Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010087

Physical Location & Seq

Genomic Coordinates Forward (+)

38596803 .. 38597535

Gene Structure 733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0322600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACCGAAACTTTTGGGAGGAGGAGGCATGCCACTTTGGTCAAGAAAGCCCAAGAATTATCTATTCTTTGTGCCGCAGAGGTCGCAGTCATCGCGTTCACAAGCGATGGAAAGCTTCATGAGTATTCTAGCACCAGTAGTGTGGAACACACTCTTTCAAGATACAAGAACAATAAGGGCGGCCAAGTCCTCCCAACCAAGGTGGAATCTGATCCGCCAAAGGAGTACCGCCGCGAAACTGCTGCGGAAGAAAAGGACCCAAAATCAAGTGACAAAGTTCTTCATGCACTCAAGGGACAACATGCAGCGCTGAAATTAGACAAGCAGCGGAGGATGGGAAAGGCGTTGGATGGCTTAAGTAGGGAAGAGCTGTATGCCCTAGAGCAACAACAAAAGTGGGTGTTAGTATCTGTCATGAAAAAGAAGGAAGAACTACTTGTGCGGTTGTTGCACAGGTCTAAGGCGCGTGAACATCAAGCCATTCAGGAGAAGGAGAATTTGAGAAGGGGTTATGAAGTGAGGACGATGGAAAAGCCATATCTTCAACTGTTCCCTGAGAACAGTACGAGTTTCTGCACAAGCTCGAATAAAGCTGTTTCACTTTCGAATTGTCCAACAAAGAATATGGACACTTCTTTGCACCTTGGGCTGTCATATAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

221

Amino Acids

25.13

Weight (kDa)

9.46

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	8 - 42	5.5e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 169	1.2e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54960 AT3G54960 AT5G60640 AT5G60640 AT5G60640
fragaria_vesca	FvH4_3g32410
malus_domestica	MD03G1117500.v1.1 MD11G1135800.v1.1 MD13G1134800.v1.1
prunus_persica	Prupe.6G101200_v2.0.a1
pyrus_communis	pycom11g11260
rosa_chinensis	RchiOBHm_Chr5g0059381
rosa_laevigata	RLG00000035286
rosa_multiflora	Rmu_sc0000375.1_g000007
rosa_roxburghii	Rroxscaffold_1G00021150
rosa_rugosa	Rorug05G0322600
rosa_samantha	Rh5AG387100 Rh5BG398400 Rh5CG422400 Rh5DG414200
rosa_wichuraiana	Rw5G036420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	95, 234, 466
AciI	CCGC	8 cut(s)	75, 180, 215, 229, 232, 245, 328, 442
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	496
AfaI	GTAC	2 cut(s)	227, 565
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	159, 545
AluBI	AGCT	4 cut(s)	115, 370, 582, 593
AluI	AGCT	4 cut(s)	115, 370, 582, 593
AlwI	GGATC	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	242, 305, 325
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	2 cut(s)	310, 466
AspS9I	GGNCC	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	229, 317, 337
BccI	CCATC	4 cut(s)	101, 328, 344, 520
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BfaI	CTAG	2 cut(s)	129, 380
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	355
BisI	GCNGC	6 cut(s)	75, 181, 232, 243, 306, 326
BlsI	GCNGC	6 cut(s)	76, 182, 233, 244, 307, 327
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	198, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	198, 643
BseGI	GGATG	2 cut(s)	339, 355
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	34, 37
BseXI	GCAGC	3 cut(s)	229, 317, 337
BsgI	GTGCAG	1 cut(s)	559
Bsh1236I	CGCG	3 cut(s)	95, 234, 466
BshFI	GGCC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	605
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	8 cut(s)	75, 180, 215, 229, 232, 245, 328, 442
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	3 cut(s)	95, 234, 466
BspHI	TCATGA	2 cut(s)	118, 414
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	198, 643
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	198, 643
Bst4CI	ACNGT	2 cut(s)	549, 563
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	459, 555
BstF5I	GGATG	2 cut(s)	339, 355
BstFNI	CGCG	3 cut(s)	95, 234, 466
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 466
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 448, 646
BstNSI	RCATGY	2 cut(s)	32, 305
BstUI	CGCG	3 cut(s)	95, 234, 466
BstV1I	GCAGC	3 cut(s)	229, 317, 337
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	183
BtgZI	GCGATG	2 cut(s)	76, 120
BtsCI	GGATG	2 cut(s)	339, 355
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	2 cut(s)	118, 414
CfoI	GCGC	2 cut(s)	310, 466
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	226, 564
CspCI	CAANNNNNGTGG	4 cut(s)	183, 218, 377, 412
CviAII	CATG	5 cut(s)	29, 119, 284, 302, 415
CviQI	GTAC	2 cut(s)	226, 564
DdeI	CTNAG	2 cut(s)	459, 555
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	198, 643
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	198, 643
ErhI	CCWWGG	2 cut(s)	198, 643
FaeI	CATG	5 cut(s)	32, 122, 287, 305, 418
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	5 cut(s)	28, 118, 283, 301, 414
Fnu4HI	GCNGC	6 cut(s)	75, 181, 232, 243, 306, 326
FokI	GGATG	2 cut(s)	346, 362
Fsp4HI	GCNGC	6 cut(s)	75, 181, 232, 243, 306, 326
FspBI	CTAG	2 cut(s)	129, 380
GlaI	GCGC	2 cut(s)	309, 465
GluI	GCNGC	6 cut(s)	75, 181, 232, 243, 306, 326
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	310, 466
Hin1II	CATG	5 cut(s)	32, 122, 287, 305, 418
Hin6I	GCGC	2 cut(s)	308, 464
HinP1I	GCGC	2 cut(s)	308, 464
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	99, 470
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	5 cut(s)	43, 119, 159, 415, 485
Hpy8I	GTNNAC	2 cut(s)	99, 470
HpyAV	CCTTC	3 cut(s)	418, 484, 498
HpyCH4III	ACNGT	2 cut(s)	549, 563
HpyCH4V	TGCA	5 cut(s)	287, 305, 451, 576, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 448, 646
HpyF3I	CTNAG	2 cut(s)	459, 555
Hsp92II	CATG	5 cut(s)	32, 122, 287, 305, 418
HspAI	GCGC	2 cut(s)	308, 464
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	360
LpnPI	CCDG	4 cut(s)	148, 439, 470, 567
Lsp1109I	GCAGC	3 cut(s)	229, 317, 337
MaeI	CTAG	2 cut(s)	129, 380
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	260, 272, 377, 440, 533
MluCI	AATT	4 cut(s)	56, 314, 496, 607
MmeI	TCCRAC	2 cut(s)	327, 638
MnlI	CCTC	7 cut(s)	12, 15, 18, 73, 200, 324, 513
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	328
MspCI	CTTAAG	1 cut(s)	355
MvnI	CGCG	3 cut(s)	95, 234, 466
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 448, 646
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	5 cut(s)	32, 122, 287, 305, 418
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	2 cut(s)	32, 305
NspV	TTCGAA	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	32
PagI	TCATGA	2 cut(s)	118, 414
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	76, 182, 233, 244, 307, 327
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	227, 565
RsaNI	GTAC	2 cut(s)	226, 564
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	6 cut(s)	75, 181, 232, 243, 306, 326
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	256
SetI	ASST	8 cut(s)	84, 117, 204, 372, 458, 584, 595, 645
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	2 cut(s)	290, 355
SmoI	CTYRAG	2 cut(s)	290, 355
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	4 cut(s)	56, 314, 496, 607
SsiI	CCGC	8 cut(s)	75, 180, 215, 229, 232, 245, 328, 442
SspMI	CTAG	2 cut(s)	129, 380
StyI	CCWWGG	2 cut(s)	198, 643
TaaI	ACNGT	2 cut(s)	549, 563
TaqI	TCGA	2 cut(s)	584, 605
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	56, 314, 496, 607
TauI	GCSGC	3 cut(s)	77, 183, 234
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	242, 305, 325
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	107, 272, 431, 528
Vha464I	CTTAAG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	2 cut(s)	32, 305
XspI	CTAG	2 cut(s)	129, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.