Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010087

Physical Location & Seq

Genomic Coordinates Forward (+)

10387883 .. 10388662

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1134800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGAGTCAACTCGTTTTCGTGTTCGCACTCAGCGCTCTCCTCTTATTCTCCCACTCGGTTTTCTGCAAGGAATCGCACTCCATCGACGACGACGATGAGGATCTCAGCTTCCTCAAGGAGCCCACCGACCACGACGATGATGCACCGCACTATCCAGATCCGGATCACTACAACGAGGGCAATTACGACGATCTTGAGAACTACTTCGATTTTGACGAGGGCGGCGATCATGAGTACTCGTACAAGGAGCCGGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGCGACGAATTTCAGCGATGTGGTGAAGAAGAACAGGTTCGTCATGGTCGAGTTCTACGCGCCGTGGTGCAGACACTGCCAGGTCGTGAAACCGGAGTACGCAACGGCAACTACCGAGCTCAAGGGGGAAAATGTAATTTTGGCCAAGAGTGACACCACGGAGGAGAACGAGCTGTCGCAGAAGTACGGCATCGAGGGTTTCCCGACTATCTTATTCTTCATTGATGGCGTTCACAAGCCTTACGCAGGCCAAATGACCAATGAGGGGATTGTAACCTGGATTAAGAAGAAGATTGGACCTGGTATCCAAAACGTGACCACATTTGAGGATGTGGAACAAATATTGACTGCTGAAAGCAAAGTCATTTTGGGCTACCTCAACTCTTTGGTGGGTCCTGAAAGTGACGAGCTTGTTGTTGCTTCAAGACTTGAAGATGAGGTATCCTTTTACCAAACTGTAGATCCTAAGGTGGCAAAAACTTTTCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

260

Amino Acids

29.35

Weight (kDa)

4.38

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	92 - 192	1.6e-25	Thioredoxin
Thioredoxin_2	PF13098	105 - 182	1.6e-07	Thioredoxin-like domain
Thioredoxin_7	PF13899	105 - 169	5.5e-06	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54960 AT3G54960 AT5G60640 AT5G60640 AT5G60640
fragaria_vesca	FvH4_3g32410
malus_domestica	MD03G1117500.v1.1 MD11G1135800.v1.1 MD13G1134800.v1.1
prunus_persica	Prupe.6G101200_v2.0.a1
pyrus_communis	pycom11g11260
rosa_chinensis	RchiOBHm_Chr5g0059381
rosa_laevigata	RLG00000035286
rosa_multiflora	Rmu_sc0000375.1_g000007
rosa_roxburghii	Rroxscaffold_1G00021150
rosa_rugosa	Rorug05G0322600
rosa_samantha	Rh5AG387100 Rh5BG398400 Rh5CG422400 Rh5DG414200
rosa_wichuraiana	Rw5G036420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccII	CGCG	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	2 cut(s)	149, 225
AclWI	GGATC	4 cut(s)	111, 155, 174, 743
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	4 cut(s)	239, 245, 386, 473
AfeI	AGCGCT	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	533, 552
AgsI	TTSAA	3 cut(s)	286, 711, 719
AjnI	CCWGG	3 cut(s)	366, 563, 586
AluBI	AGCT	4 cut(s)	111, 406, 460, 697
AluI	AGCT	4 cut(s)	111, 406, 460, 697
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	4 cut(s)	111, 155, 174, 743
AlwNI	CAGNNNCTG	1 cut(s)	363
Aor13HI	TCCGGA	1 cut(s)	163
Aor51HI	AGCGCT	1 cut(s)	37
AoxI	GGCC	2 cut(s)	429, 535
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	2 cut(s)	206, 323
AspLEI	GCGC	2 cut(s)	38, 349
AspS9I	GGNCC	2 cut(s)	584, 680
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	584, 680
AxyI	CCTNAGG	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	431
BanII	GRGCYC	2 cut(s)	126, 408
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	2 cut(s)	92, 506
BceAI	ACGGC	3 cut(s)	334, 408, 490
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	3 cut(s)	368, 565, 588
BciVI	GTATCC	2 cut(s)	602, 739
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	39
BfuI	GTATCC	2 cut(s)	602, 739
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	3 cut(s)	368, 565, 588
Bme18I	GGWCC	2 cut(s)	584, 680
BmgT120I	GGNCC	2 cut(s)	584, 680
BmiI	GGNNCC	3 cut(s)	123, 252, 681
BmrFI	CCNGG	3 cut(s)	368, 565, 588
BmsI	GCATC	2 cut(s)	133, 486
BpuEI	CTTGAG	3 cut(s)	101, 218, 392
BsaBI	GATNNNNATC	2 cut(s)	102, 165
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	350, 444
BsaWI	WCCGGW	2 cut(s)	163, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 552
Bse21I	CCTNAGG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	102, 165
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	3 cut(s)	368, 565, 588
BseDI	CCNNGG	2 cut(s)	350, 444
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	2 cut(s)	102, 165
BseLI	CCNNNNNNNGG	2 cut(s)	533, 552
BseMII	CTCAG	2 cut(s)	46, 121
BseRI	GAGGAG	2 cut(s)	32, 464
BsgI	GTGCAG	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	431, 537
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	164, 254, 380
BslI	CCNNNNNNNGG	2 cut(s)	533, 552
BsnI	GGCC	2 cut(s)	431, 537
Bsp1286I	GDGCHC	2 cut(s)	126, 408
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
BspACI	CCGC	2 cut(s)	149, 225
BspANI	GGCC	2 cut(s)	431, 537
BspCNI	CTCAG	2 cut(s)	45, 120
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	123, 252, 681
BspPI	GGATC	4 cut(s)	111, 155, 174, 743
BssECI	CCNNGG	2 cut(s)	350, 444
BssMI	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
BssNI	GRCGYC	1 cut(s)	273
Bst2UI	CCWGG	3 cut(s)	368, 565, 588
Bst4CI	ACNGT	1 cut(s)	745
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	32, 107, 753
BstDSI	CCRYGG	2 cut(s)	350, 444
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 349
BstKTI	GATC	6 cut(s)	106, 163, 169, 196, 232, 751
BstMBI	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 363
BstNI	CCWGG	3 cut(s)	368, 565, 588
BstSCI	CCNGG	3 cut(s)	366, 563, 586
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	347
BstX2I	RGATCY	3 cut(s)	103, 160, 748
BstYI	RGATCY	3 cut(s)	103, 160, 748
Bsu36I	CCTNAGG	1 cut(s)	753
BsuI	GTATCC	2 cut(s)	602, 739
BsuRI	GGCC	2 cut(s)	431, 537
BtgI	CCRYGG	2 cut(s)	350, 444
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	1 cut(s)	363
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	38, 349
Cfr13I	GGNCC	2 cut(s)	584, 680
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	4 cut(s)	238, 244, 385, 472
CviAII	CATG	2 cut(s)	233, 331
CviQI	GTAC	4 cut(s)	238, 244, 385, 472
DdeI	CTNAG	3 cut(s)	32, 107, 753
DpnI	GATC	6 cut(s)	105, 162, 168, 195, 231, 750
DpnII	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
EaeI	YGGCCR	1 cut(s)	429
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	126, 408
Eco47I	GGWCC	2 cut(s)	584, 680
Eco47III	AGCGCT	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	366, 563, 586
EcoT38I	GRGCYC	2 cut(s)	126, 408
FaeI	CATG	2 cut(s)	236, 334
FaiI	YATR	2 cut(s)	234, 332
FatI	CATG	2 cut(s)	232, 330
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	2 cut(s)	126, 408
Fsp4HI	GCNGC	1 cut(s)	226
GlaI	GCGC	2 cut(s)	37, 348
GluI	GCNGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	431, 537
HapII	CCGG	3 cut(s)	164, 254, 380
HhaI	GCGC	2 cut(s)	38, 349
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	236, 334
Hin6I	GCGC	2 cut(s)	36, 347
HinP1I	GCGC	2 cut(s)	36, 347
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	7, 74
HpaII	CCGG	3 cut(s)	164, 254, 380
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	11, 262, 520
Hpy188III	TCNNGA	9 cut(s)	158, 164, 197, 233, 373, 490, 683, 711, 777
Hpy8I	GTNNAC	3 cut(s)	11, 262, 520
Hpy99I	CGWCG	8 cut(s)	92, 95, 98, 140, 194, 278, 281, 295
HpyAV	CCTTC	2 cut(s)	262, 280
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	2 cut(s)	273, 600
HpyCH4V	TGCA	3 cut(s)	69, 146, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 363
HpyF3I	CTNAG	3 cut(s)	32, 107, 753
HpySE526I	ACGT	2 cut(s)	273, 600
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	236, 334
HspAI	GCGC	2 cut(s)	36, 347
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
LmnI	GCTCC	2 cut(s)	121, 250
LweI	GCATC	2 cut(s)	133, 486
MabI	ACCWGGT	1 cut(s)	586
MaeII	ACGT	2 cut(s)	273, 600
MaeIII	GTNAC	4 cut(s)	437, 559, 601, 689
MalI	GATC	6 cut(s)	105, 162, 168, 195, 231, 750
MboI	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
MboII	GAAGA	6 cut(s)	325, 328, 496, 586, 589, 731
MflI	RGATCY	3 cut(s)	103, 160, 748
MhlI	GDGCHC	2 cut(s)	126, 408
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	3 cut(s)	184, 295, 423
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	16
Mox20I	TGGCCA	1 cut(s)	431
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	2 cut(s)	206, 323
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	3 cut(s)	164, 254, 380
MspR9I	CCNGG	3 cut(s)	368, 565, 588
MvaI	CCWGG	3 cut(s)	368, 565, 588
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	35, 363
NdeII	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
NlaIII	CATG	2 cut(s)	236, 334
NlaIV	GGNNCC	3 cut(s)	123, 252, 681
NmuCI	GTSAC	3 cut(s)	437, 601, 689
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	5 cut(s)	93, 216, 225, 270, 333
PdmI	GAANNNNTTC	2 cut(s)	206, 323
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	680
Psp124BI	GAGCTC	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	3 cut(s)	366, 563, 586
PspGI	CCWGG	3 cut(s)	366, 563, 586
PspN4I	GGNNCC	3 cut(s)	123, 252, 681
PspPI	GGNCC	2 cut(s)	584, 680
PspPPI	RGGWCCY	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	363
PsuI	RGATCY	3 cut(s)	103, 160, 748
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	4 cut(s)	239, 245, 386, 473
RsaNI	GTAC	4 cut(s)	238, 244, 385, 472
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	6 cut(s)	103, 160, 166, 193, 229, 748
Sau96I	GGNCC	2 cut(s)	584, 680
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	368, 565, 588
SduI	GDGCHC	2 cut(s)	126, 408
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	133, 486
SfcI	CTRYAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	584, 680
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	3 cut(s)	116, 197, 407
SmoI	CTYRAG	3 cut(s)	116, 197, 407
Sse9I	AATT	3 cut(s)	184, 295, 423
SsiI	CCGC	2 cut(s)	149, 225
SspI	AATATT	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	366, 563, 586
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	2 cut(s)	276, 603
TaqI	TCGA	4 cut(s)	87, 210, 336, 480
TasI	AATT	3 cut(s)	184, 295, 423
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	3 cut(s)	437, 601, 689
Tsp45I	GTSAC	3 cut(s)	437, 601, 689
TspDTI	ATGAA	1 cut(s)	496
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	368
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	584, 680
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	206, 323
ZraI	GACGTC	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.