Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009204

Physical Location & Seq

Genomic Coordinates Reverse (-)

16851383 .. 16851604

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g20680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGTCGAAGATATCTCTGAAAACCAAGGGCAAGACTCCGGCGAAGGGCTCCAAGGGCTCGGAGGAGCGCTCGGTGGCTCAGTCCGTGAAGGAGTGGAGCACGTGGACCATGAAGAAGGCCAAGGTCGTCACCCACTACGGCTTCATTCCGCTGGTCATCATCATCGGCATGAACTCGGATCCCAAGCCGCAACTTTCCCAGCTGCTCAGCCCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

Tom7

Protein Analysis

74

Amino Acids

7.96

Weight (kDa)

10.14

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom7	PF08038	31 - 70	5.7e-19	TOM7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64220 AT5G41685
fragaria_vesca	FvH4_4g06260
malus_domestica	MD06G1130200.v1.1 MD12G1085900.v1.1 MD13G1234800.v1.1 MD15G1094200.v1.1 MD16G1239600.v1.1
prunus_persica	Prupe.1G065700_v2.0.a1
pyrus_communis	pycom13g20680
rosa_chinensis	RchiOBHm_Chr4g0397981
rosa_multiflora	Rmu_sc0001074.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342940
rosa_rugosa	Rorug04G0005100
rosa_samantha	Rh4BG079400 Rh4CG089200 Rh4CG199400 Rh4DG074800 Rh4DG185600
rosa_wichuraiana	Rw0G019350 Rw4G006800 Rw4G015980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	152, 191
AclWI	GGATC	2 cut(s)	176, 189
AcvI	CACGTG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	176, 189
Aor51HI	AGCGCT	1 cut(s)	71
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	53, 62
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	2 cut(s)	191, 206
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	2 cut(s)	192, 207
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	52, 183
BmrFI	CCNGG	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	27, 54, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	27, 54, 123
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	41, 215
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	3 cut(s)	53, 62, 104
Bsp143I	GATC	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	152, 191
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	94, 222
BspLI	GGNNCC	2 cut(s)	52, 183
BspPI	GGATC	2 cut(s)	176, 189
BssECI	CCNNGG	3 cut(s)	27, 54, 123
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	27, 54, 123
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	81, 209
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	108
CviAII	CATG	2 cut(s)	112, 172
CviJI	RGCY	8 cut(s)	51, 60, 80, 122, 144, 190, 205, 213
CviKI_1	RGCY	8 cut(s)	51, 60, 80, 122, 144, 190, 205, 213
DdeI	CTNAG	2 cut(s)	81, 209
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco130I	CCWWGG	3 cut(s)	27, 54, 123
Eco24I	GRGCYC	2 cut(s)	53, 62
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	3 cut(s)	27, 54, 123
EcoT38I	GRGCYC	2 cut(s)	53, 62
ErhI	CCWWGG	3 cut(s)	27, 54, 123
FaeI	CATG	2 cut(s)	115, 175
FaiI	YATR	2 cut(s)	113, 173
FatI	CATG	2 cut(s)	111, 171
Fnu4HI	GCNGC	2 cut(s)	191, 206
FriOI	GRGCYC	2 cut(s)	53, 62
Fsp4HI	GCNGC	2 cut(s)	191, 206
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	191, 206
GsaI	CCCAGC	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	41, 215
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	115, 175
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	41, 215
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	4 cut(s)	21, 64, 181, 221
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	40, 85, 112
HpyCH4IV	ACGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	81, 209
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	115, 175
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	56, 67, 99
LpnPI	CCDG	3 cut(s)	54, 140, 215
Lsp1109I	GCAGC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	22, 127
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	3 cut(s)	53, 62, 104
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	58
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	154, 205
MspI	CCGG	2 cut(s)	41, 215
MspR9I	CCNGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	115, 175
NlaIV	GGNNCC	2 cut(s)	52, 183
NmuCI	GTSAC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	192, 207
PleI	GAGTC	1 cut(s)	31
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	105
PspCI	CACGTG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	52, 183
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	2 cut(s)	191, 206
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	3 cut(s)	53, 62, 104
SetI	ASST	3 cut(s)	107, 129, 207
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	170
SsiI	CCGC	2 cut(s)	152, 191
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	3 cut(s)	27, 54, 123
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	8
TauI	GCSGC	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	128, 136, 188
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.