	ACTGG	5 cut(s)	338, 699, 880, 1056, 1539
BseRI	GAGGAG	1 cut(s)	1520
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	5 cut(s)	804, 973, 1128, 1457, 1596
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	792, 846, 900, 1055, 1578
BshTI	ACCGGT	2 cut(s)	166, 721
BshVI	ATCGAT	1 cut(s)	1047
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	7 cut(s)	167, 252, 705, 722, 1031, 1751, 1775
BslFI	GGGAC	1 cut(s)	1705
BslI	CCNNNNNNNGG	3 cut(s)	413, 614, 1529
BsmAI	GTCTC	2 cut(s)	83, 1502
BsmFI	GGGAC	1 cut(s)	1705
BsnI	GGCC	5 cut(s)	792, 846, 900, 1055, 1578
Bso31I	GGTCTC	1 cut(s)	1502
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	856
Bsp1286I	GDGCHC	2 cut(s)	924, 1310
Bsp13I	TCCGGA	1 cut(s)	1030
Bsp19I	CCATGG	1 cut(s)	595
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	5 cut(s)	792, 846, 900, 1055, 1578
BspCNI	CTCAG	3 cut(s)	736, 1384, 1737
BspDI	ATCGAT	1 cut(s)	1047
BspEI	TCCGGA	1 cut(s)	1030
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	5 cut(s)	249, 720, 729, 1029, 1309
BspOI	GCTAGC	1 cut(s)	1148
BspPI	GGATC	5 cut(s)	123, 540, 1022, 1035, 1660
BspT104I	TTCGAA	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	1502
BsrDI	GCAATG	3 cut(s)	937, 945, 1083
BsrFI	RCCGGY	3 cut(s)	166, 721, 1750
BsrI	ACTGG	5 cut(s)	338, 699, 880, 1056, 1539
BssAI	RCCGGY	3 cut(s)	166, 721, 1750
BssECI	CCNNGG	2 cut(s)	569, 595
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	4 cut(s)	570, 897, 902, 1434
Bst4CI	ACNGT	4 cut(s)	325, 763, 1122, 1234
Bst6I	CTCTTC	1 cut(s)	569
BstBAI	YACGTR	3 cut(s)	1319, 1343, 1517
BstBI	TTCGAA	1 cut(s)	856
BstC8I	GCNNGC	3 cut(s)	684, 1020, 1146
BstDEI	CTNAG	4 cut(s)	744, 1371, 1496, 1724
BstDSI	CCRYGG	1 cut(s)	595
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	7 cut(s)	701, 774, 1003, 1210, 1534, 1680, 1844
BstFNI	CGCG	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	83, 1502
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 1183, 1584
BstNI	CCWGG	4 cut(s)	570, 897, 902, 1434
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	7 cut(s)	250, 568, 704, 895, 900, 1432, 1774
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	804, 973, 1128, 1457, 1596
BstV2I	GAAGAC	3 cut(s)	12, 63, 1786
BstX2I	RGATCY	3 cut(s)	115, 1027, 1399
BstYI	RGATCY	3 cut(s)	115, 1027, 1399
Bsu15I	ATCGAT	1 cut(s)	1047
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	792, 846, 900, 1055, 1578
BsuTUI	ATCGAT	1 cut(s)	1047
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	7 cut(s)	701, 774, 1003, 1210, 1534, 1680, 1844
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	6 cut(s)	692, 832, 1083, 1230, 1546, 1732
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	684, 1020, 1146
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr10I	RCCGGY	3 cut(s)	166, 721, 1750
Cfr13I	GGNCC	5 cut(s)	605, 727, 1094, 1190, 1242
ClaI	ATCGAT	1 cut(s)	1047
Csp6I	GTAC	3 cut(s)	1331, 1340, 1806
CspAI	ACCGGT	2 cut(s)	166, 721
CspCI	CAANNNNNGTGG	2 cut(s)	913, 948
CviQI	GTAC	3 cut(s)	1331, 1340, 1806
DdeI	CTNAG	4 cut(s)	744, 1371, 1496, 1724
DraIII	CACNNNGTG	2 cut(s)	874, 1541
EaeI	YGGCCR	3 cut(s)	790, 1053, 1576
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	1310
Eco31I	GGTCTC	1 cut(s)	1502
Eco47I	GGWCC	5 cut(s)	605, 727, 1094, 1190, 1242
Eco72I	CACGTG	1 cut(s)	1319
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	3 cut(s)	605, 1094, 1242
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	4 cut(s)	568, 895, 900, 1432
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	1763
EcoT38I	GRGCYC	1 cut(s)	1310
ErhI	CCWWGG	1 cut(s)	595
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 797, 829
FaqI	GGGAC	1 cut(s)	1705
FauNDI	CATATG	1 cut(s)	1150
FbaI	TGATCA	1 cut(s)	1080
FblI	GTMKAC	2 cut(s)	448, 1555
Fnu4HI	GCNGC	5 cut(s)	818, 987, 1142, 1471, 1585
FokI	GGATG	7 cut(s)	688, 781, 990, 1197, 1541, 1667, 1831
FriOI	GRGCYC	1 cut(s)	1310
Fsp4HI	GCNGC	5 cut(s)	818, 987, 1142, 1471, 1585
FspBI	CTAG	3 cut(s)	930, 1145, 1187
GluI	GCNGC	5 cut(s)	818, 987, 1142, 1471, 1585
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	4 cut(s)	321, 861, 1380, 1626
HaeIII	GGCC	5 cut(s)	792, 846, 900, 1055, 1578
HapII	CCGG	7 cut(s)	167, 252, 705, 722, 1031, 1751, 1775
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HindIII	AAGCTT	2 cut(s)	428, 1163
HinfI	GANTC	4 cut(s)	368, 672, 965, 1202
HpaII	CCGG	7 cut(s)	167, 252, 705, 722, 1031, 1751, 1775
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	8 cut(s)	283, 449, 727, 810, 935, 1061, 1237, 1556
Hpy188I	TCNGA	7 cut(s)	115, 234, 367, 745, 1207, 1413, 1693
Hpy8I	GTNNAC	8 cut(s)	283, 449, 727, 810, 935, 1061, 1237, 1556
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	7 cut(s)	120, 185, 417, 508, 1272, 1733, 1790
HpyCH4III	ACNGT	4 cut(s)	325, 763, 1122, 1234
HpyCH4IV	ACGT	5 cut(s)	850, 1318, 1342, 1408, 1516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 1183, 1584
HpyF3I	CTNAG	4 cut(s)	744, 1371, 1496, 1724
HpySE526I	ACGT	5 cut(s)	850, 1318, 1342, 1408, 1516
Kpn2I	TCCGGA	1 cut(s)	1030
Ksp22I	TGATCA	1 cut(s)	1080
LmnI	GCTCC	1 cut(s)	1313
Lsp1109I	GCAGC	5 cut(s)	804, 973, 1128, 1457, 1596
LweI	GCATC	5 cut(s)	99, 1012, 1097, 1336, 1770
MaeI	CTAG	3 cut(s)	930, 1145, 1187
MaeII	ACGT	5 cut(s)	850, 1318, 1342, 1408, 1516
MaeIII	GTNAC	1 cut(s)	864
MfeI	CAATTG	1 cut(s)	1172
MflI	RGATCY	3 cut(s)	115, 1027, 1399
MhlI	GDGCHC	2 cut(s)	924, 1310
MlsI	TGGCCA	2 cut(s)	792, 1055
MluNI	TGGCCA	2 cut(s)	792, 1055
Mox20I	TGGCCA	2 cut(s)	792, 1055
Mph1103I	ATGCAT	1 cut(s)	1763
MroI	TCCGGA	1 cut(s)	1030
MroXI	GAANNNNTTC	2 cut(s)	324, 1617
MscI	TGGCCA	2 cut(s)	792, 1055
MseI	TTAA	8 cut(s)	158, 564, 654, 677, 1221, 1488, 1755, 1821
MslI	CAYNNNNRTG	2 cut(s)	1317, 1497
Msp20I	TGGCCA	2 cut(s)	792, 1055
MspI	CCGG	7 cut(s)	167, 252, 705, 722, 1031, 1751, 1775
MspR9I	CCNGG	7 cut(s)	252, 570, 706, 897, 902, 1434, 1776
MunI	CAATTG	1 cut(s)	1172
MvaI	CCWGG	4 cut(s)	570, 897, 902, 1434
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	217, 1183, 1584
NciI	CCSGG	3 cut(s)	252, 706, 1776
NcoI	CCATGG	1 cut(s)	595
NdeI	CATATG	1 cut(s)	1150
NheI	GCTAGC	1 cut(s)	1144
NlaIV	GGNNCC	5 cut(s)	249, 720, 729, 1029, 1309
NmeAIII	GCCGAG	1 cut(s)	1554
NruI	TCGCGA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	1763
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	856
OliI	CACNNNNGTG	1 cut(s)	1497
PaeI	GCATGC	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	324, 1617
PfeI	GAWTC	4 cut(s)	368, 672, 965, 1202
PflMI	CCANNNNNTGG	1 cut(s)	1529
PfoI	TCCNGGA	2 cut(s)	1432, 1774
PinAI	ACCGGT	2 cut(s)	166, 721
PkrI	GCNGC	5 cut(s)	819, 988, 1143, 1472, 1586
PmaCI	CACGTG	1 cut(s)	1319
PmlI	CACGTG	1 cut(s)	1319
Ppu21I	YACGTR	3 cut(s)	1319, 1343, 1517
PpuMI	RGGWCCY	3 cut(s)	605, 1094, 1242
PsiI	TTATAA	2 cut(s)	434, 1274
Psp5II	RGGWCCY	3 cut(s)	605, 1094, 1242
Psp6I	CCWGG	4 cut(s)	568, 895, 900, 1432
PspCI	CACGTG	1 cut(s)	1319
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	4 cut(s)	568, 895, 900, 1432
PspN4I	GGNNCC	5 cut(s)	249, 720, 729, 1029, 1309
PspPI	GGNCC	5 cut(s)	605, 727, 1094, 1190, 1242
PspPPI	RGGWCCY	3 cut(s)	605, 1094, 1242
PspXI	VCTCGAGB	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	3 cut(s)	115, 1027, 1399
RruI	TCGCGA	1 cut(s)	177
RsaI	GTAC	3 cut(s)	1332, 1341, 1807
RsaNI	GTAC	3 cut(s)	1331, 1340, 1806
RseI	CAYNNNNRTG	2 cut(s)	1317, 1497
SaqAI	TTAA	8 cut(s)	158, 564, 654, 677, 1221, 1488, 1755, 1821
SatI	GCNGC	5 cut(s)	818, 987, 1142, 1471, 1585
Sau96I	GGNCC	5 cut(s)	605, 727, 1094, 1190, 1242
ScrFI	CCNGG	7 cut(s)	252, 570, 706, 897, 902, 1434, 1776
SduI	GDGCHC	2 cut(s)	924, 1310
SfaNI	GCATC	5 cut(s)	99, 1012, 1097, 1336, 1770
SfcI	CTRYAG	1 cut(s)	619
Sfr274I	CTCGAG	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	5 cut(s)	605, 727, 1094, 1190, 1242
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	1317, 1497
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	686
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	930, 1145, 1187
StyD4I	CCNGG	7 cut(s)	250, 568, 704, 895, 900, 1432, 1774
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	325, 763, 1122, 1234
TaiI	ACGT	5 cut(s)	853, 1321, 1345, 1411, 1519
TaqI	TCGA	6 cut(s)	48, 269, 663, 856, 1047, 1479
TfiI	GAWTC	4 cut(s)	368, 672, 965, 1202
Tru1I	TTAA	8 cut(s)	158, 564, 654, 677, 1221, 1488, 1755, 1821
Tru9I	TTAA	8 cut(s)	158, 564, 654, 677, 1221, 1488, 1755, 1821
TscAI	CASTG	6 cut(s)	699, 832, 1083, 1237, 1546, 1732
TseI	GCWGC	5 cut(s)	817, 986, 1141, 1470, 1584
TspDTI	ATGAA	6 cut(s)	16, 616, 690, 934, 1008, 1712
TspRI	CASTG	6 cut(s)	699, 832, 1083, 1237, 1546, 1732
Van91I	CCANNNNNTGG	1 cut(s)	1529
VpaK11BI	GGWCC	5 cut(s)	605, 727, 1094, 1190, 1242
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	4 cut(s)	23, 63, 135, 473
XceI	RCATGY	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	268
XmiI	GTMKAC	2 cut(s)	448, 1555
XmnI	GAANNNNTTC	2 cut(s)	324, 1617
XspI	CTAG	3 cut(s)	930, 1145, 1187
Zsp2I	ATGCAT	1 cut(s)	1763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.