Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019268

Physical Location & Seq

Genomic Coordinates Forward (+)

34218821 .. 34222914

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG317400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTCACCTACCTCATTGAGCATGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGTATGCTTGCTGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAACAAAGCTGGCTAAATCATCAAATGGCAGCTCAGAGGCCTCACCTGTGGAGAAGGCTGCTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

61

Amino Acids

6.38

Weight (kDa)

7.9

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	8 - 43	8.8e-09	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019268)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171600.v1.1 MD13G1211600.v1.1 MD13G1211700.v1.1 MD14G1077900.v1.1
rosa_multiflora	Rmu_sc0002363.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322320 Rroxscaffold_6G00390330
rosa_samantha	Rh3DG317400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	4 cut(s)	61, 101, 124, 147
AluI	AGCT	4 cut(s)	61, 101, 124, 147
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	98, 144, 173
AsuHPI	GGTGA	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	110, 156, 160
BccI	CCATC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	67
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	3 cut(s)	99, 145, 174
BlsI	GCNGC	3 cut(s)	100, 146, 175
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	72, 162
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	110, 156, 160
BshFI	GGCC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	73, 161
BspMAI	CTGCAG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	78, 126
BstDEI	CTNAG	2 cut(s)	81, 148
BstF5I	GGATG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 179
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	110, 156, 160
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	78, 126
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	7 cut(s)	61, 101, 124, 128, 147, 155, 173
CviKI_1	RGCY	7 cut(s)	61, 101, 124, 128, 147, 155, 173
DdeI	CTNAG	2 cut(s)	81, 148
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	155
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 74
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	99, 145, 174
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	99, 145, 174
GluI	GCNGC	3 cut(s)	99, 145, 174
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 179
HpyF3I	CTNAG	2 cut(s)	81, 148
Hsp92II	CATG	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	66, 110, 174
Lsp1109I	GCAGC	3 cut(s)	110, 156, 160
LweI	GCATC	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	5 cut(s)	22, 60, 76, 145, 166
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 179
NlaIII	CATG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	3
PceI	AGGCCT	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	100, 146, 175
PstI	CTGCAG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	99, 145, 174
SetI	ASST	7 cut(s)	10, 14, 63, 103, 126, 149, 163
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	67
SgeI	CNNG	7 cut(s)	34, 65, 70, 89, 106, 137, 173
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	155
TasI	AATT	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	98, 144, 173
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.