Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010087

Physical Location & Seq

Genomic Coordinates Forward (+)

64278169 .. 64283074

Gene Structure 4906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCGACAGAGGAGAACGAGTTGTCTCAGGAGTATGATCGACGGTGTTCACAAGCCTTATACAGGGCAAAGGACCAAAGAGGCTATTGTTACCTGGATCAAGAAGAAGACAGGACCTGGTATCTCTAACGTGACCACAGTGGAGGATGCAGAGCGCATTTTGACTTCTGAAACTAAATTCGTTTTGGGATTCCTCAACTCTTTGGTGGGTCCTGAGAGTGATGAGCTTGCTGCTGCTTCAAGACTTGAGGATGATGTCAACTTCTACCAAACAGTGGATCCAAAGGTGGCAAAACTTTTCCATATTGACTCTGAGGCCAAACGCCCAGCGCTGGTCCTGATAAAGAAAGAGGATGAGAAGCTGAGCTATTTTGCCGGTAAATTCGATAAATCTGCAATTGTGGAGTTTGTCTTTGCAAACAAGCTTCCTTTGGTTGTCACATTTACTAGGGAGAACGCCCCTTCCATTTTTGAAAGTGAAATAAAGAAACAGCTATTGCTCTTTGCCACTTCAACCGACTCAAAGAAGGTTCTCCCAGAGTTTGTAGAGGCAGCAAAGTTATTCAAAGGAAAGCTTATCTTTGTATTTGTGGAAACGGATAATGAAGATGTCGGAAAGCCAGTTTCAGATTATTTTGGTATCACTGGTGATGCTCCAACGGTTCTCGCATACACCGGAAATGATGATGCTAGGAAGTTTATTCTTGATAAAGAAGCAACCTTGGCTAACATAAAGGCTTTTGGGGAGGACTTCCTTGAGGATAAACTTAAAGCTTTCTATAAGTCAGACCCGATCCCGGAGACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAATTTTGATGATATTGTCTTGGATGAGTCAAAGGATGTTCTTCTCGAGATTTATGCACCCTGGTGCGGGCATTGCCAATCTCTGGAACCAACCTACAACAAGCTTGCCAAACATCTACGAGGCATTGAGTCTATTGTCATAGCCAAGATGGACGGAACCACAAATGAGCATCCCAGGGCAAAGGCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCTGGAAACAAGAGCTTTGATCCTATTACCGTAGATGCTGACCGTACAGTGGTGGCGTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCTTTCAAGCTCCAAAAGCCAACTTCAACTACAAAATCCGCGGAATCTGATGCTAAAGAGAGCCAGGAGAGCAGCAAAAACGATGTGAAGGATGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

415

Amino Acids

46.18

Weight (kDa)

5.62

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_6	PF13848	76 - 247	1.6e-24	Thioredoxin-like domain
Thioredoxin	PF00085	273 - 357	2e-20	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54960 AT3G54960 AT5G60640 AT5G60640 AT5G60640
fragaria_vesca	FvH4_3g32410
malus_domestica	MD03G1117500.v1.1 MD11G1135800.v1.1 MD13G1134800.v1.1
prunus_persica	Prupe.6G101200_v2.0.a1
pyrus_communis	pycom11g11260
rosa_chinensis	RchiOBHm_Chr5g0059381
rosa_laevigata	RLG00000035286
rosa_multiflora	Rmu_sc0000375.1_g000007
rosa_roxburghii	Rroxscaffold_1G00021150
rosa_rugosa	Rorug05G0322600
rosa_samantha	Rh5AG387100 Rh5BG398400 Rh5CG422400 Rh5DG414200
rosa_wichuraiana	Rw5G036420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	274, 919
AccII	CGCG	1 cut(s)	1184
AciI	CCGC	3 cut(s)	903, 1182, 1184
AclWI	GGATC	5 cut(s)	104, 272, 285, 787, 1067
AcsI	RAATTY	2 cut(s)	176, 380
AfaI	GTAC	1 cut(s)	1099
AfeI	AGCGCT	1 cut(s)	330
AfiI	CCNNNNNNNGG	8 cut(s)	62, 274, 331, 796, 902, 903, 919, 1102
AgsI	TTSAA	6 cut(s)	240, 473, 513, 565, 1150, 1170
AjnI	CCWGG	5 cut(s)	92, 115, 896, 1010, 1206
AleI	CACNNNNGTG	1 cut(s)	898
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
Alw26I	GTCTC	2 cut(s)	29, 794
AlwI	GGATC	5 cut(s)	104, 272, 285, 787, 1067
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	881
Aor51HI	AGCGCT	1 cut(s)	330
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	4 cut(s)	230, 233, 551, 1215
ApoI	RAATTY	2 cut(s)	176, 380
AspLEI	GCGC	2 cut(s)	156, 331
AspS9I	GGNCC	4 cut(s)	72, 113, 209, 334
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	4 cut(s)	72, 113, 209, 334
BamHI	GGATCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	217, 220, 563, 1227
BccI	CCATC	3 cut(s)	803, 979, 1019
BcgI	CGANNNNNNTGC	4 cut(s)	374, 408, 872, 906
BciT130I	CCWGG	5 cut(s)	94, 117, 898, 1012, 1208
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	2 cut(s)	29, 794
BfaI	CTAG	2 cut(s)	447, 690
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	4 cut(s)	231, 234, 552, 1216
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	4 cut(s)	232, 235, 553, 1217
Bme1390I	CCNGG	6 cut(s)	94, 117, 797, 898, 1012, 1208
Bme18I	GGWCC	4 cut(s)	72, 113, 209, 334
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	4 cut(s)	72, 113, 209, 334
BmiI	GGNNCC	5 cut(s)	210, 279, 924, 994, 1031
BmrFI	CCNGG	6 cut(s)	94, 117, 797, 898, 1012, 1208
BmsI	GCATC	7 cut(s)	136, 640, 676, 1015, 1078, 1145, 1183
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	266, 776, 1109
BpuMI	CCSGG	1 cut(s)	797
BsaJI	CCNNGG	5 cut(s)	720, 896, 1010, 1011, 1182
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	8 cut(s)	62, 274, 331, 796, 902, 903, 919, 1102
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	620, 649
Bse3DI	GCAATG	1 cut(s)	907
BseBI	CCWGG	5 cut(s)	94, 117, 898, 1012, 1208
BseDI	CCNNGG	5 cut(s)	720, 896, 1010, 1011, 1182
BseGI	GGATG	7 cut(s)	151, 256, 358, 865, 877, 1006, 1240
BseLI	CCNNNNNNNGG	8 cut(s)	62, 274, 331, 796, 902, 903, 919, 1102
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	4 cut(s)	40, 204, 303, 353
BseNI	ACTGG	2 cut(s)	620, 649
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	217, 220, 563, 1227
BseYI	CCCAGC	2 cut(s)	325, 1051
Bsh1236I	CGCG	1 cut(s)	1184
BshFI	GGCC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	3 cut(s)	375, 675, 797
BslI	CCNNNNNNNGG	8 cut(s)	62, 274, 331, 796, 902, 903, 919, 1102
BsmAI	GTCTC	2 cut(s)	29, 794
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	881
Bsp143I	GATC	5 cut(s)	36, 96, 277, 792, 1072
Bsp1720I	GCTNAGC	1 cut(s)	362
BspACI	CCGC	3 cut(s)	903, 1182, 1184
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	4 cut(s)	39, 205, 304, 354
BspFNI	CGCG	1 cut(s)	1184
BspLI	GGNNCC	5 cut(s)	210, 279, 924, 994, 1031
BspPI	GGATC	5 cut(s)	104, 272, 285, 787, 1067
BsrDI	GCAATG	1 cut(s)	907
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	620, 649
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	5 cut(s)	720, 896, 1010, 1011, 1182
BssMI	GATC	5 cut(s)	36, 96, 277, 792, 1072
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	5 cut(s)	94, 117, 898, 1012, 1208
Bst4CI	ACNGT	7 cut(s)	44, 139, 274, 661, 1084, 1097, 1102
BstC8I	GCNNGC	3 cut(s)	228, 905, 942
BstDEI	CTNAG	4 cut(s)	26, 213, 312, 362
BstDSI	CCRYGG	1 cut(s)	1182
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	7 cut(s)	151, 256, 358, 865, 877, 1006, 1240
BstFNI	CGCG	1 cut(s)	1184
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	156, 331
BstKTI	GATC	5 cut(s)	39, 99, 280, 795, 1075
BstMAI	GTCTC	2 cut(s)	29, 794
BstMBI	GATC	5 cut(s)	36, 96, 277, 792, 1072
BstMWI	GCNNNNNNNGC	4 cut(s)	722, 909, 1159, 1212
BstNI	CCWGG	5 cut(s)	94, 117, 898, 1012, 1208
BstNSI	RCATGY	1 cut(s)	1136
BstSCI	CCNGG	6 cut(s)	92, 115, 795, 896, 1010, 1206
BstUI	CGCG	1 cut(s)	1184
BstV1I	GCAGC	4 cut(s)	217, 220, 563, 1227
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	1182
BtsCI	GGATG	7 cut(s)	151, 256, 358, 865, 877, 1006, 1240
BtsIMutI	CAGTG	4 cut(s)	144, 279, 642, 1107
Cac8I	GCNNGC	3 cut(s)	228, 905, 942
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	2 cut(s)	156, 331
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	72, 113, 209, 334
Cfr42I	CCGCGG	1 cut(s)	1185
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	1098
CviAII	CATG	1 cut(s)	1133
CviQI	GTAC	1 cut(s)	1098
DdeI	CTNAG	4 cut(s)	26, 213, 312, 362
DpnI	GATC	5 cut(s)	38, 98, 279, 794, 1074
DpnII	GATC	5 cut(s)	36, 96, 277, 792, 1072
Eco130I	CCWWGG	1 cut(s)	720
Eco47I	GGWCC	4 cut(s)	72, 113, 209, 334
Eco47III	AGCGCT	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	881
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	2 cut(s)	113, 209
EcoRII	CCWGG	5 cut(s)	92, 115, 896, 1010, 1206
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	1138
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	1 cut(s)	1136
FaiI	YATR	9 cut(s)	35, 60, 303, 670, 731, 780, 891, 977, 1134
FalI	AAGNNNNNCTT	4 cut(s)	558, 590, 563, 595
FatI	CATG	1 cut(s)	1132
FauI	CCCGC	1 cut(s)	896
Fnu4HI	GCNGC	4 cut(s)	231, 234, 552, 1216
FokI	GGATG	6 cut(s)	158, 263, 365, 872, 884, 993
Fsp4HI	GCNGC	4 cut(s)	231, 234, 552, 1216
FspBI	CTAG	2 cut(s)	447, 690
GlaI	GCGC	2 cut(s)	155, 330
GluI	GCNGC	4 cut(s)	231, 234, 552, 1216
GsaI	CCCAGC	2 cut(s)	329, 1055
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	3 cut(s)	375, 675, 797
HhaI	GCGC	2 cut(s)	156, 331
Hin1II	CATG	1 cut(s)	1136
Hin6I	GCGC	2 cut(s)	154, 329
HinP1I	GCGC	2 cut(s)	154, 329
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	4 cut(s)	422, 572, 771, 938
HinfI	GANTC	6 cut(s)	189, 308, 518, 863, 965, 1187
HpaII	CCGG	3 cut(s)	375, 675, 797
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	49, 259
Hpy188I	TCNGA	6 cut(s)	169, 313, 614, 628, 787, 1192
Hpy8I	GTNNAC	2 cut(s)	49, 259
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	471, 520, 1225
HpyCH4III	ACNGT	7 cut(s)	44, 139, 274, 661, 1084, 1097, 1102
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	149, 395, 416, 893, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	722, 909, 1159, 1212
HpyF3I	CTNAG	4 cut(s)	26, 213, 312, 362
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	1136
HspAI	GCGC	2 cut(s)	154, 329
KspI	CCGCGG	1 cut(s)	1185
Kzo9I	GATC	5 cut(s)	36, 96, 277, 792, 1072
LmnI	GCTCC	2 cut(s)	658, 1158
Lsp1109I	GCAGC	4 cut(s)	217, 220, 563, 1227
LweI	GCATC	7 cut(s)	136, 640, 676, 1015, 1078, 1145, 1183
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	2 cut(s)	447, 690
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	3 cut(s)	88, 130, 436
MalI	GATC	5 cut(s)	38, 98, 279, 794, 1074
MboI	GATC	5 cut(s)	36, 96, 277, 792, 1072
MboII	GAAGA	5 cut(s)	115, 118, 617, 869, 1039
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	5 cut(s)	176, 380, 396, 838, 1238
MlyI	GAGTC	4 cut(s)	302, 512, 872, 974
MmeI	TCCRAC	3 cut(s)	592, 680, 811
Mph1103I	ATGCAT	1 cut(s)	1138
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	1 cut(s)	898
MspA1I	CMGCKG	2 cut(s)	1055, 1184
MspI	CCGG	3 cut(s)	375, 675, 797
MspR9I	CCNGG	6 cut(s)	94, 117, 797, 898, 1012, 1208
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	5 cut(s)	94, 117, 898, 1012, 1208
MvnI	CGCG	1 cut(s)	1184
MwoI	GCNNNNNNNGC	4 cut(s)	722, 909, 1159, 1212
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	5 cut(s)	36, 96, 277, 792, 1072
NlaIII	CATG	1 cut(s)	1136
NlaIV	GGNNCC	5 cut(s)	210, 279, 924, 994, 1031
NmuCI	GTSAC	2 cut(s)	130, 436
NsiI	ATGCAT	1 cut(s)	1138
NspI	RCATGY	1 cut(s)	1136
OliI	CACNNNNGTG	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	881
PasI	CCCWGGG	1 cut(s)	1011
PfeI	GAWTC	2 cut(s)	189, 1187
PflMI	CCANNNNNTGG	2 cut(s)	274, 919
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	4 cut(s)	232, 235, 553, 1217
PleI	GAGTC	4 cut(s)	302, 512, 871, 973
PpsI	GAGTC	4 cut(s)	302, 512, 871, 973
PpuMI	RGGWCCY	2 cut(s)	113, 209
Psp5II	RGGWCCY	2 cut(s)	113, 209
Psp6I	CCWGG	5 cut(s)	92, 115, 896, 1010, 1206
PspFI	CCCAGC	2 cut(s)	325, 1051
PspGI	CCWGG	5 cut(s)	92, 115, 896, 1010, 1206
PspN4I	GGNNCC	5 cut(s)	210, 279, 924, 994, 1031
PspPI	GGNCC	4 cut(s)	72, 113, 209, 334
PspPPI	RGGWCCY	2 cut(s)	113, 209
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	1055
RsaI	GTAC	1 cut(s)	1099
RsaNI	GTAC	1 cut(s)	1098
RseI	CAYNNNNRTG	1 cut(s)	898
SacII	CCGCGG	1 cut(s)	1185
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	4 cut(s)	231, 234, 552, 1216
Sau3AI	GATC	5 cut(s)	36, 96, 277, 792, 1072
Sau96I	GGNCC	4 cut(s)	72, 113, 209, 334
SchI	GAGTC	4 cut(s)	302, 512, 872, 974
ScrFI	CCNGG	6 cut(s)	94, 117, 797, 898, 1012, 1208
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	7 cut(s)	136, 640, 676, 1015, 1078, 1145, 1183
Sfr274I	CTCGAG	1 cut(s)	881
Sfr303I	CCGCGG	1 cut(s)	1185
SgrBI	CCGCGG	1 cut(s)	1185
SinI	GGWCC	4 cut(s)	72, 113, 209, 334
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	898
SmlI	CTYRAG	4 cut(s)	245, 755, 881, 1124
SmoI	CTYRAG	4 cut(s)	245, 755, 881, 1124
Sse9I	AATT	5 cut(s)	176, 380, 396, 838, 1238
SsiI	CCGC	3 cut(s)	903, 1182, 1184
SspMI	CTAG	2 cut(s)	447, 690
StyD4I	CCNGG	6 cut(s)	92, 115, 795, 896, 1010, 1206
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	7 cut(s)	44, 139, 274, 661, 1084, 1097, 1102
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	39, 384, 882
TasI	AATT	5 cut(s)	176, 380, 396, 838, 1238
TfiI	GAWTC	2 cut(s)	189, 1187
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	4 cut(s)	144, 279, 649, 1107
TseFI	GTSAC	2 cut(s)	130, 436
TseI	GCWGC	4 cut(s)	230, 233, 551, 1215
Tsp45I	GTSAC	2 cut(s)	130, 436
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	2 cut(s)	611, 1005
TspRI	CASTG	4 cut(s)	144, 279, 649, 1107
Van91I	CCANNNNNTGG	2 cut(s)	274, 919
VpaK11BI	GGWCC	4 cut(s)	72, 113, 209, 334
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	2 cut(s)	176, 380
XceI	RCATGY	1 cut(s)	1136
XhoI	CTCGAG	1 cut(s)	881
XspI	CTAG	2 cut(s)	447, 690
Zsp2I	ATGCAT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.