Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016144

Physical Location & Seq

Genomic Coordinates Forward (+)

57158315 .. 57161259

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGTCTTCTTCTTCTTCTTCTTTCATCACAGTGCAATGTTCTCTGCTACCTTCATGCTCCTCAAGTCATCATCATGACAAAGCTCCCCCTATAAAAGCTGTAAACTTTGCTCAGATTCCATCATGGGTCTCTCTAAAATCCTCTGCTCCATTGTTGAACACCCAACAATTACAGACTGGGCAAGTCGAAAATGTTCACTTGGTTTCTTTATCGAAACAGGGGAAGATGAAAGAAGCACGAGAATTTCTACAGCAAATGAAGAAGGCTGGTGTGGCGGTTAGTGCTCAGTCGTACAGGTGTTTGTTTGAGAAGTGTGGATTGATGGGTTCGTTATCGGATGGCAGATTTGTTCACGAGTGGTTGCGAACAACTGTGAAGACTCCAGCCGAGTTTCTTGAGAATGATGCTGTTCAGATGTACTGCGATTGTGGGAGTTTAAGGGATGCACAGAAGGTGTTCGATGAAATGCTTCACAGGGATTTAGTTTCTTGGGTTATAATCATATCCGCTTATGTGGAGAAGGGTGTTTTGAACAAAGCTGTTGGTCTGTTTTTGGATATGCTGGAGTCTGGGGTTAGGCCGAATTCGTCTATTTTTACTAGCTTGCTGAAGTCGTTGAATGAGTTTTCGCATTTGGAGTTTGGGAAACAGATGCATTCTTGTGTTATAAGAACTGGGAATGCTAGTGGTTCGGTTGAGACGGCGATTGCAAACATGTATGTGAAGTGTGGATGGTTAGATGGTGCTAAACTAGTGTTTGATAAGATGGGTGACAAGAAGAGTGTGGTAGCTTGGACTGGGTTGATGGTGGGGTATACTGAAGATGAGAAGCTGGGGGAGGTTTTAGAATTGTTTGCTGAGATGGTTAGGGGAAGTGTAGAGGTGGATGATTTTGTTTTTTCGATAGTTCTCAAGGCATGTGCTGGTTTGGAGTACTTGAATGCTGGAAGGCAGATCCATGGTTGCAGTGTTAAACTTGGATTGGATTCTGAGGTCTCTGTAGGAACTCCTCTAGTGGACTTCTATGTCAAATGTGGAGAATTTGAATCTGCTCGGCGAGCATTTAAGAGGATAAATGAACCAAATGATGTTTCGTGGAGTGCTCTAATCTCTGGCTATTGCCAGAACGGTGAATTTGAGGAGTGTGTCGAGATTTTTCAATCTTTAATTGGTAAAGGTGTTACTTTAAATCCATTCATATATACAAGCGTTTTTCAAGCATGCTCTGCAATTGCAGACATAAATTTGGGAGCTCAAGTTCATGCGGACGCAATAAAAAGAGGGTTTGTCGCATTCTTGTATGGAGCAAGTGCAATGATTACGATGTACTCAAAATGTGGCAGATTGGACTATGCCTATCAAGCATTTGAATCAATAGATAAACCTGATACTGTGGCCTGGACTGCTATAATTTGTGGCTATGCATATCATGGCAATGCCTCTGAAGCTCTTCGGCTTTTCAGTAGAATGCAGAACTCTGGCATAAAGCCAAATTCAGTTACATTTGTAGCAGTTCTAACTGCTTGCAGCCATTCAGGTTTGGTGACAGAGGCGAAGCAGTATTTGGATTCAATGAGTAGTGTATATAATGTGGAACCAACCATTGATCATTATGATTGTATGATAGATGTGTACTCTCGTGCTGGACTACTACAGGAGGCACTTGAACTGATAAAGAGTATGCCATTTGAGCCCGATGCAATGAGCTGGAAAAGTTTATTAGGTGGATGTTGGATACATCGGAATCTTGATCTTGGAAAGTTTGCAGCTGAAAACCTCCTCCAGATGGACCCAGAGGACACTGCTAGTTACATAATCATGTTCAACTTGTATGCATCATTGGGAAAATGGGAAGAAGCCGCCCATTTTCGAAAAATGATGGCTGAAAAAAACTTGCGGAAAGAAATAGGTTGCAGCTGGATCACTGTCCAGGGCAAAACACACCGGTTTATAGTTGGCGATAAGCACCATTCTCAAATGGACCAGATATACTCAAAGCTAAATGAGCTAAGCATCTCTTTCAAGGATGCAGAAGATTCACTTCTAACTGAGGAGGATGTACTCTCTGGTTTTCCTGAAAGGAAAGAACAGCTTCTTGACCATAGTGAGAGACTAGCTATAGCATTTGGCCTCATTTCCACACCAAGTAATGCCTCTATTGTGATCTTTAAGAACATCAGGGCCTGCAAAGACTGTCATGAGTTTGCAAAGCATGTTTCCATGGTGACAAGGCGTGTAATTATTGTGAGAGACTCCAACAGATTCCATCACTTCAAGTCGGGCGAGTGTTCTTGCAGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

769

Amino Acids

85.69

Weight (kDa)

6.05

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 206	5.3e-08	PPR repeat family
PPR_2	PF13041	261 - 308	8.4e-08	PPR repeat family
PPR_2	PF13041	361 - 408	4.8e-08	PPR repeat family
PPR	PF01535	364 - 394	2e-08	PPR repeat
PPR_3	PF13812	461 - 509	5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	462 - 510	3.4e-13	PPR repeat family
TPR_24	PF23276	463 - 560	9.2e-06	Fungal tetratrico peptide repeats
PPR	PF01535	465 - 495	2.6e-06	PPR repeat
E_motif	PF20431	580 - 641	5.8e-15	E motif
DYW_deaminase	PF14432	693 - 769	3.6e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13270
fragaria_vesca	FvH4_4g22810
malus_domestica	MD13G1129400.v1.1
prunus_persica	Prupe.1G217000_v2.0.a1
pyrus_communis	pycom13g11240
rosa_chinensis	RchiOBHm_Chr4g0429041
rosa_laevigata	RLG00000007101
rosa_multiflora	Rmu_sc0008629.1_g000019
rosa_roxburghii	Rroxscaffold_5G00370690
rosa_rugosa	Rorug04G0232300
rosa_samantha	Rh4AG288300 Rh4BG294500 Rh4CG310000 Rh4DG291400
rosa_wichuraiana	Rw4G024990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	497, 668
AasI	GACNNNNNNGTC	1 cut(s)	1025
AccI	GTMKAC	1 cut(s)	815
AciI	CCGC	5 cut(s)	275, 507, 1265, 1860, 1897
AclWI	GGATC	2 cut(s)	949, 1928
AcsI	RAATTY	6 cut(s)	242, 583, 1040, 1133, 1243, 1492
AcuI	CTGAAG	3 cut(s)	629, 840, 1464
AfaI	GTAC	6 cut(s)	293, 419, 935, 1328, 1634, 2061
AfiI	CCNNNNNNNGG	1 cut(s)	1786
AflIII	ACRYGT	1 cut(s)	714
AgeI	ACCGGT	1 cut(s)	1944
AhlI	ACTAGT	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	1397, 1929
AjuI	GAANNNNNNNTTGG	4 cut(s)	1075, 1107, 1547, 1579
AloI	GAACNNNNNNTCC	2 cut(s)	1242, 1274
Alw21I	GWGCWC	3 cut(s)	286, 1105, 1255
Alw26I	GTCTC	5 cut(s)	133, 692, 1000, 2104, 2244
AlwI	GGATC	2 cut(s)	949, 1928
AlwNI	CAGNNNCTG	1 cut(s)	2184
AoxI	GGCC	4 cut(s)	578, 1395, 2128, 2181
ApeKI	GCWGC	3 cut(s)	1527, 1766, 1914
ApoI	RAATTY	6 cut(s)	242, 583, 1040, 1133, 1243, 1492
AsiGI	ACCGGT	1 cut(s)	1944
Asp700I	GAANNNNTTC	5 cut(s)	192, 455, 468, 1449, 2091
AspS9I	GGNCC	3 cut(s)	1789, 1981, 2181
AsuHPI	GGTGA	4 cut(s)	782, 1142, 1555, 2236
AsuII	TTCGAA	1 cut(s)	1870
AvaII	GGWCC	2 cut(s)	1789, 1981
BanII	GRGCYC	2 cut(s)	1255, 1695
BauI	CACGAG	3 cut(s)	237, 353, 1638
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	3 cut(s)	286, 1105, 1255
BbvI	GCAGC	3 cut(s)	1539, 1778, 1926
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	2 cut(s)	1399, 1931
BciVI	GTATCC	1 cut(s)	1728
BclI	TGATCA	1 cut(s)	1606
BcoDI	GTCTC	5 cut(s)	133, 692, 1000, 2104, 2244
BcuI	ACTAGT	1 cut(s)	751
BfaI	CTAG	6 cut(s)	600, 684, 752, 1013, 1806, 2114
BfmI	CTRYAG	4 cut(s)	248, 999, 1652, 2118
BfuI	GTATCC	1 cut(s)	1728
BisI	GCNGC	4 cut(s)	1528, 1767, 1860, 1915
BlpI	GCTNAGC	1 cut(s)	2009
BlsI	GCNGC	4 cut(s)	1529, 1768, 1861, 1916
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	1399, 1931
Bme18I	GGWCC	2 cut(s)	1789, 1981
BmgT120I	GGNCC	3 cut(s)	1789, 1981, 2181
BmiI	GGNNCC	2 cut(s)	1596, 1791
BmrFI	CCNGG	2 cut(s)	1399, 1931
BmrI	ACTGGG	3 cut(s)	186, 684, 807
BmsI	GCATC	7 cut(s)	394, 433, 642, 1687, 1844, 2017, 2022
BmuI	ACTGGG	3 cut(s)	186, 684, 807
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	3 cut(s)	366, 584, 1766
Bpu1102I	GCTNAGC	1 cut(s)	2009
Bpu14I	TTCGAA	1 cut(s)	1870
BpuEI	CTTGAG	4 cut(s)	46, 416, 896, 1239
BsaI	GGTCTC	2 cut(s)	133, 1000
BsaJI	CCNNGG	3 cut(s)	958, 1930, 2220
BsaWI	WCCGGW	1 cut(s)	1944
BsaXI	ACNNNNNCTCC	2 cut(s)	1242, 1272
Bsc4I	CCNNNNNNNGG	1 cut(s)	1786
Bse118I	RCCGGY	1 cut(s)	1944
Bse1I	ACTGG	3 cut(s)	181, 679, 802
Bse3DI	GCAATG	4 cut(s)	41, 1320, 1441, 1707
BseBI	CCWGG	2 cut(s)	1399, 1931
BseDI	CCNNGG	3 cut(s)	958, 1930, 2220
BseGI	GGATG	7 cut(s)	343, 448, 737, 892, 1733, 2032, 2062
BseLI	CCNNNNNNNGG	1 cut(s)	1786
BseMI	GCAATG	4 cut(s)	41, 1320, 1441, 1707
BseMII	CTCAG	5 cut(s)	125, 299, 849, 981, 2040
BseNI	ACTGG	3 cut(s)	181, 679, 802
BseRI	GAGGAG	5 cut(s)	49, 999, 1154, 1769, 2066
BseXI	GCAGC	3 cut(s)	1539, 1778, 1926
BseYI	CCCAGC	1 cut(s)	832
BshFI	GGCC	4 cut(s)	580, 1397, 2130, 2183
BshTI	ACCGGT	1 cut(s)	1944
BsiHKAI	GWGCWC	3 cut(s)	286, 1105, 1255
BsiSI	CCGG	1 cut(s)	1945
BslI	CCNNNNNNNGG	1 cut(s)	1786
BsmAI	GTCTC	5 cut(s)	133, 692, 1000, 2104, 2244
BsmBI	CGTCTC	1 cut(s)	692
BsmI	GAATGC	5 cut(s)	655, 685, 946, 1292, 1473
BsnI	GGCC	4 cut(s)	580, 1397, 2130, 2183
Bso31I	GGTCTC	2 cut(s)	133, 1000
Bsp119I	TTCGAA	1 cut(s)	1870
Bsp1286I	GDGCHC	4 cut(s)	286, 1105, 1255, 1695
Bsp143I	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
Bsp1720I	GCTNAGC	1 cut(s)	2009
Bsp19I	CCATGG	2 cut(s)	958, 2220
BspACI	CCGC	5 cut(s)	275, 507, 1265, 1860, 1897
BspANI	GGCC	4 cut(s)	580, 1397, 2130, 2183
BspCNI	CTCAG	5 cut(s)	124, 298, 850, 982, 2041
BspHI	TCATGA	2 cut(s)	73, 2197
BspLI	GGNNCC	2 cut(s)	1596, 1791
BspPI	GGATC	2 cut(s)	949, 1928
BspQI	GCTCTTC	1 cut(s)	1455
BspT104I	TTCGAA	1 cut(s)	1870
BspTNI	GGTCTC	2 cut(s)	133, 1000
BsrDI	GCAATG	4 cut(s)	41, 1320, 1441, 1707
BsrFI	RCCGGY	1 cut(s)	1944
BsrI	ACTGG	3 cut(s)	181, 679, 802
BssAI	RCCGGY	1 cut(s)	1944
BssECI	CCNNGG	3 cut(s)	958, 1930, 2220
BssMI	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
BssNAI	GTATAC	1 cut(s)	816
BssSI	CACGAG	3 cut(s)	237, 353, 1638
BssT1I	CCWWGG	2 cut(s)	958, 2220
Bst1107I	GTATAC	1 cut(s)	816
Bst2BI	CACGAG	3 cut(s)	237, 353, 1638
Bst2UI	CCWGG	2 cut(s)	1399, 1931
Bst4CI	ACNGT	6 cut(s)	31, 373, 1130, 1393, 1927, 2195
Bst6I	CTCTTC	2 cut(s)	773, 1455
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstBI	TTCGAA	1 cut(s)	1870
BstC8I	GCNNGC	5 cut(s)	605, 1059, 1222, 1525, 2185
BstDEI	CTNAG	6 cut(s)	111, 285, 858, 990, 2009, 2049
BstDSI	CCRYGG	2 cut(s)	958, 2220
BstF5I	GGATG	7 cut(s)	343, 448, 737, 892, 1733, 2032, 2062
BstKTI	GATC	5 cut(s)	957, 1609, 1753, 1923, 2166
BstMAI	GTCTC	5 cut(s)	133, 692, 1000, 2104, 2244
BstMBI	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
BstMWI	GCNNNNNNNGC	9 cut(s)	272, 281, 1058, 1226, 1361, 1403, 1445, 1690, 2005
BstNI	CCWGG	2 cut(s)	1399, 1931
BstNSI	RCATGY	4 cut(s)	718, 921, 1224, 2216
BstSCI	CCNGG	2 cut(s)	1397, 1929
BstSFI	CTRYAG	4 cut(s)	248, 999, 1652, 2118
BstV1I	GCAGC	3 cut(s)	1539, 1778, 1926
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BstZ17I	GTATAC	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	1728
BsuRI	GGCC	4 cut(s)	580, 1397, 2130, 2183
BtgI	CCRYGG	2 cut(s)	958, 2220
BtsCI	GGATG	7 cut(s)	343, 448, 737, 892, 1733, 2032, 2062
BtsI	GCAGTG	2 cut(s)	973, 1800
BtsIMutI	CAGTG	4 cut(s)	36, 973, 1800, 1923
Cac8I	GCNNGC	5 cut(s)	605, 1059, 1222, 1525, 2185
CaiI	CAGNNNCTG	1 cut(s)	2184
CciI	TCATGA	2 cut(s)	73, 2197
Cfr10I	RCCGGY	1 cut(s)	1944
Cfr13I	GGNCC	3 cut(s)	1789, 1981, 2181
CseI	GACGC	1 cut(s)	1277
Csp6I	GTAC	6 cut(s)	292, 418, 934, 1327, 1633, 2060
CspAI	ACCGGT	1 cut(s)	1944
CviQI	GTAC	6 cut(s)	292, 418, 934, 1327, 1633, 2060
DdeI	CTNAG	6 cut(s)	111, 285, 858, 990, 2009, 2049
DpnI	GATC	5 cut(s)	956, 1608, 1752, 1922, 2165
DpnII	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
DraI	TTTAAA	1 cut(s)	1188
DrdI	GACNNNNNNGTC	1 cut(s)	1025
DseDI	GACNNNNNNGTC	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	773, 1455
EarI	CTCTTC	2 cut(s)	773, 1455
Ecl136II	GAGCTC	1 cut(s)	1253
Eco130I	CCWWGG	2 cut(s)	958, 2220
Eco24I	GRGCYC	2 cut(s)	1255, 1695
Eco31I	GGTCTC	2 cut(s)	133, 1000
Eco47I	GGWCC	2 cut(s)	1789, 1981
Eco53kI	GAGCTC	1 cut(s)	1253
Eco57I	CTGAAG	3 cut(s)	629, 840, 1464
EcoICRI	GAGCTC	1 cut(s)	1253
EcoO109I	RGGNCCY	1 cut(s)	2181
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	1397, 1929
EcoT14I	CCWWGG	2 cut(s)	958, 2220
EcoT22I	ATGCAT	3 cut(s)	657, 1426, 1837
EcoT38I	GRGCYC	2 cut(s)	1255, 1695
ErhI	CCWWGG	2 cut(s)	958, 2220
Esp3I	CGTCTC	1 cut(s)	692
FalI	AAGNNNNNCTT	6 cut(s)	2002, 2034, 2025, 2057, 2076, 2108
FbaI	TGATCA	1 cut(s)	1606
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	4 cut(s)	1528, 1767, 1860, 1915
FokI	GGATG	7 cut(s)	350, 455, 744, 899, 1740, 2039, 2069
FriOI	GRGCYC	2 cut(s)	1255, 1695
Fsp4HI	GCNGC	4 cut(s)	1528, 1767, 1860, 1915
FspBI	CTAG	6 cut(s)	600, 684, 752, 1013, 1806, 2114
GluI	GCNGC	4 cut(s)	1528, 1767, 1860, 1915
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	3 cut(s)	366, 584, 1766
HaeIII	GGCC	4 cut(s)	580, 1397, 2130, 2183
HapII	CCGG	1 cut(s)	1945
HgaI	GACGC	1 cut(s)	1277
HpaII	CCGG	1 cut(s)	1945
HphI	GGTGA	4 cut(s)	782, 1142, 1555, 2236
Hpy166II	GTNNAC	6 cut(s)	103, 196, 352, 816, 1018, 1633
Hpy188I	TCNGA	6 cut(s)	114, 337, 414, 991, 1444, 1743
Hpy188III	TCNNGA	9 cut(s)	74, 353, 395, 1150, 1748, 1783, 2075, 2096, 2198
Hpy8I	GTNNAC	6 cut(s)	103, 196, 352, 816, 1018, 1633
HpyAV	CCTTC	5 cut(s)	60, 256, 445, 514, 942
HpyCH4III	ACNGT	6 cut(s)	31, 373, 1130, 1393, 1927, 2195
HpyF10VI	GCNNNNNNNGC	9 cut(s)	272, 281, 1058, 1226, 1361, 1403, 1445, 1690, 2005
HpyF3I	CTNAG	6 cut(s)	111, 285, 858, 990, 2009, 2049
Ksp22I	TGATCA	1 cut(s)	1606
Kzo9I	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
LguI	GCTCTTC	1 cut(s)	1455
LmnI	GCTCC	5 cut(s)	62, 88, 151, 1250, 1304
Lsp1109I	GCAGC	3 cut(s)	1539, 1778, 1926
LweI	GCATC	7 cut(s)	394, 433, 642, 1687, 1844, 2017, 2022
MaeI	CTAG	6 cut(s)	600, 684, 752, 1013, 1806, 2114
MaeIII	GTNAC	6 cut(s)	770, 1180, 1498, 1543, 1808, 2224
MalI	GATC	5 cut(s)	956, 1608, 1752, 1922, 2165
MboI	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
MfeI	CAATTG	1 cut(s)	1230
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	4 cut(s)	286, 1105, 1255, 1695
MlyI	GAGTC	3 cut(s)	373, 575, 2246
MmeI	TCCRAC	2 cut(s)	1712, 2280
Mph1103I	ATGCAT	3 cut(s)	657, 1426, 1837
MroXI	GAANNNNTTC	5 cut(s)	192, 455, 468, 1449, 2091
MseI	TTAA	6 cut(s)	437, 972, 1065, 1166, 1187, 2169
MslI	CAYNNNNRTG	6 cut(s)	29, 72, 660, 719, 1434, 1817
MspA1I	CMGCKG	2 cut(s)	1769, 1917
MspI	CCGG	1 cut(s)	1945
MspR9I	CCNGG	2 cut(s)	1399, 1931
MunI	CAATTG	1 cut(s)	1230
Mva1269I	GAATGC	5 cut(s)	655, 685, 946, 1292, 1473
MvaI	CCWGG	2 cut(s)	1399, 1931
MwoI	GCNNNNNNNGC	9 cut(s)	272, 281, 1058, 1226, 1361, 1403, 1445, 1690, 2005
NcoI	CCATGG	2 cut(s)	958, 2220
NdeII	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
NlaIV	GGNNCC	2 cut(s)	1596, 1791
NmeAIII	GCCGAG	2 cut(s)	412, 1033
NmuCI	GTSAC	3 cut(s)	770, 1543, 2224
NsiI	ATGCAT	3 cut(s)	657, 1426, 1837
NspI	RCATGY	4 cut(s)	718, 921, 1224, 2216
NspV	TTCGAA	1 cut(s)	1870
PaeI	GCATGC	1 cut(s)	1224
PagI	TCATGA	2 cut(s)	73, 2197
PciI	ACATGT	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	1455
PctI	GAATGC	5 cut(s)	655, 685, 946, 1292, 1473
PdmI	GAANNNNTTC	5 cut(s)	192, 455, 468, 1449, 2091
PfeI	GAWTC	8 cut(s)	115, 986, 1046, 1370, 1568, 1744, 2036, 2262
PinAI	ACCGGT	1 cut(s)	1944
PkrI	GCNGC	4 cut(s)	1529, 1768, 1861, 1916
PleI	GAGTC	3 cut(s)	373, 574, 2246
PpsI	GAGTC	3 cut(s)	373, 574, 2246
PscI	ACATGT	1 cut(s)	714
PsiI	TTATAA	2 cut(s)	497, 668
Psp124BI	GAGCTC	1 cut(s)	1255
Psp6I	CCWGG	2 cut(s)	1397, 1929
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	2 cut(s)	1397, 1929
PspN4I	GGNNCC	2 cut(s)	1596, 1791
PspPI	GGNCC	3 cut(s)	1789, 1981, 2181
PstNI	CAGNNNCTG	1 cut(s)	2184
PsuI	RGATCY	1 cut(s)	954
PvuII	CAGCTG	2 cut(s)	1769, 1917
RsaI	GTAC	6 cut(s)	293, 419, 935, 1328, 1634, 2061
RsaNI	GTAC	6 cut(s)	292, 418, 934, 1327, 1633, 2060
RseI	CAYNNNNRTG	6 cut(s)	29, 72, 660, 719, 1434, 1817
SacI	GAGCTC	1 cut(s)	1255
SapI	GCTCTTC	1 cut(s)	1455
SaqAI	TTAA	6 cut(s)	437, 972, 1065, 1166, 1187, 2169
SatI	GCNGC	4 cut(s)	1528, 1767, 1860, 1915
Sau3AI	GATC	5 cut(s)	954, 1606, 1750, 1920, 2163
Sau96I	GGNCC	3 cut(s)	1789, 1981, 2181
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	3 cut(s)	373, 575, 2246
ScrFI	CCNGG	2 cut(s)	1399, 1931
SduI	GDGCHC	4 cut(s)	286, 1105, 1255, 1695
SfaNI	GCATC	7 cut(s)	394, 433, 642, 1687, 1844, 2017, 2022
SfcI	CTRYAG	4 cut(s)	248, 999, 1652, 2118
SfuI	TTCGAA	1 cut(s)	1870
SinI	GGWCC	2 cut(s)	1789, 1981
SmiMI	CAYNNNNRTG	6 cut(s)	29, 72, 660, 719, 1434, 1817
SmlI	CTYRAG	4 cut(s)	61, 395, 911, 1254
SmoI	CTYRAG	4 cut(s)	61, 395, 911, 1254
SpeI	ACTAGT	1 cut(s)	751
SphI	GCATGC	1 cut(s)	1224
SsiI	CCGC	5 cut(s)	275, 507, 1265, 1860, 1897
SspMI	CTAG	6 cut(s)	600, 684, 752, 1013, 1806, 2114
SstI	GAGCTC	1 cut(s)	1255
StyD4I	CCNGG	2 cut(s)	1397, 1929
StyI	CCWWGG	2 cut(s)	958, 2220
TaaI	ACNGT	6 cut(s)	31, 373, 1130, 1393, 1927, 2195
TaqI	TCGA	6 cut(s)	186, 212, 459, 902, 1149, 1870
TatI	WGTACW	5 cut(s)	417, 933, 1326, 1632, 2059
TauI	GCSGC	1 cut(s)	1862
TfiI	GAWTC	8 cut(s)	115, 986, 1046, 1370, 1568, 1744, 2036, 2262
Tru1I	TTAA	6 cut(s)	437, 972, 1065, 1166, 1187, 2169
Tru9I	TTAA	6 cut(s)	437, 972, 1065, 1166, 1187, 2169
TscAI	CASTG	4 cut(s)	36, 973, 1807, 1930
TseFI	GTSAC	3 cut(s)	770, 1543, 2224
TseI	GCWGC	3 cut(s)	1527, 1766, 1914
Tsp45I	GTSAC	3 cut(s)	770, 1543, 2224
TspDTI	ATGAA	8 cut(s)	13, 42, 242, 272, 477, 1092, 1186, 1250
TspRI	CASTG	4 cut(s)	36, 973, 1807, 1930
VpaK11BI	GGWCC	2 cut(s)	1789, 1981
XapI	RAATTY	6 cut(s)	242, 583, 1040, 1133, 1243, 1492
XceI	RCATGY	4 cut(s)	718, 921, 1224, 2216
XmiI	GTMKAC	1 cut(s)	815
XmnI	GAANNNNTTC	5 cut(s)	192, 455, 468, 1449, 2091
XspI	CTAG	6 cut(s)	600, 684, 752, 1013, 1806, 2114
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	3 cut(s)	657, 1426, 1837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.