Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016144

Physical Location & Seq

Genomic Coordinates Reverse (-)

39748741 .. 39749197

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGACCTTATGTTTATCTGGCCGGGTATTGATATCTCTAAGTCTCTTGCTTTCACTCCATTGATCCTCAACCCCATGAGAAGTGTAGGTGCTTATGTTGTAGGCGACCCTAATGCATACTTCATTAACATAAAGTTGATCAAAATCAACGAAAAGCTGACCCCAATCTACAATGCTGTAGTTAGTGCATTTGTCAAAGAGCTCGTTTACATACCAAGAGTGACACCTGTGGCACCTTCCGGAGCATGCTTCGACCCAAAGAAGATTGGTGTTACGCGGCTGGGTTGGGCTGTACCTGCCATTGATCTTGTTTTGAGACTTTACACTGGAGGGTGTTTGGTGCAAACTCAATGGTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

9.23

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	54 - 106	4.9e-10	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13270
fragaria_vesca	FvH4_4g22810
malus_domestica	MD13G1129400.v1.1
prunus_persica	Prupe.1G217000_v2.0.a1
pyrus_communis	pycom13g11240
rosa_chinensis	RchiOBHm_Chr4g0429041
rosa_laevigata	RLG00000007101
rosa_multiflora	Rmu_sc0008629.1_g000019
rosa_roxburghii	Rroxscaffold_5G00370690
rosa_rugosa	Rorug04G0232300
rosa_samantha	Rh4AG288300 Rh4BG294500 Rh4CG310000 Rh4DG291400
rosa_wichuraiana	Rw4G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	20
AfaI	GTAC	1 cut(s)	294
AluBI	AGCT	2 cut(s)	157, 202
AluI	AGCT	2 cut(s)	157, 202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	48, 310
AlwI	GGATC	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	48, 310
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	143
BseAI	TCCGGA	1 cut(s)	239
BseGI	GGATG	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	23, 240
BsmAI	GTCTC	2 cut(s)	48, 310
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	63, 138, 304
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	63, 138, 304
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	3 cut(s)	66, 141, 307
BstMAI	GTCTC	2 cut(s)	48, 310
BstMBI	GATC	3 cut(s)	63, 138, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	76, 246
CviJI	RGCY	5 cut(s)	22, 157, 202, 280, 290
CviKI_1	RGCY	5 cut(s)	22, 157, 202, 280, 290
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	3 cut(s)	65, 140, 306
DpnII	GATC	3 cut(s)	63, 138, 304
EaeI	YGGCCR	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	2 cut(s)	79, 249
FaiI	YATR	7 cut(s)	11, 77, 96, 118, 131, 212, 247
FatI	CATG	2 cut(s)	75, 245
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	23, 240
Hin1II	CATG	2 cut(s)	79, 249
HpaII	CCGG	2 cut(s)	23, 240
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	116, 188, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	79, 249
Kpn2I	TCCGGA	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	63, 138, 304
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	7 cut(s)	4, 36, 240, 253, 266, 309, 312
MaeIII	GTNAC	2 cut(s)	220, 271
MalI	GATC	3 cut(s)	65, 140, 306
MboI	GATC	3 cut(s)	63, 138, 304
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	204
MnlI	CCTC	2 cut(s)	77, 323
Mph1103I	ATGCAT	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	1 cut(s)	126
MspI	CCGG	2 cut(s)	23, 240
MspR9I	CCNGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	63, 138, 304
NlaIII	CATG	2 cut(s)	79, 249
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	63, 138, 304
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	7 cut(s)	9, 91, 159, 204, 229, 238, 298
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	249
SsiI	CCGC	1 cut(s)	277
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	252
TauI	GCSGC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.