Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016144

Physical Location & Seq

Genomic Coordinates Reverse (-)

9774999 .. 9779778

Gene Structure 4780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1129400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGTCGTCTTCCTTCGCAGTCCAATGTTCTCTGCTACCTTCCCGTGCTTTACACCATCCCGATCAGACTCCGTTCGCAAAAGCTTCCAACTTTGCTCAAATTCCATCGTGGGTCTCTCTTAAATCCACCGGTCCGTCGATCGAAACCCGCCAAACAGAACTGGGCCAGGTCGAAAATGTGCACTTGGTTTCTCTCTCCAAGCAAGGGAAGCTCAGAGAAGCGCGCCAATTTCTCGAGCAGATGAACGAAGCCGGTGTATCCGTGAGTCCTCAATCGTATAAATGTTTATTTGAAATGTGTGGATTAAAGGGTTCGTTGTTAGATGGAAAATCTGTGCACAGATGGTTAAGAAGGACAGTGAAGAACCCACCTGAGTTTCTTGAGAACGACGCTCTGCAGATGTATTGCGAATGCGGAAGTTTATCGGATGCACAGAAGGTGTTTGATGAGATGCCTGAGAGGAATTTGGTTTCTTGGGTTATAATTATATCGGCATATGCGCAGAAGGGTATTCTGAAAAGAGCTATTTCGATGTTTTCAAAAATGCTGGAGTCTGGGATTAGACCGAATGCATCGATTTTTACAAGCGTTTTAAGTTCCTTGACTGAGGATTCGCTTTTGGAGCTTGGGAAACAGATACATTCTTATGTGATAAGAAGTGAAATGAGTAGTAATGTTTCGGTTGAAACCGGGATTGCAAACATGTATGTGAAGTGTGGGTGGTTAGAGGGTGCTAGGCTTGTTTTCGATAGGATGGAAGAAAGGAATGCTGTGGTTTGGACTGGGTTGATGGTAGGCTATACTGAAGATGAGAAACCGGAGGAGATTTTGGAATTGTTTGCTGAGATGGTTAGGAAAAGTGTAGAGGTGGATGATTTTGTATTTTCGATAGTTCTCAAGGCATGTGCTGGTTTGCAGGACTTGAATATGGGAAGGCAAATTCATGGCTACAGTGTTAAACTTGGGTTGGATTCTGATGTTTCTGTAGGAACTCCTCTAGTGGACTTCTATGCCAAATGTGCAAAATTTGAGTCTGCTTGCAGAGCATTCGAAAGGATACATGAACCAAATGATGTTTCATGGAGTGCTATAATCTCTGGCTATTGCCAATGTGGGAAATTTGAGGAGTGTGTCAAGATTTTTCAATCTTTAATTACTAAAGATGTTACCTTAAATTCGTTTGTATATACAAGCATTTTTCAAGCCTGTTCTGCAATCGTGGATATAAATTTGGGGACTCAAGTTCATGCTGATGCAATAAAAAGAGGGCTCATTGCATTCTTGCATGGAACAAGTGCATTGATTACGATGTACTCAAAATGTGGCAGATTGGATTGTGCCTATCGAGCATTTGAATCAATAGATAAACCTGATGCTGTGGCCTGGACTGCAATAATATGTGGTTATGCTTATCACGGCAATGCCTCCGAAGCTCTTACACTTTTCAATAGAATGCAGGATTCCGGCGTAAAGCCAAACTCAGTTACATTTATAGCAGTTTTAACTGCCTGCAGCCATTCAGGTTTGGTGACTGACGGAAAGCAGTTTTTGGAATCAATGAGTAGTGTATATCATGTAGAACCAACCATTGATCATTACGATTGTATGATTGACATATACTCCCGTGCTGGGCAACTACAAGAGGCACTTGATCTGATAAAGAGCATGCCGTTTGAACCCGATGCAATGAGCTGGAAAAGTTTATTGGGTGGATGCTGGATACATCGAAATCTTGAGCTCGGAAAGTTAGCAGCTGAGAACCTCCTCCAATTGGACCCAGAGGACACTGCTAGTTACATTATCATGTTTAATTTGTATGCATCATCCGGGAAGTGGGAAGAAGCTGCAGTTTATAGAAGAATGATGGCTGAAAGGAACTTGAGGAAAGAAATCGGATGCAGCTGGATAACCGTCAAGGGTGAAAAGCATCGGTTTGTAGTGGGTGATCAACACCATTCTCAGATAGAACAGATATACACGAAACTGAAGGAGCTGAGCATTTCTTTCAGGGATGCTGAAGATTCGCTTCTTACCGAGGAGGACGTATTGAGCGGTTTTCCCGAAAGGAAAGAACAGCTTCTTGACCACAGTGAGAGACTTGCTATAGCATTTGGGGTTATTTCCATACCAGGTGATGCTCCTATTGTGGTTTTTAAGAACATCAGGGCGTGCAAAGATTGCCATGAGTTTGCAAAACATGTTTCTGTGGTAACGGGGCGTGCAATTGTTGTGAGAGATTCCAACAGATTCCATCACTTCGAGTTTGGGGAGTGTTCTTGCAGAGATTATTGGTTCCATGTCGCTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

771

Amino Acids

86.29

Weight (kDa)

5.7

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 201	8e-07	PPR repeat family
PPR_2	PF13041	256 - 303	1.1e-08	PPR repeat family
PPR_2	PF13041	356 - 403	2.9e-09	PPR repeat family
PPR	PF01535	359 - 388	5.8e-07	PPR repeat
PPR_3	PF13812	456 - 504	4.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	457 - 505	1.6e-12	PPR repeat family
PPR	PF01535	460 - 490	2e-06	PPR repeat
E_motif	PF20431	575 - 636	1.4e-14	E motif
DYW_deaminase	PF14432	688 - 764	8.4e-29	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13270
fragaria_vesca	FvH4_4g22810
malus_domestica	MD13G1129400.v1.1
prunus_persica	Prupe.1G217000_v2.0.a1
pyrus_communis	pycom13g11240
rosa_chinensis	RchiOBHm_Chr4g0429041
rosa_laevigata	RLG00000007101
rosa_multiflora	Rmu_sc0008629.1_g000019
rosa_roxburghii	Rroxscaffold_5G00370690
rosa_rugosa	Rorug04G0232300
rosa_samantha	Rh4AG288300 Rh4BG294500 Rh4CG310000 Rh4DG291400
rosa_wichuraiana	Rw4G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	2052
AccII	CGCG	1 cut(s)	223
AciI	CCGC	3 cut(s)	148, 414, 2052
AcsI	RAATTY	7 cut(s)	99, 463, 939, 1025, 1118, 1174, 1228
AcuI	CTGAAG	3 cut(s)	825, 2006, 2037
AfaI	GTAC	1 cut(s)	1313
AfiI	CCNNNNNNNGG	4 cut(s)	204, 1629, 1771, 1833
AflIII	ACRYGT	2 cut(s)	702, 2197
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	9 cut(s)	293, 540, 686, 925, 1145, 1202, 1355, 1447, 1676
AjnI	CCWGG	3 cut(s)	165, 1382, 2128
AjuI	GAANNNNNNNTTGG	4 cut(s)	1060, 1092, 1688, 1720
Alw21I	GWGCWC	3 cut(s)	183, 339, 1740
Alw26I	GTCTC	2 cut(s)	118, 2089
Alw44I	GTGCAC	2 cut(s)	179, 335
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	163, 1380
ApaLI	GTGCAC	2 cut(s)	179, 335
ApeKI	GCWGC	4 cut(s)	1512, 1751, 1844, 1899
ApoI	RAATTY	7 cut(s)	99, 463, 939, 1025, 1118, 1174, 1228
ArsI	GACNNNNNNTTYG	4 cut(s)	595, 627, 1016, 1048
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	2076
AspLEI	GCGC	3 cut(s)	223, 225, 502
AspS9I	GGNCC	3 cut(s)	131, 163, 1774
AsuC2I	CCSGG	2 cut(s)	691, 1828
AsuHPI	GGTGA	4 cut(s)	1540, 1931, 1955, 2144
AsuII	TTCGAA	1 cut(s)	1050
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	131, 1774
BaeGI	GKGCMC	2 cut(s)	183, 339
BanII	GRGCYC	2 cut(s)	1272, 1740
Bbv12I	GWGCWC	3 cut(s)	183, 339, 1740
BbvI	GCAGC	4 cut(s)	1524, 1763, 1831, 1911
BccI	CCATC	9 cut(s)	63, 112, 317, 336, 748, 784, 841, 1858, 2259
BceAI	ACGGC	2 cut(s)	1432, 1654
BcgI	CGANNNNNNTGC	2 cut(s)	1030, 1064
BciT130I	CCWGG	3 cut(s)	167, 1384, 2130
BciVI	GTATCC	3 cut(s)	268, 1050, 1713
BclI	TGATCA	2 cut(s)	1591, 1945
BcnI	CCSGG	2 cut(s)	691, 1828
BcoDI	GTCTC	2 cut(s)	118, 2089
BfaI	CTAG	3 cut(s)	735, 998, 1791
BfmI	CTRYAG	6 cut(s)	395, 949, 984, 1510, 1845, 2103
BfuI	GTATCC	3 cut(s)	268, 1050, 1713
BisI	GCNGC	4 cut(s)	1513, 1752, 1845, 1900
BlpI	GCTNAGC	1 cut(s)	1994
BlsI	GCNGC	4 cut(s)	1514, 1753, 1846, 1901
Bme1390I	CCNGG	5 cut(s)	167, 691, 1384, 1828, 2130
Bme18I	GGWCC	2 cut(s)	131, 1774
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	131, 163, 1774
BmiI	GGNNCC	2 cut(s)	1776, 2294
BmrFI	CCNGG	5 cut(s)	167, 691, 1384, 1828, 2130
BmrI	ACTGGG	2 cut(s)	170, 792
BmuI	ACTGGG	2 cut(s)	170, 792
BpmI	CTGGAG	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	1994
Bpu14I	TTCGAA	1 cut(s)	1050
BpuEI	CTTGAG	5 cut(s)	401, 881, 1224, 1754, 1900
BpuMI	CCSGG	2 cut(s)	691, 1828
Bsa29I	ATCGAT	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	2034
BsaWI	WCCGGW	2 cut(s)	128, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	1604, 1634
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 1629, 1771, 1833
Bse118I	RCCGGY	2 cut(s)	128, 251
Bse1I	ACTGG	2 cut(s)	165, 787
Bse3DI	GCAATG	3 cut(s)	1272, 1426, 1692
BseBI	CCWGG	3 cut(s)	167, 1384, 2130
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	2034
BseGI	GGATG	8 cut(s)	55, 433, 759, 877, 1718, 1823, 1901, 2017
BseLI	CCNNNNNNNGG	4 cut(s)	204, 1629, 1771, 1833
BseMI	GCAATG	3 cut(s)	1272, 1426, 1692
BseMII	CTCAG	9 cut(s)	226, 363, 447, 597, 834, 1494, 1746, 1973, 1985
BseNI	ACTGG	2 cut(s)	165, 787
BsePI	GCGCGC	1 cut(s)	221
BseRI	GAGGAG	5 cut(s)	836, 984, 1139, 1754, 2051
BseSI	GKGCMC	2 cut(s)	183, 339
BseXI	GCAGC	4 cut(s)	1524, 1763, 1831, 1911
BseYI	CCCAGC	1 cut(s)	1628
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	165, 1382
BshTI	ACCGGT	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	575
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	3 cut(s)	183, 339, 1740
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	6 cut(s)	129, 252, 690, 818, 1464, 1827
BslFI	GGGAC	1 cut(s)	1249
BslI	CCNNNNNNNGG	4 cut(s)	204, 1629, 1771, 1833
BsmAI	GTCTC	2 cut(s)	118, 2089
BsmFI	GGGAC	1 cut(s)	1249
BsmI	GAATGC	6 cut(s)	416, 574, 772, 1046, 1277, 1458
BsnI	GGCC	2 cut(s)	165, 1382
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	4 cut(s)	183, 339, 1272, 1740
Bsp143I	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
Bsp1720I	GCTNAGC	1 cut(s)	1994
BspACI	CCGC	3 cut(s)	148, 414, 2052
BspANI	GGCC	2 cut(s)	165, 1382
BspCNI	CTCAG	9 cut(s)	225, 364, 448, 598, 835, 1493, 1747, 1972, 1986
BspDI	ATCGAT	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	1776, 2294
BspMAI	CTGCAG	3 cut(s)	399, 1514, 1849
BspT104I	TTCGAA	1 cut(s)	1050
BspTNI	GGTCTC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	2052
BsrDI	GCAATG	3 cut(s)	1272, 1426, 1692
BsrFI	RCCGGY	2 cut(s)	128, 251
BsrI	ACTGG	2 cut(s)	165, 787
BssAI	RCCGGY	2 cut(s)	128, 251
BssECI	CCNNGG	1 cut(s)	2034
BssHII	GCGCGC	1 cut(s)	221
BssMI	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
Bst2UI	CCWGG	3 cut(s)	167, 1384, 2130
Bst4CI	ACNGT	4 cut(s)	358, 953, 1912, 2090
BstAPI	GCANNNNNTGC	1 cut(s)	2178
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	6 cut(s)	223, 1039, 1510, 1667, 2170, 2220
BstDEI	CTNAG	9 cut(s)	212, 372, 456, 606, 843, 1480, 1755, 1959, 1994
BstF5I	GGATG	8 cut(s)	55, 433, 759, 877, 1718, 1823, 1901, 2017
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	3 cut(s)	223, 225, 502
BstKTI	GATC	5 cut(s)	64, 141, 1594, 1654, 1948
BstMAI	GTCTC	2 cut(s)	118, 2089
BstMBI	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	9 cut(s)	208, 622, 1019, 1043, 1211, 1346, 1388, 1430, 2178
BstNI	CCWGG	3 cut(s)	167, 1384, 2130
BstNSI	RCATGY	4 cut(s)	706, 906, 1669, 2201
BstSCI	CCNGG	5 cut(s)	165, 689, 1382, 1826, 2128
BstSFI	CTRYAG	6 cut(s)	395, 949, 984, 1510, 1845, 2103
BstSLI	GKGCMC	2 cut(s)	183, 339
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	1524, 1763, 1831, 1911
Bsu15I	ATCGAT	1 cut(s)	575
BsuI	GTATCC	3 cut(s)	268, 1050, 1713
BsuRI	GGCC	2 cut(s)	165, 1382
BsuTUI	ATCGAT	1 cut(s)	575
BtsCI	GGATG	8 cut(s)	55, 433, 759, 877, 1718, 1823, 1901, 2017
BtsI	GCAGTG	1 cut(s)	1785
BtsIMutI	CAGTG	4 cut(s)	363, 958, 1785, 2095
Cac8I	GCNNGC	6 cut(s)	223, 1039, 1510, 1667, 2170, 2220
CfoI	GCGC	3 cut(s)	223, 225, 502
Cfr10I	RCCGGY	2 cut(s)	128, 251
Cfr13I	GGNCC	3 cut(s)	131, 163, 1774
ClaI	ATCGAT	1 cut(s)	575
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	2128
Csp6I	GTAC	1 cut(s)	1312
CspAI	ACCGGT	1 cut(s)	128
CspI	CGGWCCG	1 cut(s)	131
CviQI	GTAC	1 cut(s)	1312
DdeI	CTNAG	9 cut(s)	212, 372, 456, 606, 843, 1480, 1755, 1959, 1994
DpnI	GATC	5 cut(s)	63, 140, 1593, 1653, 1947
DpnII	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
Ecl136II	GAGCTC	1 cut(s)	1738
Eco24I	GRGCYC	2 cut(s)	1272, 1740
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	131, 1774
Eco53kI	GAGCTC	1 cut(s)	1738
Eco57I	CTGAAG	3 cut(s)	825, 2006, 2037
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	1738
EcoRII	CCWGG	3 cut(s)	165, 1382, 2128
EcoT22I	ATGCAT	2 cut(s)	574, 1822
EcoT38I	GRGCYC	2 cut(s)	1272, 1740
FalI	AAGNNNNNCTT	6 cut(s)	1632, 1664, 2010, 2042, 2061, 2093
FaqI	GGGAC	1 cut(s)	1249
FauI	CCCGC	1 cut(s)	155
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	2 cut(s)	1591, 1945
Fnu4HI	GCNGC	4 cut(s)	1513, 1752, 1845, 1900
FokI	GGATG	8 cut(s)	42, 440, 766, 884, 1725, 1810, 1908, 2024
FriOI	GRGCYC	2 cut(s)	1272, 1740
Fsp4HI	GCNGC	4 cut(s)	1513, 1752, 1845, 1900
FspBI	CTAG	3 cut(s)	735, 998, 1791
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	3 cut(s)	222, 224, 501
GluI	GCNGC	4 cut(s)	1513, 1752, 1845, 1900
GsaI	CCCAGC	1 cut(s)	1632
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	165, 1382
HapII	CCGG	6 cut(s)	129, 252, 690, 818, 1464, 1827
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	3 cut(s)	223, 225, 502
Hin6I	GCGC	3 cut(s)	221, 223, 500
HinP1I	GCGC	3 cut(s)	221, 223, 500
HindIII	AAGCTT	1 cut(s)	81
HpaII	CCGG	6 cut(s)	129, 252, 690, 818, 1464, 1827
HphI	GGTGA	4 cut(s)	1540, 1931, 1955, 2144
Hpy166II	GTNNAC	3 cut(s)	181, 337, 1003
Hpy188III	TCNNGA	7 cut(s)	59, 233, 380, 1135, 1733, 2060, 2081
Hpy8I	GTNNAC	3 cut(s)	181, 337, 1003
Hpy99I	CGWCG	2 cut(s)	139, 392
HpyAV	CCTTC	7 cut(s)	22, 48, 345, 430, 499, 927, 1981
HpyCH4III	ACNGT	4 cut(s)	358, 953, 1912, 2090
HpyCH4IV	ACGT	1 cut(s)	2043
HpyF10VI	GCNNNNNNNGC	9 cut(s)	208, 622, 1019, 1043, 1211, 1346, 1388, 1430, 2178
HpyF3I	CTNAG	9 cut(s)	212, 372, 456, 606, 843, 1480, 1755, 1959, 1994
HpySE526I	ACGT	1 cut(s)	2043
HspAI	GCGC	3 cut(s)	221, 223, 500
Ksp22I	TGATCA	2 cut(s)	1591, 1945
Kzo9I	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
LmnI	GCTCC	3 cut(s)	622, 1990, 2143
Lsp1109I	GCAGC	4 cut(s)	1524, 1763, 1831, 1911
MabI	ACCWGGT	1 cut(s)	2128
MaeI	CTAG	3 cut(s)	735, 998, 1791
MaeII	ACGT	1 cut(s)	2043
MaeIII	GTNAC	5 cut(s)	1165, 1483, 1528, 1793, 2209
MalI	GATC	5 cut(s)	63, 140, 1593, 1653, 1947
MbiI	CCGCTC	1 cut(s)	2052
MboI	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
MboII	GAAGA	6 cut(s)	373, 770, 818, 1850, 1869, 2030
MfeI	CAATTG	2 cut(s)	1769, 2223
MhlI	GDGCHC	4 cut(s)	183, 339, 1272, 1740
MlyI	GAGTC	5 cut(s)	61, 274, 560, 1040, 1231
MmeI	TCCRAC	3 cut(s)	111, 948, 2265
Mph1103I	ATGCAT	2 cut(s)	574, 1822
MroXI	GAANNNNTTC	1 cut(s)	2076
MslI	CAYNNNNRTG	5 cut(s)	645, 707, 1251, 1419, 1802
MspA1I	CMGCKG	2 cut(s)	1754, 1902
MspI	CCGG	6 cut(s)	129, 252, 690, 818, 1464, 1827
MspR9I	CCNGG	5 cut(s)	167, 691, 1384, 1828, 2130
MunI	CAATTG	2 cut(s)	1769, 2223
Mva1269I	GAATGC	6 cut(s)	416, 574, 772, 1046, 1277, 1458
MvaI	CCWGG	3 cut(s)	167, 1384, 2130
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	9 cut(s)	208, 622, 1019, 1043, 1211, 1346, 1388, 1430, 2178
NciI	CCSGG	2 cut(s)	691, 1828
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
NlaIV	GGNNCC	2 cut(s)	1776, 2294
NmuCI	GTSAC	1 cut(s)	1528
NsbI	TGCGCA	1 cut(s)	501
NsiI	ATGCAT	2 cut(s)	574, 1822
NspI	RCATGY	4 cut(s)	706, 906, 1669, 2201
NspV	TTCGAA	1 cut(s)	1050
PaeI	GCATGC	1 cut(s)	1669
PaeR7I	CTCGAG	1 cut(s)	233
PauI	GCGCGC	1 cut(s)	221
PciI	ACATGT	2 cut(s)	702, 2197
PctI	GAATGC	6 cut(s)	416, 574, 772, 1046, 1277, 1458
PdmI	GAANNNNTTC	1 cut(s)	2076
PfeI	GAWTC	8 cut(s)	611, 971, 1355, 1460, 1553, 2021, 2237, 2247
PfoI	TCCNGGA	1 cut(s)	1826
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	1514, 1753, 1846, 1901
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	5 cut(s)	61, 273, 559, 1039, 1231
PpsI	GAGTC	5 cut(s)	61, 273, 559, 1039, 1231
PscI	ACATGT	2 cut(s)	702, 2197
PsiI	TTATAA	1 cut(s)	482
Psp124BI	GAGCTC	1 cut(s)	1740
Psp6I	CCWGG	3 cut(s)	165, 1382, 2128
PspFI	CCCAGC	1 cut(s)	1628
PspGI	CCWGG	3 cut(s)	165, 1382, 2128
PspN4I	GGNNCC	2 cut(s)	1776, 2294
PspPI	GGNCC	3 cut(s)	131, 163, 1774
PstI	CTGCAG	3 cut(s)	399, 1514, 1849
PteI	GCGCGC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	141
PvuII	CAGCTG	2 cut(s)	1754, 1902
RsaI	GTAC	1 cut(s)	1313
RsaNI	GTAC	1 cut(s)	1312
RseI	CAYNNNNRTG	5 cut(s)	645, 707, 1251, 1419, 1802
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	1740
SatI	GCNGC	4 cut(s)	1513, 1752, 1845, 1900
Sau3AI	GATC	5 cut(s)	61, 138, 1591, 1651, 1945
Sau96I	GGNCC	3 cut(s)	131, 163, 1774
SchI	GAGTC	5 cut(s)	61, 274, 560, 1040, 1231
ScrFI	CCNGG	5 cut(s)	167, 691, 1384, 1828, 2130
SduI	GDGCHC	4 cut(s)	183, 339, 1272, 1740
SexAI	ACCWGGT	1 cut(s)	2128
SfcI	CTRYAG	6 cut(s)	395, 949, 984, 1510, 1845, 2103
Sfr274I	CTCGAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	2 cut(s)	131, 1774
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	5 cut(s)	645, 707, 1251, 1419, 1802
SmlI	CTYRAG	6 cut(s)	233, 380, 896, 1239, 1733, 1879
SmoI	CTYRAG	6 cut(s)	233, 380, 896, 1239, 1733, 1879
SphI	GCATGC	1 cut(s)	1669
SsiI	CCGC	3 cut(s)	148, 414, 2052
SspMI	CTAG	3 cut(s)	735, 998, 1791
SstI	GAGCTC	1 cut(s)	1740
StyD4I	CCNGG	5 cut(s)	165, 689, 1382, 1826, 2128
TaaI	ACNGT	4 cut(s)	358, 953, 1912, 2090
TaiI	ACGT	1 cut(s)	2046
TaqII	GACCGA	1 cut(s)	580
TatI	WGTACW	1 cut(s)	1311
TfiI	GAWTC	8 cut(s)	611, 971, 1355, 1460, 1553, 2021, 2237, 2247
TscAI	CASTG	4 cut(s)	363, 958, 1792, 2095
TseFI	GTSAC	1 cut(s)	1528
TseI	GCWGC	4 cut(s)	1512, 1751, 1844, 1899
Tsp45I	GTSAC	1 cut(s)	1528
TspDTI	ATGAA	5 cut(s)	257, 932, 1068, 1077, 1235
TspGWI	ACGGA	4 cut(s)	60, 123, 250, 1551
TspRI	CASTG	4 cut(s)	363, 958, 1792, 2095
VneI	GTGCAC	2 cut(s)	179, 335
VpaK11BI	GGWCC	2 cut(s)	131, 1774
XapI	RAATTY	7 cut(s)	99, 463, 939, 1025, 1118, 1174, 1228
XceI	RCATGY	4 cut(s)	706, 906, 1669, 2201
XhoI	CTCGAG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	2076
XspI	CTAG	3 cut(s)	735, 998, 1791
Zsp2I	ATGCAT	2 cut(s)	574, 1822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.