Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Forward (+)

24189330 .. 24190436

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTCGTTATGGACGTGTCTATGAAGAGATCAACGAGAAGGAGAAGCGCTTCCTAATATTTAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAAATGAAGAGTTCATTGCCTTGAGAAATCGATTCAAGGGTCATGAATGTTCCAGAAAGACCACTTCTTTCAAGTATGAAAATGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGTAACCCCAGTCAAGGATCAAGGCCAATGTGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGAGTCAGTGATGATGGGACTAAGTATTGGTTGGTCAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAAGTCTGTGTGGTATTGCTATGGCAGCCTCTTACCCCACTCATCCTTCCACCATCTGGTTCCATTATAAAAGTTCACTTCGCATTGTGTCATTCCACTCCAACTCCCCAAGTCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

192

Amino Acids

21.65

Weight (kDa)

8.29

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	1 - 54	6.5e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	80 - 104	2.1e-06	Papain family cysteine protease
Peptidase_C1	PF00112	104 - 166	2.3e-20	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	513
AclWI	GGATC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	425
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	286, 513
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	184, 220
AjiI	CACGTC	1 cut(s)	17
AluBI	AGCT	2 cut(s)	245, 272
AluI	AGCT	2 cut(s)	245, 272
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	50
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	449, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	436, 494
BccI	CCATC	2 cut(s)	359, 518
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	2 cut(s)	450, 483
BlsI	GCNGC	2 cut(s)	451, 484
BmgBI	CACGTC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	518
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 513
Bse1I	ACTGG	2 cut(s)	260, 281
Bse3DI	GCAATG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	89, 499
BseLI	CCNNNNNNNGG	2 cut(s)	286, 513
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	260, 281
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	436, 494
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	286, 513
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	30, 289
Bsp19I	CCATGG	1 cut(s)	328
BspANI	GGCC	1 cut(s)	297
BspDI	ATCGAT	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	518
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	260, 281
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	30, 289
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	238, 250
Bst6I	CTCTTC	2 cut(s)	21, 150
BstC8I	GCNNGC	2 cut(s)	106, 243
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	89, 499
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	33, 292
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	30, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	436, 494
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	89, 499
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	106, 243
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	191, 329, 396
CviJI	RGCY	6 cut(s)	5, 245, 272, 297, 321, 485
CviKI_1	RGCY	6 cut(s)	5, 245, 272, 297, 321, 485
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	32, 291
DpnII	GATC	2 cut(s)	30, 289
Eam1104I	CTCTTC	2 cut(s)	21, 150
EarI	CTCTTC	2 cut(s)	21, 150
Eco130I	CCWWGG	1 cut(s)	328
Eco47III	AGCGCT	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	3 cut(s)	194, 332, 399
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	190, 328, 395
Fnu4HI	GCNGC	2 cut(s)	450, 483
FokI	GGATG	2 cut(s)	76, 486
Fsp4HI	GCNGC	2 cut(s)	450, 483
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	450, 483
GsuI	CTGGAG	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	194, 332, 399
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	86, 180, 354
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	253, 533
Hpy188III	TCNNGA	3 cut(s)	191, 201, 388
Hpy8I	GTNNAC	2 cut(s)	253, 533
HpyAV	CCTTC	3 cut(s)	34, 413, 513
HpyCH4III	ACNGT	2 cut(s)	238, 250
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	104, 140, 436, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	194, 332, 399
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	30, 289
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	6 cut(s)	214, 241, 255, 294, 440, 499
Lsp1109I	GCAGC	2 cut(s)	436, 494
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	3 cut(s)	232, 274, 334
MalI	GATC	2 cut(s)	32, 291
MboI	GATC	2 cut(s)	30, 289
MboII	GAAGA	3 cut(s)	38, 167, 428
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	2 cut(s)	119, 134
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	2 cut(s)	63, 122
MslI	CAYNNNNRTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	30, 289
NlaIII	CATG	3 cut(s)	194, 332, 399
NlaIV	GGNNCC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	86, 180
PflMI	CCANNNNNTGG	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	451, 484
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	63, 122
SatI	GCNGC	2 cut(s)	450, 483
Sau3AI	GATC	2 cut(s)	30, 289
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	5 cut(s)	19, 115, 147, 247, 274
SfaNI	GCATC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	119, 134
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	238, 250
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	119, 134
TfiI	GAWTC	2 cut(s)	86, 180
Tru1I	TTAA	2 cut(s)	63, 122
Tru9I	TTAA	2 cut(s)	63, 122
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	2 cut(s)	449, 482
TspDTI	ATGAA	5 cut(s)	39, 151, 168, 207, 240
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.