Rw4G015980

Mitochondrial import receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009204
Physical Location & Seq
Reverse (-)
36739774 .. 36739995
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015980.1

Sequence Viewer

Length: 222 bp
ATGGTGTCGAGGGTTAGCTTGAAGAGCAAGGGCAAGACGACGAACAAGGGCTCTAAGGCTCCCGACGACCGGTCAATTTCTCCGGCCGTCAAGGAGTGGACCTCCTGGACCATGAAGAAGGCCAAGGTCATCACGCACTACTGTTTCATTCCTTTCATCATCGTCATCGGGATGAACTCCGAACCCAAGCCCCAACTTTCTCAGCACCTCAGCCCCGTCTGA

Protein Analysis

73

Amino Acids

8.14

Weight (kDa)

10.09

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tom7 PF08038 31 - 68 7.2e-17 TOM7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 69
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AoxI GGCC 2 cut(s) 84, 120
AsiGI ACCGGT 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 99, 108
AvaII GGWCC 2 cut(s) 99, 108
BanII GRGCYC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 99, 108
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 99, 108
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu10I CCTNAGC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 69
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 84
Bsh1285I CGRYCG 2 cut(s) 70, 87
BshFI GGCC 2 cut(s) 86, 122
BshTI ACCGGT 1 cut(s) 69
BsiEI CGRYCG 2 cut(s) 70, 87
BsiSI CCGG 2 cut(s) 70, 83
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 2 cut(s) 86, 122
Bsp1286I GDGCHC 1 cut(s) 53
BspANI GGCC 2 cut(s) 86, 122
BspCNI CTCAG 2 cut(s) 214, 222
BspLI GGNNCC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 54, 201, 209
BstF5I GGATG 1 cut(s) 177
BstMCI CGRYCG 2 cut(s) 70, 87
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 86, 122
BtsCI GGATG 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 99, 108
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 1 cut(s) 112
CviJI RGCY 7 cut(s) 18, 51, 59, 86, 122, 190, 213
CviKI_1 RGCY 7 cut(s) 18, 51, 59, 86, 122, 190, 213
DdeI CTNAG 3 cut(s) 54, 201, 209
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 99, 108
Eco52I CGGCCG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 86, 122
HapII CCGG 2 cut(s) 70, 83
Hin1II CATG 1 cut(s) 115
HpaII CCGG 2 cut(s) 70, 83
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 181, 221
Hpy188III TCNNGA 2 cut(s) 62, 169
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 43, 68
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 3 cut(s) 54, 201, 209
Hsp92II CATG 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 83, 91, 96, 118
MboII GAAGA 2 cut(s) 34, 127
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 75
MnlI CCTC 3 cut(s) 3, 112, 218
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 2 cut(s) 70, 83
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 24
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 99, 108
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 17
Sau96I GGNCC 2 cut(s) 99, 108
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 20, 104, 129, 210
SinI GGWCC 2 cut(s) 99, 108
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 75
TspDTI ATGAA 4 cut(s) 128, 136, 145, 188
VpaK11BI GGWCC 2 cut(s) 99, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.