Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Forward (+)

31419898 .. 31420074

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49189

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGTGTTACAGCAGTTGCCTGCGGTGTAAGTGGTGATGGGACAAAGTACTGGTTGGTGAAGAACTCATGGGGTACACAATGGGGTGAACAAGGGTACATAAGGATGCAAAGGGATGTCGATGCAGCGGAAGGCCTTTGCGGCATTCCTATGGCAGCCTCTTACCCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

58

Amino Acids

6.16

Weight (kDa)

4.86

Isoelectric Point (pI)

5.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	2 - 57	4.7e-16	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 128, 141
AfaI	GTAC	3 cut(s)	50, 76, 98
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	125, 155
AsuHPI	GGTGA	3 cut(s)	47, 70, 98
BbvI	GCAGC	2 cut(s)	137, 167
BccI	CCATC	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	126, 142, 156
BlsI	GCNGC	3 cut(s)	127, 143, 157
BmcAI	AGTACT	1 cut(s)	50
BmsI	GCATC	2 cut(s)	96, 112
Bse1I	ACTGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	111, 121
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	137, 167
BshFI	GGCC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	135
BspACI	CCGC	3 cut(s)	24, 128, 141
BspANI	GGCC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	111, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	137, 167
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	111, 121
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	49, 75, 97
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	2 cut(s)	135, 158
CviKI_1	RGCY	2 cut(s)	135, 158
CviQI	GTAC	3 cut(s)	49, 75, 97
Eco147I	AGGCCT	1 cut(s)	135
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	70, 101, 152, 175
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	126, 142, 156
FokI	GGATG	2 cut(s)	118, 128
Fsp4HI	GCNGC	3 cut(s)	126, 142, 156
GluI	GCNGC	3 cut(s)	126, 142, 156
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	47, 70, 98
Hpy166II	GTNNAC	2 cut(s)	77, 89
Hpy8I	GTNNAC	2 cut(s)	77, 89
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	109, 125, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	72
LpnPI	CCDG	2 cut(s)	34, 37
Lsp1109I	GCAGC	2 cut(s)	137, 167
LweI	GCATC	2 cut(s)	96, 112
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	73
MnlI	CCTC	1 cut(s)	169
MslI	CAYNNNNRTG	2 cut(s)	104, 149
MspA1I	CMGCKG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	127, 143, 157
RsaI	GTAC	3 cut(s)	50, 76, 98
RsaNI	GTAC	3 cut(s)	49, 75, 97
RseI	CAYNNNNRTG	2 cut(s)	104, 149
SatI	GCNGC	3 cut(s)	126, 142, 156
ScaI	AGTACT	1 cut(s)	50
SfaNI	GCATC	2 cut(s)	96, 112
SgeI	CNNG	4 cut(s)	33, 64, 81, 104
SmiMI	CAYNNNNRTG	2 cut(s)	104, 149
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	3 cut(s)	24, 128, 141
StuI	AGGCCT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	120
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	125, 155
TspRI	CASTG	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.