MD13G1234900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012012
Physical Location & Seq
Forward (+)
23613334 .. 23615584
2251 bp
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UTR
Exon/CDS
Intron
MD13G1234900.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGGGGGAGGAATGGAAGCAAACAAGAACAAGTTCATAGAGGAGTGGGGATCCGTCAGAGAAAATCTCGAGTACAACTTCCGCTGGACTCGCCGCAACTTCGCCCTCGTTGGCATCTTCGGCATCGCCCTCCCTATCTTGGTTTACAAGGGCATTGTCAGAGACTTCCACATGCAAGATGAGGATGCAGGCAGACCATACAGGAAGTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.37

Weight (kDa)

9.22

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31490
fragaria_vesca FvH4_4g06270
malus_domestica MD13G1234900.v1.1 MD16G1239700.v1.1
prunus_persica Prupe.1G065800_v2.0.a1
pyrus_communis pycom16g20070
rosa_chinensis RchiOBHm_Chr4g0397991 RchiOBHm_Chr6g0293611
rosa_multiflora Rmu_sc0003773.1_g000025
rosa_roxburghii Rroxscaffold_5G00342950
rosa_rugosa Rorug04G0005100
rosa_samantha Rh4AG081800 Rh4BG079500 Rh4CG089300 Rh4DG074900 Rh6CG363700 Rh6DG350700
rosa_wichuraiana Rw0G019330 Rw4G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 94
AclWI GGATC 2 cut(s) 45, 58
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 45, 58
Ama87I CYCGRG 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 68
BamHI GGATCC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 156
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 3 cut(s) 123, 132, 175
BplI GAGNNNNNCTC 2 cut(s) 51, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 2 cut(s) 82, 94
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 45, 58
BssMI GATC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 90, 120
BstNSI RCATGY 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 172
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 68
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 38, 173, 199, 214
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 59, 161
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 175, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 120
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 70, 174, 187
LweI GCATC 3 cut(s) 123, 132, 175
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 50
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 4 cut(s) 34, 116, 140, 175
MroXI GAANNNNTTC 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 90, 120
NdeII GATC 1 cut(s) 50
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 82
SfaNI GCATC 3 cut(s) 123, 132, 175
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SsiI CCGC 2 cut(s) 82, 94
TaqI TCGA 1 cut(s) 69
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.