FvH4_4g06260

Mitochondrial import receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009204
Physical Location & Seq
Reverse (-)
5586852 .. 5589248
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06260.t1

Sequence Viewer

Length: 222 bp
ATGGCGTCGAGGGTTAGCTTGAAGACCAAGGGCAAGTCCACCGGCAAGGGCTCCAAGGGTTCCGACGAGCGGTCAATTACTCAGGCCGTCAAGGAGTGGACCAACTGGACCATGAAGAAGGCCAAGGTCGTCACTCACTATGGATTCATTCCTCTCATCATCATCATCGGGATGAACTCGGACCCCAAACCCCAACTCTCTCAGCTTCTCAGCCCCGTCTGA

Protein Analysis

74

Amino Acids

8.0

Weight (kDa)

10.24

Isoelectric Point (pI)

16.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tom7 PF08038 31 - 70 3.5e-19 TOM7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 18, 205
AluI AGCT 2 cut(s) 18, 205
AoxI GGCC 2 cut(s) 84, 120
AspS9I GGNCC 3 cut(s) 99, 108, 181
AvaII GGWCC 3 cut(s) 99, 108, 181
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 71
Bme18I GGWCC 3 cut(s) 99, 108, 181
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 99, 108, 181
BmiI GGNNCC 3 cut(s) 52, 61, 183
BpiI GAAGAC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 27, 54, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 27, 54, 123
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 95, 215
BseNI ACTGG 1 cut(s) 110
BshFI GGCC 2 cut(s) 86, 122
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 2 cut(s) 86, 122
Bsp1286I GDGCHC 1 cut(s) 53
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 86, 122
BspCNI CTCAG 3 cut(s) 94, 214, 222
BspLI GGNNCC 3 cut(s) 52, 61, 183
BsrBI CCGCTC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 27, 54, 123
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 27, 54, 123
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 81, 201, 209
BstF5I GGATG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 86, 122
BtsCI GGATG 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 99, 108, 181
CviAII CATG 1 cut(s) 112
CviJI RGCY 6 cut(s) 18, 51, 86, 122, 205, 213
CviKI_1 RGCY 6 cut(s) 18, 51, 86, 122, 205, 213
DdeI CTNAG 3 cut(s) 81, 201, 209
DriI GACNNNNNGTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 27, 54, 123
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 3 cut(s) 99, 108, 181
EcoT14I CCWWGG 3 cut(s) 27, 54, 123
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 3 cut(s) 27, 54, 123
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 113, 141
FatI CATG 1 cut(s) 111
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 86, 122
HapII CCGG 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 39, 99
Hpy188I TCNGA 3 cut(s) 64, 181, 221
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 39, 99
Hpy99I CGWCG 2 cut(s) 10, 68
HpyAV CCTTC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 81, 201, 209
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 3 cut(s) 55, 68, 91
MaeIII GTNAC 1 cut(s) 130
MbiI CCGCTC 1 cut(s) 70
MboII GAAGA 2 cut(s) 34, 127
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 3, 162
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 1 cut(s) 42
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 52, 61, 183
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 52, 61, 183
PspPI GGNCC 3 cut(s) 99, 108, 181
RseI CAYNNNNRTG 1 cut(s) 170
Sau96I GGNCC 3 cut(s) 99, 108, 181
SduI GDGCHC 1 cut(s) 53
SetI ASST 3 cut(s) 20, 129, 207
SinI GGWCC 3 cut(s) 99, 108, 181
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 70
StyI CCWWGG 3 cut(s) 27, 54, 123
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 75
TfiI GAWTC 1 cut(s) 144
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 128, 136, 188
VpaK11BI GGWCC 3 cut(s) 99, 108, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.