Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007900

Physical Location & Seq

Genomic Coordinates Reverse (-)

54112158 .. 54117221

Gene Structure 5064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGGAAGACCAAATCAAAGCGGAATTCATCAAGAGCGACTTCACTCTCGACGAAGAAGGCGAAATTCTCAAAAAATGTCTCACTTTCTGCATCAATTACAAGCTCACGCCTTCGGATCTCGTTTCAAGCTGGGAAATTTACTACCTCAACAGGCTGTTAAACGAACCGGTGGTTCGAGATGTCGAAATGGAAGGGTTTTTACAGCATTTGCAGAATGAGCAGAAAGAAGCTCTGAATAATAAGGAGGAACCCGGTCTGCATATCTACTCGAGTAATGATGTGGACATGATTTTGAATGGTGATATAGAGGAAACGGTTCTTCACACTCCAATATCCAAATCCCAGAACCACTATTCAGATTCACTCTACTCAACACCACAAACAAATGGGAACATTCCTTCTTCTGGAAAACCAACAAAGCTTATAACCCCCTTTGGTAGACGAACTGACAAGTTTGTTGTGAAATTTAGTATTGATAATATGCCAGATACAGAGAATGTCAAGAAGGAAGATGATAATGAGGATCAAGACGAAGATGACATTATCAGGAGGGTTAAGCCTGGGAAGAGGTGTTCTTTAGTAGTCCATGGTTCAGGTCCTGAAATAGGCTGTAGGTTCATGTATGATAGGATTGCAGATAGGTTTAATGCACTCGAAACCCGAATTTTAAAGCATGCAGCTGCACTGGTTTCATCCGGGCAGTATGAGGAACCAGTGGACCCTACAATTTCTTCTGAGAAAAGCATATTTACGGTTGGGATGATCTGTTGTGATGGAGAAGGCCATTTGAATGAGAAGTCCACCTTGCTGCAAAGCAGTGCTGAACATTCTGGAGGCCAACGTGTTCGAATAGAGTTACACCATGTGAGCCAGTATTCAATCTTTCCAGGCCAGGTAGTAGGTATTGTGGGGCACAATCCTAGTGGACATTGCTTCATTGCTTCTAAACTGATTGATTCAATCCCTTTATCTGTTGCTGCTGATGAAAACTTGCATCCTGCGAAAAAGCCAGCTTTGGACCCGGAGAGTTTGTCAATCGATCTGGCCAGTCCACAACCAGAGCTATCAGTGATCATTGCATCAGGTCCTTTTACCACGATTGACAATTTACTGTTTGAACCTCTAAAAGAGCTGCTAGCATATGCAAACAGAAAGCTTCCTCAATTGCTTATATTGCTAGGACCATTTATTGATTCTGAACATCCAGAAATTAAGAAAGGCACTGTTGACAGGACCTTTGATGACATATTCCAATTTGAAATTATAAGAAGGTTGCAAGATTATGCAGAATACATGGGCTCCCATGCACGTGTCGTTCTTGTACCATCTGTACGTGATGCTAACCATGACTTTGTTTTCCCTCAGCCTCCCTTTGATATTCATCCTCCAGATCTCAAACGTCAGATCACAAGCATCACAAATCCAGGAATGTTCGAGGCAAATCAGGTCAAGATAGGTTGCTGCTCTGTCGATATTCTTAAACACCTTAGTGGAGAGGAGACCTCACGTATTCCAAAGGATGGAACACCCAGTGATCGCATGAGTAGACTTGCAAACCATATACTCGGCCAACGCAGCTTTTATCCTTTATATCCACCAGCAGAAAGTGTTCCATTGGATTTTTCACTTGCTCCAGAAGCTCTAAACATCTCATTGATCCCAGACATTCTCATCCTACCCTCTGACATGAAGTATTTTGTAAAGGTGCTGTCCCTCGGTGAAAGAAGTGAAGGAGAACTGCCGGTTAAATGCATCTGTGTCAATCCGGGAAGACTTGCAAAGGGAGAAGGAGGGGGTACTTTTGCAGAGCTTAACTACTATGGTAGTCCTGACACATCCAATGCTTCCATTATAGGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_E_B Pol_alpha_B_N

Protein Analysis

620

Amino Acids

68.98

Weight (kDa)

5.06

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_DPOA2	PF22062	229 - 319	1.2e-22	DNA polymerase alpha subunit B, OB domain
DNA_pol_E_B	PF04042	357 - 568	4e-49	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67630
fragaria_vesca	FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380 FvH4_4g24380
malus_domestica	MD13G1111800.v1.1 MD16G1111400.v1.1
prunus_persica	Prupe.1G233700_v2.0.a1 Prupe.1G233700_v2.0.a1
pyrus_communis	pycom13g09720 pycom16g09440
rosa_chinensis	RchiOBHm_Chr4g0431221
rosa_laevigata	RLG00000006918
rosa_multiflora	Rmu_sc0005258.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372760
rosa_rugosa	Rorug04G0249200 Rorug04G0249200
rosa_samantha	Rh4BG312700 Rh4CG329000 Rh4DG309300
rosa_wichuraiana	Rw4G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	425, 1265
AccB7I	CCANNNNNTGG	1 cut(s)	1520
AccI	GTMKAC	2 cut(s)	439, 1546
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	123, 531, 1651
AcoI	YGGCCR	2 cut(s)	1044, 1567
AcsI	RAATTY	5 cut(s)	23, 63, 135, 464, 663
AcvI	CACGTG	1 cut(s)	1310
AdeI	CACNNNGTG	2 cut(s)	865, 1532
AfaI	GTAC	3 cut(s)	1323, 1332, 1798
AfiI	CCNNNNNNNGG	3 cut(s)	404, 605, 1520
AflIII	ACRYGT	2 cut(s)	841, 1309
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	7 cut(s)	126, 295, 790, 879, 960, 1118, 1259
AjnI	CCWGG	4 cut(s)	559, 886, 891, 1423
AleI	CACNNNNGTG	1 cut(s)	1488
AloI	GAACNNNNNNTCC	2 cut(s)	556, 588
Alw26I	GTCTC	2 cut(s)	83, 1493
AlwI	GGATC	3 cut(s)	123, 531, 1651
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	5 cut(s)	781, 835, 889, 1044, 1567
ApeKI	GCWGC	7 cut(s)	677, 680, 808, 977, 1132, 1461, 1575
ApoI	RAATTY	5 cut(s)	23, 63, 135, 464, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	1220, 1252
AsiGI	ACCGGT	1 cut(s)	166
Asp700I	GAANNNNTTC	2 cut(s)	315, 1608
AspS9I	GGNCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
AsuC2I	CCSGG	4 cut(s)	252, 697, 1022, 1767
AsuHPI	GGTGA	2 cut(s)	311, 1730
AsuII	TTCGAA	1 cut(s)	847
AsuNHI	GCTAGC	1 cut(s)	1135
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
BaeGI	GKGCMC	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	1046
BanII	GRGCYC	1 cut(s)	1301
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbrPI	CACGTG	1 cut(s)	1310
BbsI	GAAGAC	2 cut(s)	12, 1777
BbvCI	CCTCAGC	1 cut(s)	1362
BbvI	GCAGC	7 cut(s)	667, 689, 795, 964, 1119, 1448, 1587
BccI	CCATC	3 cut(s)	767, 1333, 1514
BciT130I	CCWGG	4 cut(s)	561, 888, 893, 1425
BclI	TGATCA	1 cut(s)	1071
BcnI	CCSGG	4 cut(s)	252, 697, 1022, 1767
BcoDI	GTCTC	2 cut(s)	83, 1493
BfaI	CTAG	3 cut(s)	921, 1136, 1178
BfmI	CTRYAG	1 cut(s)	610
BglII	AGATCT	1 cut(s)	1390
BisI	GCNGC	7 cut(s)	678, 681, 809, 978, 1133, 1462, 1576
BlsI	GCNGC	7 cut(s)	679, 682, 810, 979, 1134, 1463, 1577
Bme1390I	CCNGG	8 cut(s)	252, 561, 697, 888, 893, 1022, 1425, 1767
Bme18I	GGWCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
BmiI	GGNNCC	5 cut(s)	249, 711, 720, 1020, 1300
BmrFI	CCNGG	8 cut(s)	252, 561, 697, 888, 893, 1022, 1425, 1767
BmrI	ACTGGG	1 cut(s)	1524
BmsI	GCATC	6 cut(s)	99, 1003, 1088, 1327, 1422, 1761
BmtI	GCTAGC	1 cut(s)	1139
BmuI	ACTGGG	1 cut(s)	1524
BpiI	GAAGAC	2 cut(s)	12, 1777
BplI	GAGNNNNNCTC	2 cut(s)	1487, 1519
BpmI	CTGGAG	3 cut(s)	852, 1371, 1617
Bpu10I	CCTNAGC	1 cut(s)	1362
Bpu14I	TTCGAA	1 cut(s)	847
BpuMI	CCSGG	4 cut(s)	252, 697, 1022, 1767
Bsa29I	ATCGAT	1 cut(s)	1038
BsaAI	YACGTR	3 cut(s)	1310, 1334, 1508
BsaBI	GATNNNNATC	1 cut(s)	1380
BsaI	GGTCTC	1 cut(s)	1493
BsaJI	CCNNGG	3 cut(s)	560, 586, 1714
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	4 cut(s)	1016, 1046, 1283, 1313
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 605, 1520
Bse118I	RCCGGY	2 cut(s)	166, 1741
Bse1I	ACTGG	5 cut(s)	690, 713, 871, 1047, 1530
Bse3DI	GCAATG	3 cut(s)	928, 936, 1074
Bse8I	GATNNNNATC	1 cut(s)	1380
BseBI	CCWGG	4 cut(s)	561, 888, 893, 1425
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	3 cut(s)	560, 586, 1714
BseGI	GGATG	8 cut(s)	692, 765, 994, 1201, 1381, 1525, 1671, 1835
BseJI	GATNNNNATC	1 cut(s)	1380
BseLI	CCNNNNNNNGG	3 cut(s)	404, 605, 1520
BseMI	GCAATG	3 cut(s)	928, 936, 1074
BseMII	CTCAG	2 cut(s)	726, 1376
BseNI	ACTGG	5 cut(s)	690, 713, 871, 1047, 1530
BseRI	GAGGAG	1 cut(s)	1511
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	7 cut(s)	667, 689, 795, 964, 1119, 1448, 1587
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	5 cut(s)	783, 837, 891, 1046, 1569
BshTI	ACCGGT	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	1038
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	6 cut(s)	167, 252, 696, 1022, 1742, 1766
BslFI	GGGAC	1 cut(s)	1696
BslI	CCNNNNNNNGG	3 cut(s)	404, 605, 1520
BsmAI	GTCTC	2 cut(s)	83, 1493
BsmFI	GGGAC	1 cut(s)	1696
BsnI	GGCC	5 cut(s)	783, 837, 891, 1046, 1569
Bso31I	GGTCTC	1 cut(s)	1493
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	847
Bsp1286I	GDGCHC	2 cut(s)	915, 1301
Bsp143I	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	5 cut(s)	783, 837, 891, 1046, 1569
BspCNI	CTCAG	2 cut(s)	727, 1375
BspDI	ATCGAT	1 cut(s)	1038
BspLI	GGNNCC	5 cut(s)	249, 711, 720, 1020, 1300
BspOI	GCTAGC	1 cut(s)	1139
BspPI	GGATC	3 cut(s)	123, 531, 1651
BspT104I	TTCGAA	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	1493
BsrDI	GCAATG	3 cut(s)	928, 936, 1074
BsrFI	RCCGGY	2 cut(s)	166, 1741
BsrI	ACTGG	5 cut(s)	690, 713, 871, 1047, 1530
BssAI	RCCGGY	2 cut(s)	166, 1741
BssECI	CCNNGG	3 cut(s)	560, 586, 1714
BssMI	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	4 cut(s)	561, 888, 893, 1425
Bst4CI	ACNGT	4 cut(s)	316, 754, 1113, 1225
Bst6I	CTCTTC	1 cut(s)	560
BstBAI	YACGTR	3 cut(s)	1310, 1334, 1508
BstBI	TTCGAA	1 cut(s)	847
BstC8I	GCNNGC	3 cut(s)	675, 1011, 1137
BstDEI	CTNAG	3 cut(s)	735, 1362, 1487
BstDSI	CCRYGG	1 cut(s)	586
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	8 cut(s)	692, 765, 994, 1201, 1381, 1525, 1671, 1835
BstKTI	GATC	9 cut(s)	118, 526, 765, 1042, 1074, 1393, 1407, 1537, 1659
BstMAI	GTCTC	2 cut(s)	83, 1493
BstMBI	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 1174, 1575, 1637
BstNI	CCWGG	4 cut(s)	561, 888, 893, 1425
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	8 cut(s)	250, 559, 695, 886, 891, 1020, 1423, 1765
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	915
BstV1I	GCAGC	7 cut(s)	667, 689, 795, 964, 1119, 1448, 1587
BstV2I	GAAGAC	2 cut(s)	12, 1777
BstX2I	RGATCY	2 cut(s)	115, 1390
BstYI	RGATCY	2 cut(s)	115, 1390
Bsu15I	ATCGAT	1 cut(s)	1038
BsuRI	GGCC	5 cut(s)	783, 837, 891, 1046, 1569
BsuTUI	ATCGAT	1 cut(s)	1038
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	8 cut(s)	692, 765, 994, 1201, 1381, 1525, 1671, 1835
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	6 cut(s)	683, 720, 823, 1074, 1221, 1537
Cac8I	GCNNGC	3 cut(s)	675, 1011, 1137
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr10I	RCCGGY	2 cut(s)	166, 1741
Cfr13I	GGNCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
ClaI	ATCGAT	1 cut(s)	1038
Csp6I	GTAC	3 cut(s)	1322, 1331, 1797
CspAI	ACCGGT	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviQI	GTAC	3 cut(s)	1322, 1331, 1797
DdeI	CTNAG	3 cut(s)	735, 1362, 1487
DpnI	GATC	9 cut(s)	117, 525, 764, 1041, 1073, 1392, 1406, 1536, 1658
DpnII	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
DraI	TTTAAA	1 cut(s)	669
DraIII	CACNNNGTG	2 cut(s)	865, 1532
EaeI	YGGCCR	2 cut(s)	1044, 1567
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	1301
Eco31I	GGTCTC	1 cut(s)	1493
Eco47I	GGWCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
Eco72I	CACGTG	1 cut(s)	1310
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	3 cut(s)	596, 1085, 1233
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	4 cut(s)	559, 886, 891, 1423
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	1754
EcoT38I	GRGCYC	1 cut(s)	1301
ErhI	CCWWGG	1 cut(s)	586
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 788, 820
FaqI	GGGAC	1 cut(s)	1696
FauNDI	CATATG	1 cut(s)	1141
FbaI	TGATCA	1 cut(s)	1071
FblI	GTMKAC	2 cut(s)	439, 1546
Fnu4HI	GCNGC	7 cut(s)	678, 681, 809, 978, 1133, 1462, 1576
FokI	GGATG	8 cut(s)	679, 772, 981, 1188, 1368, 1532, 1658, 1822
FriOI	GRGCYC	1 cut(s)	1301
Fsp4HI	GCNGC	7 cut(s)	678, 681, 809, 978, 1133, 1462, 1576
FspBI	CTAG	3 cut(s)	921, 1136, 1178
GluI	GCNGC	7 cut(s)	678, 681, 809, 978, 1133, 1462, 1576
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	3 cut(s)	852, 1371, 1617
HaeIII	GGCC	5 cut(s)	783, 837, 891, 1046, 1569
HapII	CCGG	6 cut(s)	167, 252, 696, 1022, 1742, 1766
HincII	GTYRAC	1 cut(s)	1228
HindII	GTYRAC	1 cut(s)	1228
HindIII	AAGCTT	2 cut(s)	419, 1154
HinfI	GANTC	3 cut(s)	359, 956, 1193
HpaII	CCGG	6 cut(s)	167, 252, 696, 1022, 1742, 1766
HphI	GGTGA	2 cut(s)	311, 1730
Hpy166II	GTNNAC	8 cut(s)	283, 440, 718, 801, 926, 1052, 1228, 1547
Hpy188I	TCNGA	7 cut(s)	115, 234, 358, 736, 1198, 1404, 1684
Hpy8I	GTNNAC	8 cut(s)	283, 440, 718, 801, 926, 1052, 1228, 1547
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	9 cut(s)	50, 120, 185, 408, 499, 773, 1263, 1724, 1781
HpyCH4III	ACNGT	4 cut(s)	316, 754, 1113, 1225
HpyCH4IV	ACGT	5 cut(s)	841, 1309, 1333, 1399, 1507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 1174, 1575, 1637
HpyF3I	CTNAG	3 cut(s)	735, 1362, 1487
HpySE526I	ACGT	5 cut(s)	841, 1309, 1333, 1399, 1507
Ksp22I	TGATCA	1 cut(s)	1071
Kzo9I	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
LmnI	GCTCC	2 cut(s)	1304, 1636
Lsp1109I	GCAGC	7 cut(s)	667, 689, 795, 964, 1119, 1448, 1587
LweI	GCATC	6 cut(s)	99, 1003, 1088, 1327, 1422, 1761
MaeI	CTAG	3 cut(s)	921, 1136, 1178
MaeII	ACGT	5 cut(s)	841, 1309, 1333, 1399, 1507
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	9 cut(s)	117, 525, 764, 1041, 1073, 1392, 1406, 1536, 1658
MboI	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
MboII	GAAGA	9 cut(s)	17, 65, 311, 393, 521, 545, 577, 723, 1782
MfeI	CAATTG	1 cut(s)	1163
MflI	RGATCY	2 cut(s)	115, 1390
MhlI	GDGCHC	2 cut(s)	915, 1301
MlsI	TGGCCA	1 cut(s)	1046
MluNI	TGGCCA	1 cut(s)	1046
Mox20I	TGGCCA	1 cut(s)	1046
Mph1103I	ATGCAT	1 cut(s)	1754
MroXI	GAANNNNTTC	2 cut(s)	315, 1608
MscI	TGGCCA	1 cut(s)	1046
MseI	TTAA	8 cut(s)	158, 555, 645, 668, 1212, 1479, 1746, 1812
MslI	CAYNNNNRTG	3 cut(s)	789, 1308, 1488
Msp20I	TGGCCA	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	6 cut(s)	167, 252, 696, 1022, 1742, 1766
MspR9I	CCNGG	8 cut(s)	252, 561, 697, 888, 893, 1022, 1425, 1767
MunI	CAATTG	1 cut(s)	1163
MvaI	CCWGG	4 cut(s)	561, 888, 893, 1425
MwoI	GCNNNNNNNGC	4 cut(s)	217, 1174, 1575, 1637
NciI	CCSGG	4 cut(s)	252, 697, 1022, 1767
NcoI	CCATGG	1 cut(s)	586
NdeI	CATATG	1 cut(s)	1141
NdeII	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
NheI	GCTAGC	1 cut(s)	1135
NlaIV	GGNNCC	5 cut(s)	249, 711, 720, 1020, 1300
NmeAIII	GCCGAG	1 cut(s)	1545
NsiI	ATGCAT	1 cut(s)	1754
NspI	RCATGY	1 cut(s)	677
NspV	TTCGAA	1 cut(s)	847
OliI	CACNNNNGTG	1 cut(s)	1488
PaeI	GCATGC	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	315, 1608
PfeI	GAWTC	3 cut(s)	359, 956, 1193
PflMI	CCANNNNNTGG	1 cut(s)	1520
PfoI	TCCNGGA	2 cut(s)	1423, 1765
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	7 cut(s)	679, 682, 810, 979, 1134, 1463, 1577
PmaCI	CACGTG	1 cut(s)	1310
PmlI	CACGTG	1 cut(s)	1310
Ppu21I	YACGTR	3 cut(s)	1310, 1334, 1508
PpuMI	RGGWCCY	3 cut(s)	596, 1085, 1233
PsiI	TTATAA	2 cut(s)	425, 1265
Psp5II	RGGWCCY	3 cut(s)	596, 1085, 1233
Psp6I	CCWGG	4 cut(s)	559, 886, 891, 1423
PspCI	CACGTG	1 cut(s)	1310
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	4 cut(s)	559, 886, 891, 1423
PspN4I	GGNNCC	5 cut(s)	249, 711, 720, 1020, 1300
PspPI	GGNCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
PspPPI	RGGWCCY	3 cut(s)	596, 1085, 1233
PspXI	VCTCGAGB	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	115, 1390
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	1323, 1332, 1798
RsaNI	GTAC	3 cut(s)	1322, 1331, 1797
RseI	CAYNNNNRTG	3 cut(s)	789, 1308, 1488
SaqAI	TTAA	8 cut(s)	158, 555, 645, 668, 1212, 1479, 1746, 1812
SatI	GCNGC	7 cut(s)	678, 681, 809, 978, 1133, 1462, 1576
Sau3AI	GATC	9 cut(s)	115, 523, 762, 1039, 1071, 1390, 1404, 1534, 1656
Sau96I	GGNCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
ScrFI	CCNGG	8 cut(s)	252, 561, 697, 888, 893, 1022, 1425, 1767
SduI	GDGCHC	2 cut(s)	915, 1301
SfaNI	GCATC	6 cut(s)	99, 1003, 1088, 1327, 1422, 1761
SfcI	CTRYAG	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	847
SinI	GGWCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	3 cut(s)	789, 1308, 1488
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	677
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	921, 1136, 1178
StyD4I	CCNGG	8 cut(s)	250, 559, 695, 886, 891, 1020, 1423, 1765
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	4 cut(s)	316, 754, 1113, 1225
TaiI	ACGT	5 cut(s)	844, 1312, 1336, 1402, 1510
TaqI	TCGA	9 cut(s)	48, 175, 183, 269, 654, 847, 1038, 1434, 1470
TfiI	GAWTC	3 cut(s)	359, 956, 1193
Tru1I	TTAA	8 cut(s)	158, 555, 645, 668, 1212, 1479, 1746, 1812
Tru9I	TTAA	8 cut(s)	158, 555, 645, 668, 1212, 1479, 1746, 1812
TscAI	CASTG	6 cut(s)	690, 720, 823, 1074, 1228, 1537
TseI	GCWGC	7 cut(s)	677, 680, 808, 977, 1132, 1461, 1575
TspDTI	ATGAA	7 cut(s)	16, 607, 681, 925, 999, 1370, 1703
TspRI	CASTG	6 cut(s)	690, 720, 823, 1074, 1228, 1537
Van91I	CCANNNNNTGG	1 cut(s)	1520
VpaK11BI	GGWCC	6 cut(s)	596, 718, 1018, 1085, 1181, 1233
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	5 cut(s)	23, 63, 135, 464, 663
XceI	RCATGY	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	268
XmiI	GTMKAC	2 cut(s)	439, 1546
XmnI	GAANNNNTTC	2 cut(s)	315, 1608
XspI	CTAG	3 cut(s)	921, 1136, 1178
Zsp2I	ATGCAT	1 cut(s)	1754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.