Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011551

Physical Location & Seq

Genomic Coordinates Forward (+)

23964120 .. 23968273

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1236300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGGAGAATCGCAGCAAAAGAAAAAGAAAGCCGGAATCCGACGACATTAGCGACGACACCGCCTTCGCCGTCGTGCTGGCCGCTCTCTCATCTCTGAACCCCAACTCCCTCCGACCCTTAATCAATAAATGCCTAAACAAACTCCACCACTCGATCACCGATCCCACCCTCTCTCTTCTCCCAACTCTCCTCACTTTCAACTCTCCTGCAATATCTCGCCGTGCCGCTGAGATGGTGGGGTCCGCCGCCCTGGAGTCCTTGGACATGAACCAGAGGATTGCTTCCGATGCTGACATAATCAATAGCTTGCTCTCCGCATTGGCCAGCTCCAACACTGGCGTCTCAGTGGCTGCCTGCAATGCCCTTCTGGATTTGTGCACAACTGGTTTCGGACGGCGTCGTTTGCTCGATTCCTATGCGCTTCCCAGGATTCTTTCTGGGTTTCTTCAGGTTCATAAATCTTTGGAAAATTCAGTGTCTTTTTGCTCTGTTTCTGTGGATAGTGGAGGAGTTATCGCACCAAAAATCGGGTTTAAGGGAGATGAACTTCCAGTGTTACTTCTTAGTGCTGCAGTTCTTCTCATCAATACCTGTAAAATTGAGCAATTGGAGAACATCCCAACAAACCTCTCTCATGTTTTTTTCGCCTTCATGAGAAATCTGTGGGTGAAAGTGCGGAATGAAATGGTGTTCGAAAGCCAATTAGAGTCCACCCAAGGGGGGCATTTACATATTAGCAACATTAGGATTAGTGATATAGCCGAAACCCTTTTTAGGCTTTCCATTTGTGCCTCTCAGCTTATCAAGCCTTTGCCTTTTCATGTGGTTGAAAGGGGTATATTTGGATTCTCTGAGTCTGGTTTTAAGGATTTCATATCAAATCAGTGGGAGGTGTCACCCTTTCTTGTGCGGCGTGGGCATCCAGAAGGGGATTTAGTTGAGGAGAATGATAGTTTTGGACCATTTGTACGATCTCTAAACACAACGGGAGCATTTCCTTCCTTTCTTTCTTCTATGCTTCCGAGGATGGTTTCTTGTCTTCCTATTGCTTCTGATGAATTTAACATCCTTACTTTCCTAGGGGAGGTGAAAAATAAATTGGGTTGCCCTCTAACCTACCAGCAGGACATTCGGGTTCTAAGAACAGACGGCCACCTAAAGAGGGAGGAACATTTTTTTCTGAACAGTTTGAACTCTTGTTGTACAAAGGATCCTCATTATCTTGGTGTCAAAGATGTTTTCAAATGTGAAGAAGCATACAAGGAAGGTTATACAGTTGCACTGCGTGGAATGGAGTTCCGCTTTGAGAGCGTTGCTGCTATTGCAGATGGATTGGCATCTCTTTTTGGTCAACCATCAATTGGTGCCAATATGTACTTGACACCCCCTGATTCTCAGGGTTTGGCTTGCCACTACGATGACCATTGTGTGTTTGTATGCCAACTTGTTGGGACTAAGAAATGGAGACTTTATCCTCAGTCAAATGTGCATTTACCTCGCTTGTATGATCCTCTTGATCGGCTACATGCTTCAGAAGTGCAGAGTTCACCAGCTGAATGCAAACAATTTTTGCTGAGAGAAGGTGATATTTTGTATATTCCCAGAGGTGTTCTCCATGAGGCATGCACCGAGAATGTTAGTTTTGATGGGTCTGATGGCAATTCCTTACACCTTACACTCGGTATTGAGGTTGAGCCTCCTTTTGAGTGGGAGGGATTTGTTCATGTTGCACTCTTCAGTTGGAACCAGAACCAAAAAAAAGCTCATAACCTTTCCGAGTATTCATCTGGAATTATTCATGATATATCTGTGAATTTGTTGCACGCTGCTATTGTGCTGATTGGCGATTCTGATTCTACCTTCCGGAAGGCTTGCTTGGTTGCTTCGGTTTTTTCGCAATCACATATCCATAATTGGCTTGATTTAAACCAGCGAATTATTTTCTGTCAGTTGATTGACAAAATTAAAATAGAGTCACAGTTCTTGAAAGTGTTCAGGAATGTAGAATTAGCAATTCAGAAAAGCGAAGATCCTTTCCAACGAATTAGATGGCTTGGGTTTCTTAATACGGAGGAGGAAAGCAGTCCAAATTGTGAACAGAATATGCATTTGATGGGGATGAAAAACTTGTTCACATTGTGCAGTCAACATAAAGGCAAGGTGGAAGCTACATTCCAGCAGCTAACATCTAGGTTTAGTAGTGAGGTGATATTTGATGATGCAATAGAAAGGTATAAGATACTGCTAGAGACATATAGAAGGGCCAGAAAGCAATATATGAATGGGATGGTTTCACTGCATTATGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032451 GO:0032452 GO:0032453 GO:0034720 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051213 GO:0051252 GO:0051253 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_4

Protein Analysis

771

Amino Acids

86.41

Weight (kDa)

6.07

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjC_2	PF08007	432 - 549	2.6e-21	JmjC domain
Cupin_8	PF13621	448 - 543	9.6e-06	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06530 FvH4_4g06530 FvH4_4g06530 FvH4_4g06530 FvH4_4g06530
malus_domestica	MD13G1236300.v1.1
prunus_persica	Prupe.1G068100_v2.0.a1 Prupe.1G068100_v2.0.a1
pyrus_communis	pycom13g20910
rosa_chinensis	RchiOBHm_Chr4g0398451
rosa_laevigata	RLG00000009361
rosa_multiflora	Rmu_ssc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_5G00343410
rosa_rugosa	Rorug04G0008000 Rorug04G0008100
rosa_samantha	Rh4AG086200 Rh4BG083100 Rh4CG094000 Rh4DG077900
rosa_wichuraiana	Rw4G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1364
AccB7I	CCANNNNNTGG	1 cut(s)	1361
AccBSI	CCGCTC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	1863
AciI	CCGC	9 cut(s)	60, 81, 225, 243, 246, 315, 676, 910, 1300
AclWI	GGATC	5 cut(s)	155, 1205, 1218, 1502, 2024
AcoI	YGGCCR	3 cut(s)	78, 321, 1150
AcsI	RAATTY	3 cut(s)	469, 1058, 1813
AcuI	CTGAAG	3 cut(s)	431, 1515, 1720
AcyI	GRCGYC	2 cut(s)	339, 397
AdeI	CACNNNGTG	2 cut(s)	1286, 2139
AfaI	GTAC	3 cut(s)	969, 1204, 1376
AfiI	CCNNNNNNNGG	7 cut(s)	527, 717, 720, 774, 1084, 1162, 1361
AgsI	TTSAA	5 cut(s)	199, 830, 1192, 1243, 1987
AjnI	CCWGG	2 cut(s)	249, 425
AjuI	GAANNNNNNNTTGG	4 cut(s)	1082, 1114, 1859, 1891
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	7 cut(s)	306, 327, 799, 1553, 1763, 2168, 2182
AluI	AGCT	7 cut(s)	306, 327, 799, 1553, 1763, 2168, 2182
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	346, 1459, 2243
Alw44I	GTGCAC	1 cut(s)	376
AlwI	GGATC	5 cut(s)	155, 1205, 1218, 1502, 2024
AlwNI	CAGNNNCTG	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	1863
AoxI	GGCC	4 cut(s)	78, 321, 1150, 2262
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	6 cut(s)	12, 350, 569, 1316, 1826, 2179
ApoI	RAATTY	3 cut(s)	469, 1058, 1813
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	1991
AspA2I	CCTAGG	1 cut(s)	1078
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	240, 959, 2262
AsuHPI	GGTGA	7 cut(s)	148, 679, 888, 1099, 1539, 1595, 2218
AsuII	TTCGAA	1 cut(s)	693
AvaII	GGWCC	2 cut(s)	240, 959
AvrII	CCTAGG	1 cut(s)	1078
BaeGI	GKGCMC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	1210
BanI	GGYRCC	1 cut(s)	1364
BbsI	GAAGAC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	6 cut(s)	24, 337, 556, 1303, 1813, 2191
BccI	CCATC	9 cut(s)	226, 1021, 1322, 1363, 1640, 1649, 2043, 2107, 2281
BceAI	ACGGC	4 cut(s)	53, 204, 410, 1165
BcgI	CGANNNNNNTGC	6 cut(s)	398, 432, 1112, 1146, 1478, 1512
BciT130I	CCWGG	2 cut(s)	251, 427
BcoDI	GTCTC	3 cut(s)	346, 1459, 2243
BfaI	CTAG	3 cut(s)	1079, 2190, 2246
BfmI	CTRYAG	1 cut(s)	570
BlnI	CCTAGG	1 cut(s)	1078
Bme1390I	CCNGG	2 cut(s)	251, 427
Bme18I	GGWCC	2 cut(s)	240, 959
BmgT120I	GGNCC	3 cut(s)	240, 959, 2262
BmiI	GGNNCC	4 cut(s)	241, 1212, 1366, 1745
BmrFI	CCNGG	2 cut(s)	251, 427
BmsI	GCATC	4 cut(s)	277, 928, 1346, 2209
BpiI	GAAGAC	1 cut(s)	1031
BplI	GAGNNNNNCTC	2 cut(s)	1596, 1628
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	1336
BsaHI	GRCGYC	2 cut(s)	339, 397
BsaJI	CCNNGG	6 cut(s)	249, 258, 425, 715, 1022, 1078
BsaWI	WCCGGW	1 cut(s)	1863
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	7 cut(s)	527, 717, 720, 774, 1084, 1162, 1361
Bse1I	ACTGG	3 cut(s)	340, 388, 551
Bse3DI	GCAATG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	1336
BseAI	TCCGGA	1 cut(s)	1863
BseBI	CCWGG	2 cut(s)	251, 427
BseDI	CCNNGG	6 cut(s)	249, 258, 425, 715, 1022, 1078
BseGI	GGATG	6 cut(s)	615, 919, 1032, 1065, 2124, 2292
BseJI	GATNNNNATC	1 cut(s)	1336
BseLI	CCNNNNNNNGG	7 cut(s)	527, 717, 720, 774, 1084, 1162, 1361
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	7 cut(s)	219, 357, 809, 843, 1409, 1490, 1565
BseNI	ACTGG	3 cut(s)	340, 388, 551
BseRI	GAGGAG	4 cut(s)	179, 522, 956, 2087
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	6 cut(s)	24, 337, 556, 1303, 1813, 2191
BsgI	GTGCAG	2 cut(s)	1559, 2161
BshFI	GGCC	4 cut(s)	80, 323, 1152, 2264
BshNI	GGYRCC	1 cut(s)	1364
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	32, 1864
BslFI	GGGAC	1 cut(s)	1465
BslI	CCNNNNNNNGG	7 cut(s)	527, 717, 720, 774, 1084, 1162, 1361
BsmAI	GTCTC	3 cut(s)	346, 1459, 2243
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	1465
BsmI	GAATGC	1 cut(s)	1562
BsnI	GGCC	4 cut(s)	80, 323, 1152, 2264
Bsp119I	TTCGAA	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp13I	TCCGGA	1 cut(s)	1863
Bsp1407I	TGTACA	1 cut(s)	1202
Bsp143I	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
BspACI	CCGC	9 cut(s)	60, 81, 225, 243, 246, 315, 676, 910, 1300
BspANI	GGCC	4 cut(s)	80, 323, 1152, 2264
BspCNI	CTCAG	7 cut(s)	220, 356, 808, 844, 1408, 1489, 1566
BspEI	TCCGGA	1 cut(s)	1863
BspHI	TCATGA	2 cut(s)	651, 1798
BspLI	GGNNCC	4 cut(s)	241, 1212, 1366, 1745
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	5 cut(s)	155, 1205, 1218, 1502, 2024
BspT104I	TTCGAA	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	1364
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	1202
BsrI	ACTGG	3 cut(s)	340, 388, 551
BssECI	CCNNGG	6 cut(s)	249, 258, 425, 715, 1022, 1078
BssMI	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
BssNI	GRCGYC	2 cut(s)	339, 397
BssT1I	CCWWGG	3 cut(s)	258, 715, 1078
Bst2UI	CCWGG	2 cut(s)	251, 427
Bst4CI	ACNGT	3 cut(s)	1187, 1276, 1980
Bst6I	CTCTTC	2 cut(s)	180, 1739
BstACI	GRCGYC	2 cut(s)	339, 397
BstAUI	TGTACA	1 cut(s)	1202
BstBI	TTCGAA	1 cut(s)	693
BstC8I	GCNNGC	8 cut(s)	78, 308, 325, 355, 1408, 1624, 1824, 1873
BstENI	CCTNNNNNAGG	1 cut(s)	1082
BstF5I	GGATG	6 cut(s)	615, 919, 1032, 1065, 2124, 2292
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	7 cut(s)	156, 163, 974, 1213, 1510, 1519, 2032
BstMAI	GTCTC	3 cut(s)	346, 1459, 2243
BstMBI	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 359, 403, 805, 916, 1308, 1322
BstNI	CCWGG	2 cut(s)	251, 427
BstNSI	RCATGY	2 cut(s)	1529, 1626
BstSCI	CCNGG	2 cut(s)	249, 425
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	6 cut(s)	24, 337, 556, 1303, 1813, 2191
BstV2I	GAAGAC	1 cut(s)	1031
BstX2I	RGATCY	2 cut(s)	1210, 2029
BstXI	CCANNNNNNTGG	1 cut(s)	1448
BstYI	RGATCY	2 cut(s)	1210, 2029
BsuRI	GGCC	4 cut(s)	80, 323, 1152, 2264
BtsCI	GGATG	6 cut(s)	615, 919, 1032, 1065, 2124, 2292
BtsI	GCAGTG	2 cut(s)	1280, 2294
BtsIMutI	CAGTG	7 cut(s)	333, 351, 480, 558, 890, 1280, 2294
Cac8I	GCNNGC	8 cut(s)	78, 308, 325, 355, 1408, 1624, 1824, 1873
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	2 cut(s)	651, 1798
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	240, 959, 2262
CseI	GACGC	2 cut(s)	328, 386
Csp6I	GTAC	3 cut(s)	968, 1203, 1375
CviAII	CATG	9 cut(s)	265, 635, 652, 821, 1526, 1616, 1623, 1724, 1799
CviQI	GTAC	3 cut(s)	968, 1203, 1375
DpnI	GATC	7 cut(s)	155, 162, 973, 1212, 1509, 1518, 2031
DpnII	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
DraI	TTTAAA	1 cut(s)	1926
DraIII	CACNNNGTG	2 cut(s)	1286, 2139
EaeI	YGGCCR	3 cut(s)	78, 321, 1150
Eam1104I	CTCTTC	2 cut(s)	180, 1739
EarI	CTCTTC	2 cut(s)	180, 1739
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	258, 715, 1078
Eco47I	GGWCC	2 cut(s)	240, 959
Eco57I	CTGAAG	3 cut(s)	431, 1515, 1720
EcoNI	CCTNNNNNAGG	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	249, 425
EcoT14I	CCWWGG	3 cut(s)	258, 715, 1078
EcoT22I	ATGCAT	1 cut(s)	2109
ErhI	CCWWGG	3 cut(s)	258, 715, 1078
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	9 cut(s)	268, 638, 655, 824, 1529, 1619, 1626, 1727, 1802
FalI	AAGNNNNNCTT	2 cut(s)	1859, 1891
FaqI	GGGAC	1 cut(s)	1465
FatI	CATG	9 cut(s)	264, 634, 651, 820, 1525, 1615, 1622, 1723, 1798
FokI	GGATG	6 cut(s)	602, 906, 1039, 1052, 2131, 2299
FspBI	CTAG	3 cut(s)	1079, 2190, 2246
GlaI	GCGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	80, 323, 1152, 2264
HapII	CCGG	2 cut(s)	32, 1864
HgaI	GACGC	2 cut(s)	328, 386
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	2 cut(s)	339, 397
Hin1II	CATG	9 cut(s)	268, 638, 655, 824, 1529, 1619, 1626, 1727, 1802
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	1352, 2147
HindII	GTYRAC	2 cut(s)	1352, 2147
HpaII	CCGG	2 cut(s)	32, 1864
HphI	GGTGA	7 cut(s)	148, 679, 888, 1099, 1539, 1595, 2218
Hpy166II	GTNNAC	7 cut(s)	378, 711, 1352, 1547, 2096, 2133, 2147
Hpy188III	TCNNGA	9 cut(s)	368, 652, 923, 1514, 1788, 1799, 1864, 1984, 1996
Hpy8I	GTNNAC	7 cut(s)	378, 711, 1352, 1547, 2096, 2133, 2147
Hpy99I	CGWCG	4 cut(s)	44, 56, 74, 402
HpyCH4III	ACNGT	3 cut(s)	1187, 1276, 1980
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 359, 403, 805, 916, 1308, 1322
Hsp92I	GRCGYC	2 cut(s)	339, 397
Hsp92II	CATG	9 cut(s)	268, 638, 655, 824, 1529, 1619, 1626, 1727, 1802
HspAI	GCGC	1 cut(s)	419
Kpn2I	TCCGGA	1 cut(s)	1863
Kzo9I	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
LmnI	GCTCC	2 cut(s)	332, 989
Lsp1109I	GCAGC	6 cut(s)	24, 337, 556, 1303, 1813, 2191
LweI	GCATC	4 cut(s)	277, 928, 1346, 2209
MaeI	CTAG	3 cut(s)	1079, 2190, 2246
MaeIII	GTNAC	3 cut(s)	555, 894, 1974
MalI	GATC	7 cut(s)	155, 162, 973, 1212, 1509, 1518, 2031
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
MboII	GAAGA	8 cut(s)	167, 437, 569, 1002, 1031, 1262, 1726, 2039
MfeI	CAATTG	2 cut(s)	605, 1359
MflI	RGATCY	2 cut(s)	1210, 2029
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	323
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	4 cut(s)	263, 716, 863, 1982
MmeI	TCCRAC	5 cut(s)	63, 136, 354, 1721, 2062
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	2109
MroI	TCCGGA	1 cut(s)	1863
MroXI	GAANNNNTTC	1 cut(s)	1991
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	7 cut(s)	119, 534, 864, 1062, 1925, 1965, 2064
MslI	CAYNNNNRTG	1 cut(s)	1416
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	227, 1553
MspI	CCGG	2 cut(s)	32, 1864
MspR9I	CCNGG	2 cut(s)	251, 427
MunI	CAATTG	2 cut(s)	605, 1359
Mva1269I	GAATGC	1 cut(s)	1562
MvaI	CCWGG	2 cut(s)	251, 427
MwoI	GCNNNNNNNGC	7 cut(s)	287, 359, 403, 805, 916, 1308, 1322
NdeII	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
NlaIII	CATG	9 cut(s)	268, 638, 655, 824, 1529, 1619, 1626, 1727, 1802
NlaIV	GGNNCC	4 cut(s)	241, 1212, 1366, 1745
NmuCI	GTSAC	2 cut(s)	894, 1974
NsiI	ATGCAT	1 cut(s)	2109
NspI	RCATGY	2 cut(s)	1529, 1626
NspV	TTCGAA	1 cut(s)	693
PaeI	GCATGC	1 cut(s)	1626
PagI	TCATGA	2 cut(s)	651, 1798
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	1562
PdmI	GAANNNNTTC	1 cut(s)	1991
PfeI	GAWTC	8 cut(s)	7, 35, 410, 430, 846, 1391, 1847, 1853
PflFI	GACNNNGTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	1361
PleI	GAGTC	4 cut(s)	262, 715, 862, 1981
PpsI	GAGTC	4 cut(s)	262, 715, 862, 1981
Psp6I	CCWGG	2 cut(s)	249, 425
PspGI	CCWGG	2 cut(s)	249, 425
PspN4I	GGNNCC	4 cut(s)	241, 1212, 1366, 1745
PspPI	GGNCC	3 cut(s)	240, 959, 2262
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	1210, 2029
PsyI	GACNNNGTC	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	1553
RsaI	GTAC	3 cut(s)	969, 1204, 1376
RsaNI	GTAC	3 cut(s)	968, 1203, 1375
RseI	CAYNNNNRTG	1 cut(s)	1416
SaqAI	TTAA	7 cut(s)	119, 534, 864, 1062, 1925, 1965, 2064
Sau3AI	GATC	7 cut(s)	153, 160, 971, 1210, 1507, 1516, 2029
Sau96I	GGNCC	3 cut(s)	240, 959, 2262
SchI	GAGTC	4 cut(s)	263, 716, 863, 1982
ScrFI	CCNGG	2 cut(s)	251, 427
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	4 cut(s)	277, 928, 1346, 2209
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	693
SinI	GGWCC	2 cut(s)	240, 959
SmiMI	CAYNNNNRTG	1 cut(s)	1416
SphI	GCATGC	1 cut(s)	1626
SsiI	CCGC	9 cut(s)	60, 81, 225, 243, 246, 315, 676, 910, 1300
SspMI	CTAG	3 cut(s)	1079, 2190, 2246
StyD4I	CCNGG	2 cut(s)	249, 425
StyI	CCWWGG	3 cut(s)	258, 715, 1078
TaaI	ACNGT	3 cut(s)	1187, 1276, 1980
TaqI	TCGA	3 cut(s)	152, 408, 693
TatI	WGTACW	2 cut(s)	1202, 1374
TauI	GCSGC	4 cut(s)	83, 227, 248, 913
TfiI	GAWTC	8 cut(s)	7, 35, 410, 430, 846, 1391, 1847, 1853
Tru1I	TTAA	7 cut(s)	119, 534, 864, 1062, 1925, 1965, 2064
Tru9I	TTAA	7 cut(s)	119, 534, 864, 1062, 1925, 1965, 2064
TscAI	CASTG	7 cut(s)	340, 351, 480, 558, 890, 1287, 2301
TseFI	GTSAC	2 cut(s)	894, 1974
TseI	GCWGC	6 cut(s)	12, 350, 569, 1316, 1826, 2179
Tsp45I	GTSAC	2 cut(s)	894, 1974
TspGWI	ACGGA	1 cut(s)	2084
TspRI	CASTG	7 cut(s)	340, 351, 480, 558, 890, 1287, 2301
Tth111I	GACNNNGTC	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	1361
VneI	GTGCAC	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	240, 959
XagI	CCTNNNNNAGG	1 cut(s)	1082
XapI	RAATTY	3 cut(s)	469, 1058, 1813
XceI	RCATGY	2 cut(s)	1529, 1626
XmaJI	CCTAGG	1 cut(s)	1078
XmnI	GAANNNNTTC	1 cut(s)	1991
XspI	CTAG	3 cut(s)	1079, 2190, 2246
Zsp2I	ATGCAT	1 cut(s)	2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.