Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0019268

Physical Location & Seq

Genomic Coordinates Forward (+)

8893154 .. 8893342

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1077900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGGAAGTCTTGACGATTAAGAACACAGAGATTACAAAACATCTTTCGCTTCCTCCAGTGAAGCTTCACTGCTGCATGCTCGCCGAGGATGCCATTAAGGCAGCTGTTAAAGACTATCAAGCCAAGCAAACCAAAAAAACTGGCAGTACAGAATCATCTCCTACGGAGAAGGCTGTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

63

Amino Acids

6.77

Weight (kDa)

7.78

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	1 - 46	1.7e-11	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019268)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171600.v1.1 MD13G1211600.v1.1 MD13G1211700.v1.1 MD14G1077900.v1.1
rosa_multiflora	Rmu_sc0002363.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322320 Rroxscaffold_6G00390330
rosa_samantha	Rh3DG317400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	151
AluBI	AGCT	2 cut(s)	67, 107
AluI	AGCT	2 cut(s)	67, 107
ApeKI	GCWGC	2 cut(s)	75, 104
BbvI	GCAGC	2 cut(s)	62, 116
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	76, 105
BlsI	GCNGC	2 cut(s)	77, 106
BmsI	GCATC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	59, 148
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	59, 148
BseXI	GCAGC	2 cut(s)	62, 116
BsrI	ACTGG	2 cut(s)	59, 148
BssECI	CCNNGG	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	80, 84
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 182
BstNSI	RCATGY	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	62, 116
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	66, 70
Cac8I	GCNNGC	2 cut(s)	80, 84
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	67, 107, 125, 176
CviKI_1	RGCY	4 cut(s)	67, 107, 125, 176
CviQI	GTAC	1 cut(s)	150
FaeI	CATG	1 cut(s)	82
FaiI	YATR	1 cut(s)	80
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	76, 105
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	76, 105
GluI	GCNGC	2 cut(s)	76, 105
GsuI	CTGGAG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 182
Hsp92II	CATG	1 cut(s)	82
LpnPI	CCDG	2 cut(s)	72, 129
Lsp1109I	GCAGC	2 cut(s)	62, 116
LweI	GCATC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	66, 82
MseI	TTAA	3 cut(s)	21, 99, 111
MspA1I	CMGCKG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 182
NlaIII	CATG	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	112
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	77, 106
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	21, 99, 111
SatI	GCNGC	2 cut(s)	76, 105
SetI	ASST	2 cut(s)	69, 109
SfaNI	GCATC	1 cut(s)	82
SgeI	CNNG	8 cut(s)	25, 71, 91, 95, 100, 134, 139, 156
SphI	GCATGC	1 cut(s)	82
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	21, 99, 111
Tru9I	TTAA	3 cut(s)	21, 99, 111
TscAI	CASTG	2 cut(s)	66, 77
TseI	GCWGC	2 cut(s)	75, 104
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	66, 77
XceI	RCATGY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.