MD13G1265800.v1.1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017047
Physical Location & Seq
Forward (+)
34303293 .. 34303853
561 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1265800.v1.1.491

Sequence Viewer

Length: 561 bp
ATGAAGGCACAATTCCTCTTTATCCTCTTTGCTCTCTACCTTACTGACGTCGGCTCAGCTACTTCTGCACATGAACAAAAGCCGAACAACGAGACCGTCTGGAGGGTCTCAAAGCAACTATGCTGGGGTTGCATAGGAGAGTCCTTAGAATTTTTGTTCCAAAACAATTTGGTGAGGGCAGCAAAGTGGGAGATGCCATTGATGTGGGACTTTCAACTCGAGAAATATGCTAGGTGGTGGGCAGGCCAGAGAAAATCCGATTGCAAATTGCAGCATTCGTTCCCGGAAGACGGGTTCAAGCTAGGAGAAAACATATACTGGGGCAGCGGCTCGACATGGACTCCAAGCGACGCAGTGAAGACATGGGCTGCTGAAGAGAAGTACTACAGTTACATGACGAATACGTGCGAGGCTGGTCAAATGTGCGGACATTATACTCAAATTGTGTGGAAGACTACGACGAGACTCGGGTGTGCTAGGGTTGTGTGTGACGATGGAGATGTGTTTATGACTTGTAATTATGATCCTCCTGGGAATTATATTGGTGAGAGGCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

187

Amino Acids

21.53

Weight (kDa)

5.63

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 56 - 174 7.7e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25780
fragaria_vesca FvH4_4g09940
malus_domestica MD13G1265800.v1.1
prunus_persica Prupe.1G091400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0403511
rosa_laevigata RLG00000008971
rosa_multiflora Rmu_sc0007727.1_g000036
rosa_roxburghii Rroxscaffold_5G00348180
rosa_rugosa Rorug04G0043900
rosa_samantha Rh4AG119300 Rh4CG127200 Rh4DG112000
rosa_wichuraiana Rw4G009680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 2 cut(s) 327, 426
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 2 cut(s) 102, 290
AgsI TTSAA 2 cut(s) 215, 298
AjnI CCWGG 1 cut(s) 529
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 2 cut(s) 59, 301
AluI AGCT 2 cut(s) 59, 301
Alw26I GTCTC 3 cut(s) 86, 112, 457
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 2 cut(s) 218, 467
AoxI GGCC 2 cut(s) 244, 551
ApeKI GCWGC 4 cut(s) 179, 271, 324, 368
ApoI RAATTY 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 184, 557
AvaI CYCGRG 2 cut(s) 218, 467
BbsI GAAGAC 3 cut(s) 294, 365, 458
BbvI GCAGC 4 cut(s) 191, 283, 336, 355
BccI CCATC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 531
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 86, 112, 457
BfaI CTAG 4 cut(s) 231, 302, 477, 559
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 5 cut(s) 180, 272, 325, 328, 369
BlpI GCTNAGC 1 cut(s) 55
BlsI GCNGC 5 cut(s) 181, 273, 326, 329, 370
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 284, 531
BmeT110I CYCGRG 2 cut(s) 218, 467
BmrFI CCNGG 2 cut(s) 284, 531
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 3 cut(s) 294, 365, 458
BpmI CTGGAG 1 cut(s) 121
Bpu1102I GCTNAGC 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 2 cut(s) 86, 112
BsaJI CCNNGG 1 cut(s) 530
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 290
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 102, 290
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 191, 283, 336, 355
BseYI CCCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 2 cut(s) 246, 553
BsiHKCI CYCGRG 2 cut(s) 218, 467
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 102, 290
BsmAI GTCTC 3 cut(s) 86, 112, 457
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 246, 553
Bso31I GGTCTC 2 cut(s) 86, 112
BsoBI CYCGRG 2 cut(s) 218, 467
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 55
BspACI CCGC 2 cut(s) 327, 426
BspANI GGCC 2 cut(s) 246, 553
BspCNI CTCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 518
BspTNI GGTCTC 2 cut(s) 86, 112
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 97, 389
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 55, 145
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 3 cut(s) 86, 112, 457
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 2 cut(s) 65, 129
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 282, 529
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 191, 283, 336, 355
BstV2I GAAGAC 3 cut(s) 294, 365, 458
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 246, 553
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 244
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CviAII CATG 4 cut(s) 71, 336, 363, 394
CviJI RGCY 9 cut(s) 54, 59, 82, 246, 301, 330, 368, 413, 553
CviKI_1 RGCY 9 cut(s) 54, 59, 82, 246, 301, 330, 368, 413, 553
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 2 cut(s) 55, 145
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco31I GGTCTC 2 cut(s) 86, 112
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 2 cut(s) 218, 467
EcoRII CCWGG 1 cut(s) 529
FaeI CATG 4 cut(s) 74, 339, 366, 397
FaqI GGGAC 1 cut(s) 221
FatI CATG 4 cut(s) 70, 335, 362, 393
Fnu4HI GCNGC 5 cut(s) 180, 272, 325, 328, 369
Fsp4HI GCNGC 5 cut(s) 180, 272, 325, 328, 369
FspBI CTAG 4 cut(s) 231, 302, 477, 559
GluI GCNGC 5 cut(s) 180, 272, 325, 328, 369
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 246, 553
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 74, 339, 366, 397
HinfI GANTC 3 cut(s) 140, 340, 465
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 184, 557
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 100, 220
Hpy99I CGWCG 3 cut(s) 53, 353, 463
HpyCH4III ACNGT 2 cut(s) 97, 389
HpyCH4IV ACGT 2 cut(s) 48, 404
HpyCH4V TGCA 4 cut(s) 68, 132, 264, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 129
HpyF3I CTNAG 2 cut(s) 55, 145
HpySE526I ACGT 2 cut(s) 48, 404
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 74, 339, 366, 397
Kzo9I GATC 1 cut(s) 523
LpnPI CCDG 9 cut(s) 85, 109, 228, 260, 297, 304, 399, 516, 543
Lsp1109I GCAGC 4 cut(s) 191, 283, 336, 355
LweI GCATC 1 cut(s) 183
MaeI CTAG 4 cut(s) 231, 302, 477, 559
MaeII ACGT 2 cut(s) 48, 404
MaeIII GTNAC 2 cut(s) 389, 488
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 4 cut(s) 299, 370, 386, 463
MluCI AATT 7 cut(s) 11, 149, 166, 266, 441, 517, 535
MlyI GAGTC 3 cut(s) 149, 334, 459
MnlI CCTC 7 cut(s) 26, 35, 96, 168, 403, 537, 543
MslI CAYNNNNRTG 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 284, 531
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 65, 129
NciI CCSGG 1 cut(s) 284
NdeII GATC 1 cut(s) 523
NlaIII CATG 4 cut(s) 74, 339, 366, 397
NmuCI GTSAC 1 cut(s) 488
PaeR7I CTCGAG 1 cut(s) 218
PctI GAATGC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 5 cut(s) 181, 273, 326, 329, 370
PleI GAGTC 3 cut(s) 148, 334, 459
PpsI GAGTC 3 cut(s) 148, 334, 459
Ppu21I YACGTR 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 1 cut(s) 529
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 1 cut(s) 202
SatI GCNGC 5 cut(s) 180, 272, 325, 328, 369
Sau3AI GATC 1 cut(s) 523
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 3 cut(s) 149, 334, 459
ScrFI CCNGG 2 cut(s) 284, 531
SetI ASST 6 cut(s) 42, 51, 61, 236, 303, 407
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 7 cut(s) 11, 149, 166, 266, 441, 517, 535
SsiI CCGC 2 cut(s) 327, 426
SspMI CTAG 4 cut(s) 231, 302, 477, 559
StyD4I CCNGG 2 cut(s) 282, 529
TaaI ACNGT 2 cut(s) 97, 389
TaiI ACGT 2 cut(s) 51, 407
TaqI TCGA 2 cut(s) 219, 332
TasI AATT 7 cut(s) 11, 149, 166, 266, 441, 517, 535
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 330
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 4 cut(s) 179, 271, 324, 368
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 17, 87
TspRI CASTG 1 cut(s) 360
XapI RAATTY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 4 cut(s) 231, 302, 477, 559
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.