Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009204

Physical Location & Seq

Genomic Coordinates Reverse (-)

928446 .. 930305

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGAACATGATCAGCATGCTGCCTGTGGAGTGCATCTCCCACATCATTTCCCTTACATCCCCTTGCGATGCCTGCAGATCATCTCTAGTTTCTTCTGTCTTCAGAGAAGCTGCGGATTCGGATTTTGTATGGAAAAGCTTTTTGCCTCAAGATATTAAGCAAATCATTTCTAAATCCTTGTTGCCATCGCCATCATCCTTGAATTCCATCTCCATGAAGGATCTCTACTTCCATCTTCGAATTCACCACCAACACATAATTTTAGATGGTAACATGAGCTTTGCACTAGAAGACAAGAGTGGAAAGAAATGTTATATGATAGGGGCAAGAGGGCTTTCAATTGCAGGGGAAGAAGACAAACTCGGTTATTGGCAATGGACAACCGTACCAGCATCTAGGTTTTGTGAAGTGGCTGAGCTGAAAAATGTATTGGGGCTTGACATCAAGGCACATATCAAAACTAGAATGTTGTCTCCGGGTACAACCTATGCGGCTTACTTTGTCTATCAGCTCTTAGGATGCAGATTTGGGTTTGCACAAACGCCAATTGAGTTTCGTGTCACTTGGGAACAAAGCCGAGTAGAAGCGTCTTACCATGGGGTATGCCTAGAACGTGTGGTGCTAGACCCGTCCGCAGCGTCTCCACGAGCTCAATATAGAGGAGATGGGTGGATGGAGGTGGAGATGGGTGAGTTCTTCATCAAAGAAGGAGATAATGCTACTGTGGAGTGTAGTGTGAGGGAAGTTAATGGCACTAAGAGCGGCCTCCTTGTGGAAGGCATTGAGATTAGGCCTAAACTAGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

Tom7

Protein Analysis

270

Amino Acids

30.29

Weight (kDa)

6.18

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 46	2.9e-06	F-box domain
F-box-like	PF12937	6 - 48	1.7e-07	F-box-like
PP2	PF14299	103 - 266	6.9e-43	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64220 AT5G41685
fragaria_vesca	FvH4_4g06260
malus_domestica	MD06G1130200.v1.1 MD12G1085900.v1.1 MD13G1234800.v1.1 MD15G1094200.v1.1 MD16G1239600.v1.1
prunus_persica	Prupe.1G065700_v2.0.a1
pyrus_communis	pycom13g20680
rosa_chinensis	RchiOBHm_Chr4g0397981
rosa_multiflora	Rmu_sc0001074.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342940
rosa_rugosa	Rorug04G0005100
rosa_samantha	Rh4BG079400 Rh4CG089200 Rh4CG199400 Rh4DG074800 Rh4DG185600
rosa_wichuraiana	Rw0G019350 Rw4G006800 Rw4G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	765
AciI	CCGC	4 cut(s)	116, 494, 636, 765
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	205, 243
AcuI	CTGAAG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	390, 484
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	2 cut(s)	205, 342
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	6 cut(s)	113, 141, 282, 421, 514, 653
AluI	AGCT	6 cut(s)	113, 141, 282, 421, 514, 653
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	480, 648
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	766, 794
ApeKI	GCWGC	3 cut(s)	22, 113, 638
ApoI	RAATTY	2 cut(s)	205, 243
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	239, 704
AsuII	TTCGAA	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanII	GRGCYC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	3 cut(s)	94, 300, 363
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	3 cut(s)	9, 100, 650
BccI	CCATC	8 cut(s)	196, 202, 218, 243, 263, 662, 670, 682
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	480, 648
BfaI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	5 cut(s)	24, 115, 496, 640, 767
Bme1390I	CCNGG	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	4 cut(s)	45, 61, 404, 512
BpiI	GAAGAC	3 cut(s)	94, 300, 363
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu1102I	GCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse3DI	GCAATG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	4 cut(s)	59, 197, 527, 681
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	9, 100, 650
BshFI	GGCC	2 cut(s)	768, 796
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	2 cut(s)	480, 648
BsmBI	CGTCTC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	768, 796
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	12, 80, 223
Bsp1720I	GCTNAGC	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	4 cut(s)	116, 494, 636, 765
BspANI	GGCC	2 cut(s)	768, 796
BspCNI	CTCAG	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	3 cut(s)	12, 80, 223
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	2 cut(s)	388, 727
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	20, 76
BstDEI	CTNAG	3 cut(s)	417, 517, 759
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	4 cut(s)	59, 197, 527, 681
BstKTI	GATC	3 cut(s)	15, 83, 226
BstMAI	GTCTC	2 cut(s)	480, 648
BstMBI	GATC	3 cut(s)	12, 80, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 762
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	9, 100, 650
BstV2I	GAAGAC	3 cut(s)	94, 300, 363
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	768, 796
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	2 cut(s)	84, 174
BtsCI	GGATG	4 cut(s)	59, 197, 527, 681
Cac8I	GCNNGC	2 cut(s)	20, 76
CseI	GACGC	2 cut(s)	579, 630
Csp6I	GTAC	2 cut(s)	389, 483
CviAII	CATG	5 cut(s)	10, 19, 217, 277, 599
CviQI	GTAC	2 cut(s)	389, 483
DdeI	CTNAG	3 cut(s)	417, 517, 759
DpnI	GATC	3 cut(s)	14, 82, 225
DpnII	GATC	3 cut(s)	12, 80, 223
Ecl136II	GAGCTC	1 cut(s)	653
Eco130I	CCWWGG	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	653
EcoRI	GAATTC	2 cut(s)	205, 243
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	5 cut(s)	13, 22, 220, 280, 602
FatI	CATG	5 cut(s)	9, 18, 216, 276, 598
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
FokI	GGATG	4 cut(s)	46, 184, 534, 688
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
FspBI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
GluI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
HaeIII	GGCC	2 cut(s)	768, 796
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	2 cut(s)	579, 630
Hin1II	CATG	5 cut(s)	13, 22, 220, 280, 602
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	239, 704
Hpy188I	TCNGA	2 cut(s)	107, 124
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	214, 704, 773
HpyCH4III	ACNGT	2 cut(s)	388, 727
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	6 cut(s)	36, 78, 287, 347, 525, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 762
HpyF3I	CTNAG	3 cut(s)	417, 517, 759
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	5 cut(s)	13, 22, 220, 280, 602
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 80, 223
LpnPI	CCDG	5 cut(s)	39, 88, 333, 405, 492
Lsp1109I	GCAGC	3 cut(s)	9, 100, 650
LweI	GCATC	4 cut(s)	45, 61, 404, 512
MaeI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	272, 562
MalI	GATC	3 cut(s)	14, 82, 225
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	3 cut(s)	12, 80, 223
MboII	GAAGA	8 cut(s)	16, 87, 94, 230, 305, 365, 368, 691
MfeI	CAATTG	2 cut(s)	342, 549
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	5 cut(s)	205, 243, 261, 342, 549
MnlI	CCTC	6 cut(s)	159, 326, 656, 673, 735, 779
MseI	TTAA	2 cut(s)	159, 750
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	2 cut(s)	342, 549
MwoI	GCNNNNNNNGC	2 cut(s)	75, 762
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	3 cut(s)	12, 80, 223
NlaIII	CATG	5 cut(s)	13, 22, 220, 280, 602
NmeAIII	GCCGAG	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	24, 115, 496, 640, 767
Psp124BI	GAGCTC	1 cut(s)	655
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	390, 484
RsaNI	GTAC	2 cut(s)	389, 483
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	2 cut(s)	159, 750
SatI	GCNGC	5 cut(s)	23, 114, 495, 639, 766
Sau3AI	GATC	3 cut(s)	12, 80, 223
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	4 cut(s)	45, 61, 404, 512
SfcI	CTRYAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	5 cut(s)	205, 243, 261, 342, 549
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	4 cut(s)	116, 494, 636, 765
SspMI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803
SstI	GAGCTC	1 cut(s)	655
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	388, 727
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	241
TasI	AATT	5 cut(s)	205, 243, 261, 342, 549
TauI	GCSGC	2 cut(s)	497, 768
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	159, 750
Tru9I	TTAA	2 cut(s)	159, 750
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	3 cut(s)	22, 113, 638
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	17, 233, 691
XapI	RAATTY	2 cut(s)	205, 243
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	7 cut(s)	89, 290, 399, 465, 611, 626, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.