Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019268

Physical Location & Seq

Genomic Coordinates Forward (+)

19762555 .. 19762872

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1211700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGCTCCAAATTAAGGTCGATGACAGCACAGGAAAGATTGATGATGCTTGCTTCAAGACCTTTGGGTGTGGATCGGCCATTGCTTCTTCTTCTGTCGCTACGGAATGGGTGAAGGGGAAACAAATGGAGGAAGTCTTGACGATTAAGAACACAGAGATTGCGAAACATCTTTTGTTTCCTCCAGTGAAGCTTCACTACAGCATGCTCGCCAAGGATGCCATTAAGGCAGCTGTTAAAGACTATCAAGCCAAGCAAACCAAAAAAAAAACTGGCAGTATAGAGGCATCTCCTGCGGAGAAGGCTGTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

106

Amino Acids

11.37

Weight (kDa)

9.23

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	1 - 88	1.5e-34	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019268)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171600.v1.1 MD13G1211600.v1.1 MD13G1211700.v1.1 MD14G1077900.v1.1
rosa_multiflora	Rmu_sc0002363.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322320 Rroxscaffold_6G00390330
rosa_samantha	Rh3DG317400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	3 cut(s)	7, 193, 233
AluI	AGCT	3 cut(s)	7, 193, 233
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbvI	GCAGC	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmsI	GCATC	3 cut(s)	37, 208, 296
BpmI	CTGGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	185, 277
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	185, 277
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	185, 277
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	52, 206, 210
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 227, 293, 302, 311
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	52, 206, 210
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	7, 80, 193, 233, 251, 305
CviKI_1	RGCY	6 cut(s)	7, 80, 193, 233, 251, 305
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	206, 281
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	191
HphI	GGTGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	58, 139
HpyAV	CCTTC	2 cut(s)	109, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 227, 293, 302, 311
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	18, 198, 258, 306
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	3 cut(s)	37, 208, 296
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	81, 84
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	3 cut(s)	124, 192, 277
MseI	TTAA	4 cut(s)	15, 147, 225, 237
MspA1I	CMGCKG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	218, 227, 293, 302, 311
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	208
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	15, 147, 225, 237
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	74
SetI	ASST	5 cut(s)	9, 21, 65, 195, 235
SfaNI	GCATC	3 cut(s)	37, 208, 296
SfcI	CTRYAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	4 cut(s)	15, 147, 225, 237
Tru9I	TTAA	4 cut(s)	15, 147, 225, 237
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	192
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.