Rorug04G0043900

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017047
Physical Location & Seq
Reverse (-)
6833587 .. 6836223
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0043900.1

Sequence Viewer

Length: 480 bp
ATGGGGTTCTTCTCCTTCTTCGGCCGCGTCCTCTTCGCCTCCATCTTCATCCTCTCCGCTTGGCAAGCGTTCAATGAATTTGGTACTGATGGAGGACCTGCTGCAAAGGAGTTGGCTCCCAAATTTTCCGTTTTAAAAGATCACCTGTCTTCGAAACTGGGCTTTGCATTACCGGATGTAGATCCTATTCATTTAGCTGGAGCTGTGATAGCTCTAAAAGGTCTGGGAGGCATTCTATTTGTACTTAACAGTAATATTGGAGCTCTTCTCCTGATTATTCAATTGGCATTTACCACTCCCCTCATCTATGATTTCTACAACTTTAGTCCAGACACTCCCAAATTTGGTGTACTCCTGAATGATTTCTTGCAGCAAGCGGCACTTGTTGGTGCACTGTTTTTCTTCATCGGGATGAAGAACTCTATTTCTAAGAGGGGACAAATCACCAAGAAGAAGATCCACAAAACCAAAACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

9.7

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HR_lesion PF05514 1 - 138 2.6e-52 HR-like lesion-inducing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25780
fragaria_vesca FvH4_4g09940
malus_domestica MD13G1265800.v1.1
prunus_persica Prupe.1G091400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0403511
rosa_laevigata RLG00000008971
rosa_multiflora Rmu_sc0007727.1_g000036
rosa_roxburghii Rroxscaffold_5G00348180
rosa_rugosa Rorug04G0043900
rosa_samantha Rh4AG119300 Rh4CG127200 Rh4DG112000
rosa_wichuraiana Rw4G009680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 25, 57, 377
AclWI GGATC 2 cut(s) 176, 451
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 3 cut(s) 77, 122, 341
AfaI GTAC 3 cut(s) 85, 243, 351
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 73, 281
AluBI AGCT 4 cut(s) 197, 203, 212, 263
AluI AGCT 4 cut(s) 197, 203, 212, 263
Alw21I GWGCWC 2 cut(s) 265, 394
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 2 cut(s) 176, 451
AoxI GGCC 1 cut(s) 22
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 101, 370
ApoI RAATTY 3 cut(s) 77, 122, 341
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 134, 436
AsuII TTCGAA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 2 cut(s) 265, 394
BbvI GCAGC 2 cut(s) 88, 382
BccI CCATC 2 cut(s) 50, 83
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 4 cut(s) 25, 102, 371, 378
BlsI GCNGC 4 cut(s) 26, 103, 372, 379
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpmI CTGGAG 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 162, 478
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 3 cut(s) 48, 181, 417
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 162, 478
BseSI GKGCMC 1 cut(s) 394
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 88, 382
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 265, 394
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 265, 394
Bsp143I GATC 3 cut(s) 139, 181, 456
BspACI CCGC 3 cut(s) 25, 57, 377
BspANI GGCC 1 cut(s) 24
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 2 cut(s) 176, 451
BspQI GCTCTTC 1 cut(s) 270
BspT104I TTCGAA 1 cut(s) 152
BsrI ACTGG 2 cut(s) 162, 478
BssMI GATC 3 cut(s) 139, 181, 456
Bst4CI ACNGT 2 cut(s) 251, 396
Bst6I CTCTTC 2 cut(s) 38, 270
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 66, 375
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 48, 181, 417
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 142, 184, 459
BstMBI GATC 3 cut(s) 139, 181, 456
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 65, 209
BstSLI GKGCMC 1 cut(s) 394
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 88, 382
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 181, 456
BstYI RGATCY 2 cut(s) 181, 456
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 3 cut(s) 48, 181, 417
BtsIMutI CAGTG 1 cut(s) 392
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 66, 375
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 16
Csp6I GTAC 3 cut(s) 84, 242, 350
CviJI RGCY 7 cut(s) 24, 116, 162, 197, 203, 212, 263
CviKI_1 RGCY 7 cut(s) 24, 116, 162, 197, 203, 212, 263
CviQI GTAC 3 cut(s) 84, 242, 350
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 141, 183, 458
DpnII GATC 3 cut(s) 139, 181, 456
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 38, 270
EarI CTCTTC 2 cut(s) 38, 270
Ecl136II GAGCTC 1 cut(s) 263
EclXI CGGCCG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 265
FaiI YATR 1 cut(s) 309
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 25, 102, 371, 378
FokI GGATG 3 cut(s) 35, 188, 424
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 4 cut(s) 25, 102, 371, 378
GluI GCNGC 4 cut(s) 25, 102, 371, 378
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 16
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 134, 436
Hpy166II GTNNAC 2 cut(s) 350, 392
Hpy188III TCNNGA 4 cut(s) 271, 329, 355, 409
Hpy8I GTNNAC 2 cut(s) 350, 392
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 251, 396
HpyCH4V TGCA 4 cut(s) 104, 167, 370, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 209
HpyF3I CTNAG 1 cut(s) 429
Kzo9I GATC 3 cut(s) 139, 181, 456
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 121, 200, 260
Lsp1109I GCAGC 2 cut(s) 88, 382
MalI GATC 3 cut(s) 141, 183, 458
MboI GATC 3 cut(s) 139, 181, 456
MboII GAAGA 9 cut(s) 10, 25, 37, 141, 257, 394, 427, 463, 466
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 2 cut(s) 181, 456
MhlI GDGCHC 2 cut(s) 265, 394
MluCI AATT 4 cut(s) 77, 122, 281, 341
MnlI CCTC 7 cut(s) 41, 49, 62, 86, 221, 311, 426
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 134, 246
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 231
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 65, 209
NdeII GATC 3 cut(s) 139, 181, 456
NlaIV GGNNCC 1 cut(s) 117
NspV TTCGAA 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 270
PctI GAATGC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 362
PkrI GCNGC 4 cut(s) 26, 103, 372, 379
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 2 cut(s) 181, 456
RsaI GTAC 3 cut(s) 85, 243, 351
RsaNI GTAC 3 cut(s) 84, 242, 350
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 134, 246
SatI GCNGC 4 cut(s) 25, 102, 371, 378
Sau3AI GATC 3 cut(s) 139, 181, 456
Sau96I GGNCC 1 cut(s) 95
SduI GDGCHC 2 cut(s) 265, 394
SetI ASST 7 cut(s) 100, 147, 199, 205, 214, 223, 265
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 4 cut(s) 77, 122, 281, 341
SsiI CCGC 3 cut(s) 25, 57, 377
SspI AATATT 1 cut(s) 256
SstI GAGCTC 1 cut(s) 265
TaaI ACNGT 2 cut(s) 251, 396
TaqI TCGA 1 cut(s) 152
TasI AATT 4 cut(s) 77, 122, 281, 341
TatI WGTACW 2 cut(s) 241, 349
TauI GCSGC 2 cut(s) 27, 380
Tru1I TTAA 2 cut(s) 134, 246
Tru9I TTAA 2 cut(s) 134, 246
TscAI CASTG 1 cut(s) 399
TseI GCWGC 2 cut(s) 101, 370
TspDTI ATGAA 5 cut(s) 37, 90, 179, 394, 428
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 399
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 3 cut(s) 77, 122, 341
XmnI GAANNNNTTC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.