Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016144

Physical Location & Seq

Genomic Coordinates Reverse (-)

13583549 .. 13586083

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGTCTTCTTCTTTCATCGAAGTGCAATGTTCTCTGCTACCTTCTTGCTCCTCAAGTCATCATCATGACAAAGCTCCCCCTATAAAAGCTGTAAACTTTGCTCAGATTCCATCATGGGTCTCTCTAAAATCCTCTGCTCCATTGTTGAATACCCAACAATTACAGACTGGGCAAGTCGAAAATGTTCACTTGGTTTCTTTATCGAAACAGGGAAAGATGAAAGAAGCACGAGAATTTCTACAGCAAATGAAGAAGGCTGGTGTGGCGGTTAGTTCTCAGTCGTATAGGTGTTTGCTTGAGAAGTGTGGATTGATGGGTTCGTTATCGGATGGCAGATTTGTTCACGAGTGGTTGCGAAGAACTGTGAAGAGTCCAGCAGAGTTTCTTGAGAATGATGCTCTTCGGATGTACTGTGATTGTGGGAGTTTGACGGATGCACAGCAGGTGTTCGATGAAATGCTTCACAGGGATTTGGTTTCTTGGGTTATAATTATATGCGCTTATGTGGAGAAGGGTTTTTTGAACAGAGCTGTTGGTCTGTTTTTGGATATGCTGGAGTCTGGGGTTAGGCCGAATTCGTCTATTTTTACTAGCTTGTTGAAGTCGTTGAATGAGTTTTCGCAGTTGGAGTTTGGGAAACAGATGCATTCTTATGTTATAAGAACTGGGAATGCTAGTGGTTCGGTTGAGACGGCGATTGCAAACATGTATGTCAAGTGTGGATGGTTAGATGGTGCTAAACTAGTGTTTGATAAGATGGGTGACAAGAAGAGTGTAGTAGCTTGGACTGGGTTGATGGTGGGGTATACTGAAGATGAGAAGCGGGGGGAGGTTTTAGAATTGTTTGCTGAGATGGTTAGGGAAAGCGTAGAGGTGGATGATTTTGTTTTTTCGATAGTTCTCAAGGCATGTGCTGGTTTGGAGTACTTGAATGCTGGAAGGCAGATCCATGGTTACAGTGTTAAACTTGGATTGGATTCTGAGGTCTCTGTAGGAACTCCTCTAGTGGACTTCTATGTCAAATGTGGAGAATTTGAATCTGCTCGGCGAGCATTTAAGAGGATAAATGAACCAAATGATGTTTCGTGGAGTGCTATAATCTCTGGCTATTGCCAGAACGGTGAATTTGAGGAGTGTCTCGAGATTTTTCAATCTTTAATTGGTAAAGGTGTTACTTTAAATCCATTCATATATACAAGCATTTTTCAAGCATGCTCTGCAATTGCAGACATAAATTTGGGAGCTCAAGTTCATGCAGAAGCAATAAAAAGAGGGTTTGTCGCATTCTTGTATGGAGCAAGTGCAATGATTACGATGTACTCAAAATGTGGCAGATTGGACTATGCCTATCAAGCATTTGAATTGATAGATAAACCTGATACCGTGGCCTGGACTGCTATAATTTGTGGCTATGCATATCATGGCAATGCCTCTGAAGCTCTTCGGCTTTTCAGTAGAATGCAGAACTCTGGCATAAAGCCAAATTCAGTTACATTTGTAGCAGTTCTAACTGCTTGCAGCCATTCAGGTTTGGTAACAGAGGCCAAGCAGTATTTGGATTCAATGAGTAGTGTATATAATGTGGAACCAGCCATAGATCATTACGATTGTATGATAGATGTGTACGCTCGTGCTGGACTACTACAGGAGGCACTTGAACTGATAAAGACTATGCCATTTGAGCCCGATACAATGAGCTGGAAAAGCTTATTGGGTGGATGTTGGATAAATCGAAATCTTGAGCTCGGAAAGTTTGCAGCTGAAAACCTCCTCCAGATGGACCCAGAGGACACTGCTAGTTACATAATCATGTTCAACTTGTATGCATCATCGGGAAAATGGGAAGAAGCCGCCCGTTTTCGAAAAATGATGGCTGAAAAAAACTTGAGGAAAGAAATAGGTTGCAGCTGGATCACTGTCCAGGGCAAAACACACCGGTTTATAGTTGGCGATCAGCACCATTCTCAAATAGACCAGATATACTCAAAGCTAAATGAGCTAAGCATTTCTTTCAAGGATGCAGAAGATTCACTTCTAACTGAGGAGGATGTACTCTCTGGTTTTCCTGAAAGGAAAGAACAGCTTCTTGACCATAGTGAGAGACTAGCTATAGCATTTGGCCTCATTTCCACACCAAGTAATGCCTCTATTGTGGTCTTTAAGAACATCAGGGCCTGCAAAGACTGTCATGAGTTTGCAAAGCATGTTTCCATGGTGACAAGGCGTGTAATTATTGTGAGAGACTCCAACAGATTCCATCACTTTAAGTCGGGCGAGTACAGGTCACTTTCTGGTTGCTGCATTAAGATGAAAGCTGCAAGTACACGAATGACGAACCAGAGGGTGCCAGAGAACCCTGTAGTGCAAAAGATCAGTGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

795

Amino Acids

88.8

Weight (kDa)

6.17

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	157 - 203	1e-06	PPR repeat family
PPR_2	PF13041	258 - 305	3.2e-07	PPR repeat family
PPR_2	PF13041	358 - 405	3.8e-08	PPR repeat family
PPR	PF01535	361 - 391	4.4e-08	PPR repeat
PPR_3	PF13812	458 - 506	5.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	459 - 507	3.5e-13	PPR repeat family
PPR	PF01535	462 - 492	2.7e-06	PPR repeat
E_motif	PF20431	579 - 638	5.5e-16	E motif
DYW_deaminase	PF14432	690 - 759	3.5e-25	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13270
fragaria_vesca	FvH4_4g22810
malus_domestica	MD13G1129400.v1.1
prunus_persica	Prupe.1G217000_v2.0.a1
pyrus_communis	pycom13g11240
rosa_chinensis	RchiOBHm_Chr4g0429041
rosa_laevigata	RLG00000007101
rosa_multiflora	Rmu_sc0008629.1_g000019
rosa_roxburghii	Rroxscaffold_5G00370690
rosa_rugosa	Rorug04G0232300
rosa_samantha	Rh4AG288300 Rh4BG294500 Rh4CG310000 Rh4DG291400
rosa_wichuraiana	Rw4G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	488, 659
AarI	CACCTGC	1 cut(s)	433
AasI	GACNNNNNNGTC	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	2344
AccI	GTMKAC	1 cut(s)	806
AciI	CCGC	3 cut(s)	266, 823, 1851
AclWI	GGATC	2 cut(s)	940, 1919
AcsI	RAATTY	6 cut(s)	233, 574, 1031, 1124, 1234, 1483
AcuI	CTGAAG	2 cut(s)	831, 1455
AfaI	GTAC	7 cut(s)	410, 926, 1319, 1625, 2052, 2279, 2323
AfiI	CCNNNNNNNGG	2 cut(s)	1389, 1777
AflIII	ACRYGT	1 cut(s)	705
AgeI	ACCGGT	1 cut(s)	1935
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	1388, 1920
AjuI	GAANNNNNNNTTGG	4 cut(s)	1066, 1098, 1694, 1726
AloI	GAACNNNNNNTCC	2 cut(s)	1233, 1265
Alw21I	GWGCWC	2 cut(s)	1246, 1746
Alw26I	GTCTC	6 cut(s)	124, 683, 991, 1142, 2095, 2235
AlwI	GGATC	2 cut(s)	940, 1919
AlwNI	CAGNNNCTG	1 cut(s)	2175
Ama87I	CYCGRG	1 cut(s)	1139
AoxI	GGCC	5 cut(s)	569, 1386, 1542, 2119, 2172
ApeKI	GCWGC	5 cut(s)	1518, 1757, 1905, 2298, 2315
ApoI	RAATTY	6 cut(s)	233, 574, 1031, 1124, 1234, 1483
AsiGI	ACCGGT	1 cut(s)	1935
Asp700I	GAANNNNTTC	4 cut(s)	183, 459, 1440, 2082
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	2 cut(s)	1780, 2172
AsuHPI	GGTGA	3 cut(s)	773, 1133, 2227
AsuII	TTCGAA	1 cut(s)	1861
AvaI	CYCGRG	1 cut(s)	1139
AvaII	GGWCC	1 cut(s)	1780
BanI	GGYRCC	1 cut(s)	2344
BanII	GRGCYC	3 cut(s)	1246, 1686, 1746
BauI	CACGAG	3 cut(s)	228, 344, 1629
Bbv12I	GWGCWC	2 cut(s)	1246, 1746
BbvI	GCAGC	5 cut(s)	1530, 1769, 1917, 2285, 2302
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	1390, 1922
BcoDI	GTCTC	6 cut(s)	124, 683, 991, 1142, 2095, 2235
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	6 cut(s)	591, 675, 743, 1004, 1797, 2105
BfmI	CTRYAG	5 cut(s)	239, 990, 1643, 2109, 2358
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	6 cut(s)	1519, 1758, 1851, 1906, 2299, 2316
BlpI	GCTNAGC	1 cut(s)	2000
BlsI	GCNGC	6 cut(s)	1520, 1759, 1852, 1907, 2300, 2317
BmcAI	AGTACT	1 cut(s)	926
Bme1390I	CCNGG	2 cut(s)	1390, 1922
Bme18I	GGWCC	1 cut(s)	1780
BmeT110I	CYCGRG	1 cut(s)	1139
BmgT120I	GGNCC	2 cut(s)	1780, 2172
BmiI	GGNNCC	3 cut(s)	1587, 1782, 2346
BmrFI	CCNGG	2 cut(s)	1390, 1922
BmrI	ACTGGG	3 cut(s)	177, 675, 798
BmsI	GCATC	5 cut(s)	385, 424, 633, 1835, 2008
BmuI	ACTGGG	3 cut(s)	177, 675, 798
BpmI	CTGGAG	2 cut(s)	575, 1757
Bpu1102I	GCTNAGC	1 cut(s)	2000
Bpu14I	TTCGAA	1 cut(s)	1861
BpuEI	CTTGAG	7 cut(s)	37, 317, 407, 887, 1230, 1760, 1906
BsaI	GGTCTC	2 cut(s)	124, 991
BsaJI	CCNNGG	4 cut(s)	949, 1383, 1921, 2211
BsaWI	WCCGGW	1 cut(s)	1935
BsaXI	ACNNNNNCTCC	2 cut(s)	1233, 1263
Bsc4I	CCNNNNNNNGG	2 cut(s)	1389, 1777
Bse118I	RCCGGY	1 cut(s)	1935
Bse1I	ACTGG	3 cut(s)	172, 670, 793
Bse3DI	GCAATG	3 cut(s)	32, 1311, 1432
BseBI	CCWGG	2 cut(s)	1390, 1922
BseDI	CCNNGG	4 cut(s)	949, 1383, 1921, 2211
BseGI	GGATG	8 cut(s)	334, 411, 439, 728, 883, 1724, 2023, 2053
BseLI	CCNNNNNNNGG	2 cut(s)	1389, 1777
BseMI	GCAATG	3 cut(s)	32, 1311, 1432
BseMII	CTCAG	5 cut(s)	116, 290, 840, 972, 2031
BseNI	ACTGG	3 cut(s)	172, 670, 793
BseRI	GAGGAG	5 cut(s)	40, 990, 1145, 1760, 2057
BseXI	GCAGC	5 cut(s)	1530, 1769, 1917, 2285, 2302
BshFI	GGCC	5 cut(s)	571, 1388, 1544, 2121, 2174
BshNI	GGYRCC	1 cut(s)	2344
BshTI	ACCGGT	1 cut(s)	1935
BsiHKAI	GWGCWC	2 cut(s)	1246, 1746
BsiHKCI	CYCGRG	1 cut(s)	1139
BsiSI	CCGG	1 cut(s)	1936
BslI	CCNNNNNNNGG	2 cut(s)	1389, 1777
BsmAI	GTCTC	6 cut(s)	124, 683, 991, 1142, 2095, 2235
BsmBI	CGTCTC	1 cut(s)	683
BsmI	GAATGC	5 cut(s)	646, 676, 937, 1283, 1464
BsnI	GGCC	5 cut(s)	571, 1388, 1544, 2121, 2174
Bso31I	GGTCTC	2 cut(s)	124, 991
BsoBI	CYCGRG	1 cut(s)	1139
Bsp119I	TTCGAA	1 cut(s)	1861
Bsp1286I	GDGCHC	3 cut(s)	1246, 1686, 1746
Bsp143I	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
Bsp1720I	GCTNAGC	1 cut(s)	2000
Bsp19I	CCATGG	2 cut(s)	949, 2211
BspACI	CCGC	3 cut(s)	266, 823, 1851
BspANI	GGCC	5 cut(s)	571, 1388, 1544, 2121, 2174
BspCNI	CTCAG	5 cut(s)	115, 289, 841, 973, 2032
BspHI	TCATGA	2 cut(s)	64, 2188
BspLI	GGNNCC	3 cut(s)	1587, 1782, 2346
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	940, 1919
BspQI	GCTCTTC	2 cut(s)	405, 1446
BspT104I	TTCGAA	1 cut(s)	1861
BspT107I	GGYRCC	1 cut(s)	2344
BspTNI	GGTCTC	2 cut(s)	124, 991
BsrDI	GCAATG	3 cut(s)	32, 1311, 1432
BsrFI	RCCGGY	1 cut(s)	1935
BsrI	ACTGG	3 cut(s)	172, 670, 793
BssAI	RCCGGY	1 cut(s)	1935
BssECI	CCNNGG	4 cut(s)	949, 1383, 1921, 2211
BssMI	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
BssNAI	GTATAC	1 cut(s)	807
BssSI	CACGAG	3 cut(s)	228, 344, 1629
BssT1I	CCWWGG	2 cut(s)	949, 2211
Bst1107I	GTATAC	1 cut(s)	807
Bst2BI	CACGAG	3 cut(s)	228, 344, 1629
Bst2UI	CCWGG	2 cut(s)	1390, 1922
Bst4CI	ACNGT	7 cut(s)	364, 413, 959, 1121, 1384, 1918, 2186
Bst6I	CTCTTC	4 cut(s)	362, 405, 764, 1446
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstBI	TTCGAA	1 cut(s)	1861
BstC8I	GCNNGC	4 cut(s)	1050, 1213, 1516, 2176
BstDEI	CTNAG	6 cut(s)	102, 276, 849, 981, 2000, 2040
BstDSI	CCRYGG	3 cut(s)	949, 1383, 2211
BstF5I	GGATG	8 cut(s)	334, 411, 439, 728, 883, 1724, 2023, 2053
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	5 cut(s)	948, 1600, 1914, 1954, 2373
BstMAI	GTCTC	6 cut(s)	124, 683, 991, 1142, 2095, 2235
BstMBI	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
BstMWI	GCNNNNNNNGC	9 cut(s)	263, 1049, 1217, 1352, 1394, 1436, 1681, 1704, 1996
BstNI	CCWGG	2 cut(s)	1390, 1922
BstNSI	RCATGY	4 cut(s)	709, 912, 1215, 2207
BstSCI	CCNGG	2 cut(s)	1388, 1920
BstSFI	CTRYAG	5 cut(s)	239, 990, 1643, 2109, 2358
BstV1I	GCAGC	5 cut(s)	1530, 1769, 1917, 2285, 2302
BstX2I	RGATCY	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	945
BstZ17I	GTATAC	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	571, 1388, 1544, 2121, 2174
BtgI	CCRYGG	3 cut(s)	949, 1383, 2211
BtsCI	GGATG	8 cut(s)	334, 411, 439, 728, 883, 1724, 2023, 2053
BtsI	GCAGTG	1 cut(s)	1791
BtsIMutI	CAGTG	4 cut(s)	964, 1791, 1914, 2380
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	4 cut(s)	1050, 1213, 1516, 2176
CaiI	CAGNNNCTG	1 cut(s)	2175
CciI	TCATGA	2 cut(s)	64, 2188
CfoI	GCGC	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	1935
Cfr13I	GGNCC	2 cut(s)	1780, 2172
Csp6I	GTAC	7 cut(s)	409, 925, 1318, 1624, 2051, 2278, 2322
CspAI	ACCGGT	1 cut(s)	1935
CviQI	GTAC	7 cut(s)	409, 925, 1318, 1624, 2051, 2278, 2322
DdeI	CTNAG	6 cut(s)	102, 276, 849, 981, 2000, 2040
DpnI	GATC	5 cut(s)	947, 1599, 1913, 1953, 2372
DpnII	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
DraI	TTTAAA	1 cut(s)	1179
DrdI	GACNNNNNNGTC	1 cut(s)	1016
DseDI	GACNNNNNNGTC	1 cut(s)	1016
Eam1104I	CTCTTC	4 cut(s)	362, 405, 764, 1446
EarI	CTCTTC	4 cut(s)	362, 405, 764, 1446
Ecl136II	GAGCTC	2 cut(s)	1244, 1744
Eco130I	CCWWGG	2 cut(s)	949, 2211
Eco24I	GRGCYC	3 cut(s)	1246, 1686, 1746
Eco31I	GGTCTC	2 cut(s)	124, 991
Eco47I	GGWCC	1 cut(s)	1780
Eco53kI	GAGCTC	2 cut(s)	1244, 1744
Eco57I	CTGAAG	2 cut(s)	831, 1455
Eco88I	CYCGRG	1 cut(s)	1139
EcoICRI	GAGCTC	2 cut(s)	1244, 1744
EcoO109I	RGGNCCY	1 cut(s)	2172
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	1388, 1920
EcoT14I	CCWWGG	2 cut(s)	949, 2211
EcoT22I	ATGCAT	3 cut(s)	648, 1417, 1828
EcoT38I	GRGCYC	3 cut(s)	1246, 1686, 1746
ErhI	CCWWGG	2 cut(s)	949, 2211
Esp3I	CGTCTC	1 cut(s)	683
FalI	AAGNNNNNCTT	6 cut(s)	1993, 2025, 2016, 2048, 2067, 2099
FauI	CCCGC	1 cut(s)	816
FblI	GTMKAC	1 cut(s)	806
Fnu4HI	GCNGC	6 cut(s)	1519, 1758, 1851, 1906, 2299, 2316
FokI	GGATG	8 cut(s)	341, 418, 446, 735, 890, 1731, 2030, 2060
FriOI	GRGCYC	3 cut(s)	1246, 1686, 1746
Fsp4HI	GCNGC	6 cut(s)	1519, 1758, 1851, 1906, 2299, 2316
FspBI	CTAG	6 cut(s)	591, 675, 743, 1004, 1797, 2105
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	6 cut(s)	1519, 1758, 1851, 1906, 2299, 2316
GsuI	CTGGAG	2 cut(s)	575, 1757
HaeIII	GGCC	5 cut(s)	571, 1388, 1544, 2121, 2174
HapII	CCGG	1 cut(s)	1936
HhaI	GCGC	1 cut(s)	500
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	1705
HinfI	GANTC	9 cut(s)	106, 370, 557, 977, 1037, 1559, 2027, 2243, 2253
HpaII	CCGG	1 cut(s)	1936
HphI	GGTGA	3 cut(s)	773, 1133, 2227
Hpy166II	GTNNAC	7 cut(s)	94, 187, 343, 807, 1009, 1624, 2324
Hpy188I	TCNGA	7 cut(s)	105, 328, 405, 982, 1435, 1748, 2384
Hpy8I	GTNNAC	7 cut(s)	94, 187, 343, 807, 1009, 1624, 2324
HpyAV	CCTTC	4 cut(s)	51, 247, 505, 933
HpyCH4III	ACNGT	7 cut(s)	364, 413, 959, 1121, 1384, 1918, 2186
HpyF10VI	GCNNNNNNNGC	9 cut(s)	263, 1049, 1217, 1352, 1394, 1436, 1681, 1704, 1996
HpyF3I	CTNAG	6 cut(s)	102, 276, 849, 981, 2000, 2040
HspAI	GCGC	1 cut(s)	498
Kzo9I	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
LguI	GCTCTTC	2 cut(s)	405, 1446
LmnI	GCTCC	5 cut(s)	53, 79, 142, 1241, 1295
Lsp1109I	GCAGC	5 cut(s)	1530, 1769, 1917, 2285, 2302
LweI	GCATC	5 cut(s)	385, 424, 633, 1835, 2008
MaeI	CTAG	6 cut(s)	591, 675, 743, 1004, 1797, 2105
MaeIII	GTNAC	8 cut(s)	761, 953, 1171, 1489, 1534, 1799, 2215, 2283
MalI	GATC	5 cut(s)	947, 1599, 1913, 1953, 2372
MboI	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
MboII	GAAGA	9 cut(s)	262, 369, 379, 392, 781, 824, 1433, 1856, 2036
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	1 cut(s)	945
MhlI	GDGCHC	3 cut(s)	1246, 1686, 1746
MlyI	GAGTC	3 cut(s)	379, 566, 2237
MmeI	TCCRAC	3 cut(s)	606, 1703, 2271
Mph1103I	ATGCAT	3 cut(s)	648, 1417, 1828
MroXI	GAANNNNTTC	4 cut(s)	183, 459, 1440, 2082
MseI	TTAA	7 cut(s)	963, 1056, 1157, 1178, 2160, 2265, 2304
MslI	CAYNNNNRTG	6 cut(s)	20, 63, 651, 1425, 1808, 2306
MspA1I	CMGCKG	2 cut(s)	1760, 1908
MspI	CCGG	1 cut(s)	1936
MspR9I	CCNGG	2 cut(s)	1390, 1922
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	5 cut(s)	646, 676, 937, 1283, 1464
MvaI	CCWGG	2 cut(s)	1390, 1922
MwoI	GCNNNNNNNGC	9 cut(s)	263, 1049, 1217, 1352, 1394, 1436, 1681, 1704, 1996
NcoI	CCATGG	2 cut(s)	949, 2211
NdeII	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
NlaIV	GGNNCC	3 cut(s)	1587, 1782, 2346
NmeAIII	GCCGAG	1 cut(s)	1024
NmuCI	GTSAC	3 cut(s)	761, 2215, 2283
NsiI	ATGCAT	3 cut(s)	648, 1417, 1828
NspI	RCATGY	4 cut(s)	709, 912, 1215, 2207
NspV	TTCGAA	1 cut(s)	1861
PaeI	GCATGC	1 cut(s)	1215
PaeR7I	CTCGAG	1 cut(s)	1139
PagI	TCATGA	2 cut(s)	64, 2188
PaqCI	CACCTGC	1 cut(s)	433
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	2 cut(s)	405, 1446
PctI	GAATGC	5 cut(s)	646, 676, 937, 1283, 1464
PdmI	GAANNNNTTC	4 cut(s)	183, 459, 1440, 2082
PfeI	GAWTC	6 cut(s)	106, 977, 1037, 1559, 2027, 2253
PinAI	ACCGGT	1 cut(s)	1935
PkrI	GCNGC	6 cut(s)	1520, 1759, 1852, 1907, 2300, 2317
PleI	GAGTC	3 cut(s)	378, 565, 2237
PpsI	GAGTC	3 cut(s)	378, 565, 2237
PscI	ACATGT	1 cut(s)	705
PsiI	TTATAA	2 cut(s)	488, 659
Psp124BI	GAGCTC	2 cut(s)	1246, 1746
Psp6I	CCWGG	2 cut(s)	1388, 1920
PspGI	CCWGG	2 cut(s)	1388, 1920
PspN4I	GGNNCC	3 cut(s)	1587, 1782, 2346
PspPI	GGNCC	2 cut(s)	1780, 2172
PstNI	CAGNNNCTG	1 cut(s)	2175
PsuI	RGATCY	1 cut(s)	945
PvuII	CAGCTG	2 cut(s)	1760, 1908
RsaI	GTAC	7 cut(s)	410, 926, 1319, 1625, 2052, 2279, 2323
RsaNI	GTAC	7 cut(s)	409, 925, 1318, 1624, 2051, 2278, 2322
RseI	CAYNNNNRTG	6 cut(s)	20, 63, 651, 1425, 1808, 2306
SacI	GAGCTC	2 cut(s)	1246, 1746
SapI	GCTCTTC	2 cut(s)	405, 1446
SaqAI	TTAA	7 cut(s)	963, 1056, 1157, 1178, 2160, 2265, 2304
SatI	GCNGC	6 cut(s)	1519, 1758, 1851, 1906, 2299, 2316
Sau3AI	GATC	5 cut(s)	945, 1597, 1911, 1951, 2370
Sau96I	GGNCC	2 cut(s)	1780, 2172
ScaI	AGTACT	1 cut(s)	926
SchI	GAGTC	3 cut(s)	379, 566, 2237
ScrFI	CCNGG	2 cut(s)	1390, 1922
SduI	GDGCHC	3 cut(s)	1246, 1686, 1746
SfaNI	GCATC	5 cut(s)	385, 424, 633, 1835, 2008
SfcI	CTRYAG	5 cut(s)	239, 990, 1643, 2109, 2358
Sfr274I	CTCGAG	1 cut(s)	1139
SfuI	TTCGAA	1 cut(s)	1861
SinI	GGWCC	1 cut(s)	1780
SlaI	CTCGAG	1 cut(s)	1139
SmiMI	CAYNNNNRTG	6 cut(s)	20, 63, 651, 1425, 1808, 2306
SmlI	CTYRAG	8 cut(s)	52, 296, 386, 902, 1139, 1245, 1739, 1885
SmoI	CTYRAG	8 cut(s)	52, 296, 386, 902, 1139, 1245, 1739, 1885
SpeI	ACTAGT	1 cut(s)	742
SphI	GCATGC	1 cut(s)	1215
SsiI	CCGC	3 cut(s)	266, 823, 1851
SspMI	CTAG	6 cut(s)	591, 675, 743, 1004, 1797, 2105
SstI	GAGCTC	2 cut(s)	1246, 1746
StyD4I	CCNGG	2 cut(s)	1388, 1920
StyI	CCWWGG	2 cut(s)	949, 2211
TaaI	ACNGT	7 cut(s)	364, 413, 959, 1121, 1384, 1918, 2186
TaqI	TCGA	8 cut(s)	18, 177, 203, 450, 893, 1140, 1732, 1861
TatI	WGTACW	6 cut(s)	408, 924, 1317, 2050, 2277, 2321
TauI	GCSGC	1 cut(s)	1853
TfiI	GAWTC	6 cut(s)	106, 977, 1037, 1559, 2027, 2253
Tru1I	TTAA	7 cut(s)	963, 1056, 1157, 1178, 2160, 2265, 2304
Tru9I	TTAA	7 cut(s)	963, 1056, 1157, 1178, 2160, 2265, 2304
TscAI	CASTG	4 cut(s)	964, 1798, 1921, 2380
TseFI	GTSAC	3 cut(s)	761, 2215, 2283
TseI	GCWGC	5 cut(s)	1518, 1757, 1905, 2298, 2315
Tsp45I	GTSAC	3 cut(s)	761, 2215, 2283
TspDTI	ATGAA	8 cut(s)	4, 233, 263, 468, 1083, 1177, 1241, 2324
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	4 cut(s)	964, 1798, 1921, 2380
VpaK11BI	GGWCC	1 cut(s)	1780
XapI	RAATTY	6 cut(s)	233, 574, 1031, 1124, 1234, 1483
XceI	RCATGY	4 cut(s)	709, 912, 1215, 2207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1552
XhoI	CTCGAG	1 cut(s)	1139
XmiI	GTMKAC	1 cut(s)	806
XmnI	GAANNNNTTC	4 cut(s)	183, 459, 1440, 2082
XspI	CTAG	6 cut(s)	591, 675, 743, 1004, 1797, 2105
ZrmI	AGTACT	1 cut(s)	926
Zsp2I	ATGCAT	3 cut(s)	648, 1417, 1828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.