AT5G41685

TOM7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009204
Physical Location & Seq
Reverse (-)
16669149 .. 16669723
575 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41685.1

Sequence Viewer

Length: 228 bp
ATGGAGTCTACAATATCGTTGAAGGTCAACAAAGGAAAAGGCAAAGGATCAAAGGGAGCTTCCTCTTCCGATGACAAATCCAAGTTTGATGTCGTTAAGGAATGGACCAATTGGTCATTGAAGAAGGCTAAAGTCGTCACTCACTATGGCTTCATCCCTCTGGTCATCTTCGTCGGCATGAACTCCGATCCCAAACCTCATCTCTTCCAGCTCCTTAGCCCTGTCTGA

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

9.8

Isoelectric Point (pI)

10.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tom7 PF08038 33 - 72 3.6e-18 TOM7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 8
AclWI GGATC 2 cut(s) 55, 182
AgsI TTSAA 2 cut(s) 22, 121
AluBI AGCT 2 cut(s) 59, 211
AluI AGCT 2 cut(s) 59, 211
AlwI GGATC 2 cut(s) 55, 182
AspS9I GGNCC 1 cut(s) 105
AvaII GGWCC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 215
BseGI GGATG 1 cut(s) 153
Bsp143I GATC 2 cut(s) 47, 187
BspPI GGATC 2 cut(s) 55, 182
BssMI GATC 2 cut(s) 47, 187
Bst6I CTCTTC 2 cut(s) 70, 209
BstDEI CTNAG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 50, 190
BstMBI GATC 2 cut(s) 47, 187
BtsCI GGATG 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 1 cut(s) 178
CviJI RGCY 5 cut(s) 59, 128, 150, 211, 219
CviKI_1 RGCY 5 cut(s) 59, 128, 150, 211, 219
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 49, 189
DpnII GATC 2 cut(s) 47, 187
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 70, 209
EarI CTCTTC 2 cut(s) 70, 209
Eco47I GGWCC 1 cut(s) 105
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 147, 179
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 8
FokI GGATG 1 cut(s) 140
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 9, 28
Hpy188I TCNGA 3 cut(s) 70, 187, 227
Hpy8I GTNNAC 2 cut(s) 9, 28
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 16, 118
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 2 cut(s) 47, 187
LmnI GCTCC 2 cut(s) 56, 216
LpnPI CCDG 2 cut(s) 146, 221
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 49, 189
MboI GATC 2 cut(s) 47, 187
MboII GAAGA 4 cut(s) 57, 133, 160, 196
MfeI CAATTG 1 cut(s) 109
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 73, 168, 207
MseI TTAA 1 cut(s) 96
MunI CAATTG 1 cut(s) 109
NdeII GATC 2 cut(s) 47, 187
NlaIII CATG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 136
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 2 cut(s) 47, 187
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 27, 61, 199, 213
SgeI CNNG 4 cut(s) 94, 173, 190, 220
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 109
TasI AATT 1 cut(s) 109
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 142, 194
VpaK11BI GGWCC 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.