Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Reverse (-)

7125587 .. 7125838

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29154

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCAAGTGGATCCGCGTTTCAGTTTTATTCGAGTACGTGGTGTGTTTACTGGAACCTGTGGTACCAACTTAGACCATGGTGTTGCCGTGGTTGGGTACGGGACTAGTAGTGATGGGACTAAGTATTGGCTGGTGAAGAATTCTTGGGGAACAGGATGGGGAGAGAGCGGATATGTAAGGATGCAAAGGGATGTTCCTGCCATGGAAGGACTCTGTGGAATTGCTATGAACGCTTCTTATCCGACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

83

Amino Acids

8.97

Weight (kDa)

7.8

Isoelectric Point (pI)

-3.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	13 - 82	2.2e-23	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	16
AciI	CCGC	3 cut(s)	14, 168, 246
AclWI	GGATC	2 cut(s)	5, 18
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	3 cut(s)	36, 64, 98
AfiI	CCNNNNNNNGG	1 cut(s)	93
AhlI	ACTAGT	1 cut(s)	104
AlwI	GGATC	2 cut(s)	5, 18
ApoI	RAATTY	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	62
BccI	CCATC	2 cut(s)	107, 150
BceAI	ACGGC	1 cut(s)	71
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
BmiI	GGNNCC	3 cut(s)	12, 55, 64
BmsI	GCATC	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	76, 87, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	3 cut(s)	76, 87, 201
BseGI	GGATG	3 cut(s)	161, 186, 196
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	246
BslFI	GGGAC	2 cut(s)	115, 130
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	115, 130
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	2 cut(s)	76, 201
BspACI	CCGC	3 cut(s)	14, 168, 246
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	3 cut(s)	12, 55, 64
BspPI	GGATC	2 cut(s)	5, 18
BspT107I	GGYRCC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	76, 87, 201
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	76, 201
BstBAI	YACGTR	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	70, 120
BstDSI	CCRYGG	3 cut(s)	76, 87, 201
BstF5I	GGATG	3 cut(s)	161, 186, 196
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtgI	CCRYGG	3 cut(s)	76, 87, 201
BtsCI	GGATG	3 cut(s)	161, 186, 196
Csp6I	GTAC	3 cut(s)	35, 63, 97
CviAII	CATG	3 cut(s)	77, 202, 249
CviJI	RGCY	1 cut(s)	130
CviKI_1	RGCY	1 cut(s)	130
CviQI	GTAC	3 cut(s)	35, 63, 97
DdeI	CTNAG	2 cut(s)	70, 120
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	76, 201
EcoRI	GAATTC	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	76, 201
ErhI	CCWWGG	2 cut(s)	76, 201
FaeI	CATG	3 cut(s)	80, 205, 252
FaiI	YATR	5 cut(s)	78, 174, 203, 227, 250
FaqI	GGGAC	2 cut(s)	115, 130
FatI	CATG	3 cut(s)	76, 201, 248
FokI	GGATG	3 cut(s)	168, 193, 203
FspBI	CTAG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	80, 205, 252
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	4, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	70, 120
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	3 cut(s)	80, 205, 252
KpnI	GGTACC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	36, 70, 116, 138, 210
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	139, 219
MlyI	GAGTC	1 cut(s)	204
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	2 cut(s)	76, 201
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	80, 205, 252
NlaIV	GGNNCC	3 cut(s)	12, 55, 64
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	12, 55, 64
PsrI	GAACNNNNNNTAC	2 cut(s)	46, 78
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	36, 64, 98
RsaNI	GTAC	3 cut(s)	35, 63, 97
Sau3AI	GATC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	204
SetI	ASST	2 cut(s)	40, 59
SfaNI	GCATC	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	2 cut(s)	139, 219
SsiI	CCGC	3 cut(s)	14, 168, 246
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	76, 201
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	139, 219
TspDTI	ATGAA	1 cut(s)	242
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.