Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Reverse (-)

51510207 .. 51517992

Gene Structure 7786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAAGGAATTACTCAACTTACAACTGGAACCTGTGGAACGAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGCATCAGCGATGATGGGACTGAGTATTGGTTGGTTAAGAACTCATGGGGCGCAGAATGGGGAGAAGAAGGCTACATAAGAATGCAAAGAGAGGTTGCTTCACAGGAAGGTCTCTGTGGTATTGCTATGGAAGCCTCTTACCCCACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

75

Amino Acids

8.04

Weight (kDa)

4.12

Isoelectric Point (pI)

-0.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	3 - 74	1.7e-22	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	53, 120, 225
CviJI	RGCY	3 cut(s)	45, 147, 209
CviKI_1	RGCY	3 cut(s)	45, 147, 209
DdeI	CTNAG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	3 cut(s)	56, 123, 228
FaiI	YATR	6 cut(s)	54, 75, 121, 152, 203, 226
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	3 cut(s)	52, 119, 224
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	56, 123, 228
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	137, 176
HpyCH4V	TGCA	2 cut(s)	160, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	56, 123, 228
HspAI	GCGC	1 cut(s)	126
LpnPI	CCDG	3 cut(s)	12, 46, 164
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	9
MnlI	CCTC	2 cut(s)	160, 220
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	52
NlaIII	CATG	3 cut(s)	56, 123, 228
NlaIV	GGNNCC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	111
SetI	ASST	3 cut(s)	35, 171, 187
SfaNI	GCATC	1 cut(s)	87
SgeI	CNNG	7 cut(s)	39, 45, 54, 59, 65, 132, 191
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	52
TasI	AATT	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	226
TspRI	CASTG	1 cut(s)	226
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.