Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Reverse (-)

21486729 .. 21487562

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1222000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGTATGAATGTTCCACAAAGACGAATTCTTTCAAATGTGGAAATGTTACAGCACCACCTACAATAGATTGGAGAAAGAAAGGAGCAGTAACACCTATCCAAGACCAAGGAATGTGTGTGGACCAAAGTTGTGAGGGTGGAACTTGTGGAACAAAGCTCGATCATGAGGTTACCACTGTTGGTTGTGGAGTTAGTGCTGATGAGACTAAGTACTGGTTAGTGAAGAACTCATGGGGCGCAGAATGGGATGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGAGACAAAAGGTGGTCTTTATGGCATTGCTGGGGAAGCCTCATACCCCACTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

114

Amino Acids

12.35

Weight (kDa)

4.69

Isoelectric Point (pI)

10.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	49 - 112	2.4e-16	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	215, 263
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	200, 281
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	200, 281
BmcAI	AGTACT	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	200, 281
BsmI	GAATGC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	200, 281
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	177
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	214, 262
CviAII	CATG	2 cut(s)	167, 234
CviJI	RGCY	2 cut(s)	160, 323
CviKI_1	RGCY	2 cut(s)	160, 323
CviQI	GTAC	2 cut(s)	214, 262
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	170, 237
FaiI	YATR	6 cut(s)	9, 168, 235, 266, 306, 328
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	2 cut(s)	166, 233
FokI	GGATG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	170, 237
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	170, 237
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	2 cut(s)	202, 300
MaeIII	GTNAC	3 cut(s)	49, 91, 172
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	238, 266
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	3 cut(s)	130, 163, 334
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	170, 237
PagI	TCATGA	1 cut(s)	166
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	215, 263
RsaNI	GTAC	2 cut(s)	214, 262
RseI	CAYNNNNRTG	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	215
SetI	ASST	5 cut(s)	64, 100, 162, 174, 298
SgeI	CNNG	8 cut(s)	116, 122, 159, 173, 179, 229, 246, 327
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	213
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	24, 267
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.