Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002277.1

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Forward (+)

61022 .. 61369

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002277.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ctggtcaatcacgaagatgtgcttgcaaatagtgaaagtgcccttcttaaggtcgttgctaatgaacccatttctgttgccattgatgctagtagttcggatttccaattctattcaagtggtgttttcacaggaacttgtggaacaagcggtctgccattgatgataaaccatggtgttaccgcagtaggttatggcgttagcgatgatgggactaggtattggttggttaagaactcatggggggcacaatggggtgaagaagggtacataagaatgcaaagagatgttgctgagaaggaaggcctgtgtggtattgctatggcagcctcttatcccactacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

115

Amino Acids

12.24

Weight (kDa)

4.49

Isoelectric Point (pI)

15.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 183
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	117
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	2 cut(s)	43, 250
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	90, 216
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmsI	GCATC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	285
BseSI	GKGCMC	2 cut(s)	43, 250
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	43, 250
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	2 cut(s)	150, 183
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 326
BstSLI	GKGCMC	2 cut(s)	43, 250
BstV1I	GCAGC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	173, 240
CviJI	RGCY	2 cut(s)	306, 329
CviKI_1	RGCY	2 cut(s)	306, 329
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	176, 243
FaiI	YATR	6 cut(s)	174, 195, 241, 272, 323, 346
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	172, 239
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	90, 216
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	176, 243
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	53, 257, 292, 296
HpyCH4V	TGCA	2 cut(s)	26, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 326
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	176, 243
LpnPI	CCDG	2 cut(s)	117, 320
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	90, 216
MaeIII	GTNAC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	26, 272
MhlI	GDGCHC	2 cut(s)	43, 250
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	1 cut(s)	340
MseI	TTAA	2 cut(s)	48, 231
MslI	CAYNNNNRTG	2 cut(s)	15, 275
MspCI	CTTAAG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	86, 326
NcoI	CCATGG	1 cut(s)	172
NlaIII	CATG	2 cut(s)	176, 243
PceI	AGGCCT	1 cut(s)	306
PctI	GAATGC	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	328
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	15, 275
SaqAI	TTAA	2 cut(s)	48, 231
SatI	GCNGC	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	43, 250
SetI	ASST	3 cut(s)	54, 193, 221
SfaNI	GCATC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	15, 275
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	2 cut(s)	150, 183
SspMI	CTAG	2 cut(s)	90, 216
StuI	AGGCCT	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	172
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	48, 231
Tru9I	TTAA	2 cut(s)	48, 231
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	90, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.