Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019268

Physical Location & Seq

Genomic Coordinates Forward (+)

52535863 .. 52536651

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAGAGCCTCGGTCGGCCTCGTCAAGACCTTGAGAAGGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGTATGCTTGCTGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAACAAAGCTGGCTAAATCATCAAATGGCAGCTCGGAGGCCTCACCGTGGAGAAGGCTGCTAATGCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

67

Amino Acids

7.43

Weight (kDa)

10.01

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU_N	PF01592	12 - 48	4.8e-09	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019268)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171600.v1.1 MD13G1211600.v1.1 MD13G1211700.v1.1 MD14G1077900.v1.1
rosa_multiflora	Rmu_sc0002363.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322320 Rroxscaffold_6G00390330
rosa_samantha	Rh3DG317400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	36, 177
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	4 cut(s)	76, 116, 139, 162
AluI	AGCT	4 cut(s)	76, 116, 139, 162
AoxI	GGCC	2 cut(s)	16, 168
ApeKI	GCWGC	3 cut(s)	113, 159, 187
AsuHPI	GGTGA	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	125, 171, 174
BccI	CCATC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	114, 160, 188
BlsI	GCNGC	3 cut(s)	115, 161, 189
BmsI	GCATC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	9, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 177
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	9, 176
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	36, 177
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	125, 171, 174
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	18, 170
BsiEI	CGRYCG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	36, 177
BsnI	GGCC	2 cut(s)	18, 170
BspANI	GGCC	2 cut(s)	18, 170
BspCNI	CTCAG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	9, 176
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	93, 141
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 193
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	125, 171, 174
BsuRI	GGCC	2 cut(s)	18, 170
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	93, 141
CviJI	RGCY	9 cut(s)	8, 18, 76, 116, 139, 143, 162, 170, 187
CviKI_1	RGCY	9 cut(s)	8, 18, 76, 116, 139, 143, 162, 170, 187
DdeI	CTNAG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	34
FaiI	YATR	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	114, 160, 188
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	114, 160, 188
GluI	GCNGC	3 cut(s)	114, 160, 188
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	18, 170
HphI	GGTGA	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	30, 177
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 193
HpyF3I	CTNAG	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	81, 125
Lsp1109I	GCAGC	3 cut(s)	125, 171, 174
LweI	GCATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	6 cut(s)	19, 29, 75, 91, 160, 181
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 193
PceI	AGGCCT	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	115, 161, 189
PstI	CTGCAG	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	114, 160, 188
SetI	ASST	5 cut(s)	32, 78, 118, 141, 164
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	177
TasI	AATT	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	86
TseI	GCWGC	3 cut(s)	113, 159, 187
TspRI	CASTG	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.