Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009204

Physical Location & Seq

Genomic Coordinates Forward (+)

6607861 .. 6608082

Gene Structure 222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1094200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGTTGAGAATATCTCTGAAGAGCAAGGGCAAGACTCCGGCGAAACCTTCCAAGGGCTCGGATGAGCACTCGGTGGCTCAATCCTTCAAGGAGTGGAGCACGTGGGCCCTAAAGAAGGCTAAGGTCGTCACCCACTACGGCTTCATTCCCCTAGTCATCATCATCGGCATGAACTTGGAACCCAAGTCGCAACTCTCCCAACTTATCAGCCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

Tom7

Protein Analysis

74

Amino Acids

8.03

Weight (kDa)

10.08

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom7	PF08038	31 - 69	1.3e-15	TOM7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64220 AT5G41685
fragaria_vesca	FvH4_4g06260
malus_domestica	MD06G1130200.v1.1 MD12G1085900.v1.1 MD13G1234800.v1.1 MD15G1094200.v1.1 MD16G1239600.v1.1
prunus_persica	Prupe.1G065700_v2.0.a1
pyrus_communis	pycom13g20680
rosa_chinensis	RchiOBHm_Chr4g0397981
rosa_multiflora	Rmu_sc0001074.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342940
rosa_rugosa	Rorug04G0005100
rosa_samantha	Rh4BG079400 Rh4CG089200 Rh4CG199400 Rh4DG074800 Rh4DG185600
rosa_wichuraiana	Rw0G019350 Rw4G006800 Rw4G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	41
AcvI	CACGTG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	56, 118
AgsI	TTSAA	1 cut(s)	91
Alw21I	GWGCWC	2 cut(s)	72, 104
AoxI	GGCC	1 cut(s)	108
ApaI	GGGCCC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	108, 109
AsuHPI	GGTGA	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	62, 112
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	72, 104
BceAI	ACGGC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	108, 109
BmiI	GGNNCC	2 cut(s)	110, 183
BplI	GAGNNNNNCTC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 118
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	56, 118
BseSI	GKGCMC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	72, 104
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	56, 118
BsnI	GGCC	1 cut(s)	110
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	4 cut(s)	62, 72, 104, 112
BspANI	GGCC	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	110, 183
BspQI	GCTCTTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	108, 109
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	60, 80, 110, 122, 144, 213
CviKI_1	RGCY	6 cut(s)	60, 80, 110, 122, 144, 213
DdeI	CTNAG	1 cut(s)	123
DraIII	CACNNNGTG	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	62, 112
Eco57I	CTGAAG	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	62, 112
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FatI	CATG	1 cut(s)	171
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	62, 112
FspBI	CTAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	21, 64, 221
HpyAV	CCTTC	3 cut(s)	60, 97, 112
HpyCH4IV	ACGT	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	1 cut(s)	54
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	4 cut(s)	62, 72, 104, 112
MlyI	GAGTC	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	110, 183
NmuCI	GTSAC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	31
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	105
PspCI	CACGTG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	110, 183
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	108, 109
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	108, 109
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	4 cut(s)	62, 72, 104, 112
SetI	ASST	3 cut(s)	52, 107, 129
SmiMI	CAYNNNNRTG	1 cut(s)	170
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	136, 188
XagI	CCTNNNNNAGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.