Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014407

Physical Location & Seq

Genomic Coordinates Forward (+)

13704478 .. 13710859

Gene Structure 6382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1092100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGCAGCATCGGAACAGGTTACGATCTCTCCGTCACCACATTCTCCCCCGACGGCCGCGTCTTCCAGATCGAGTACGCCGCCAAAGCCGTCGACAACTCCGGGACTGTCATTGGGATCAAATGTAAGGACGGCGTTGTTATGGGTGTGGAAAAGCTCATAGCGTCGAAGATGATGCTGCCCGGTTCTAATAGAAGGATTCATTCAGTTCATCGCCACTCCGGGATGGCAGTGGCAGGATTAGCTGCAGATGGTAGGCAAATTGTTGCTAGGACCAAGTCTGAAGCCACCAACTATGAAAGTGTGTATGGTGAACAGATTCCTGTTAAGGAACTTGCTGAACGTGTTGCTAGTTATGTGCATTTGTGTACACTATATTGGTGGCTCAGACCTTTTGGATGTGGGATAATCCTTGGTGGTTATGACAGAGATGGGCCACAATTGTACATGGTTGAACCTTCTGGTGTTTCTTATAGGTATTTTGGTGCTGCAATTGGAAAGGGCAGGCAGGCTGCCAAGACAGAGATTGAAAAGTTGAAGCTTTCGGAGTTGACTTGTCGGCAAGGAGTTATTGAAGTAGCCAAGATCATTTATGGAATTCATGATGAGGCAAAGGACAAGGAATTTGAGTTAGAAATGAGCTGGGTCTGTGACGAATCAAACCGTCTGCATCAGAAGGTTCCAGATGAGCTTCTAGAGGAAGCAAAGGCAGCGGCTAAAGCAGCATTGGAAGATATGGATGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.37

Weight (kDa)

5.76

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	8 - 30	2.2e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 216	7.9e-52	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27020 AT2G27020
fragaria_vesca	FvH4_5g23670
malus_domestica	MD14G1092100.v1.1
prunus_persica	Prupe.7G022800_v2.0.a1 Prupe.7G022800_v2.0.a1
pyrus_communis	pycom14g08930 pycom14g08970
rosa_chinensis	RchiOBHm_Chr7g0212971
rosa_laevigata	RLG00000002841
rosa_multiflora	Rmu_co8304723.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246370
rosa_samantha	Rh7AG269800 Rh7BG265200 Rh7CG289000 Rh7DG277900
rosa_wichuraiana	Rw7G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	58, 81, 713
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	597, 623
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	77, 370, 446
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	455, 530, 538, 575
AluBI	AGCT	5 cut(s)	157, 245, 541, 642, 691
AluI	AGCT	5 cut(s)	157, 245, 541, 642, 691
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	55, 434
ApeKI	GCWGC	7 cut(s)	6, 178, 245, 488, 512, 710, 722
ApoI	RAATTY	2 cut(s)	597, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	273, 434
AsuC2I	CCSGG	3 cut(s)	103, 183, 223
AsuHPI	GGTGA	2 cut(s)	28, 323
AvaII	GGWCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	7 cut(s)	18, 165, 232, 475, 499, 722, 734
BccI	CCATC	3 cut(s)	220, 245, 425
BceAI	ACGGC	3 cut(s)	70, 74, 148
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BcnI	CCSGG	3 cut(s)	103, 183, 223
BfaI	CTAG	3 cut(s)	270, 351, 695
BfmI	CTRYAG	1 cut(s)	246
Bme1390I	CCNGG	3 cut(s)	103, 183, 223
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	273, 434
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	3 cut(s)	103, 183, 223
BmsI	GCATC	4 cut(s)	18, 165, 679, 730
BpiI	GAAGAC	1 cut(s)	55
BpuMI	CCSGG	3 cut(s)	103, 183, 223
BsaJI	CCNNGG	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	3 cut(s)	231, 404, 745
BseMII	CTCAG	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	7 cut(s)	18, 165, 232, 475, 499, 722, 734
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	57, 436
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	102, 183, 222
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	57, 436
Bsp1407I	TGTACA	2 cut(s)	368, 444
Bsp143I	GATC	4 cut(s)	25, 69, 117, 585
BspACI	CCGC	3 cut(s)	58, 81, 713
BspANI	GGCC	2 cut(s)	57, 436
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	681
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	125
BsrGI	TGTACA	2 cut(s)	368, 444
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	4 cut(s)	25, 69, 117, 585
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	109, 665
BstAUI	TGTACA	2 cut(s)	368, 444
BstC8I	GCNNGC	2 cut(s)	506, 510
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	231, 404, 745
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	4 cut(s)	28, 72, 120, 588
BstMBI	GATC	4 cut(s)	25, 69, 117, 585
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 242, 710, 719, 722
BstSCI	CCNGG	3 cut(s)	101, 181, 221
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	7 cut(s)	18, 165, 232, 475, 499, 722, 734
BstV2I	GAAGAC	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 436
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	231, 404, 745
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	506, 510
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	273, 434
CseI	GACGC	2 cut(s)	49, 153
Csp6I	GTAC	3 cut(s)	76, 369, 445
CviAII	CATG	2 cut(s)	448, 602
CviQI	GTAC	3 cut(s)	76, 369, 445
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	4 cut(s)	27, 71, 119, 587
DpnII	GATC	4 cut(s)	25, 69, 117, 585
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	451, 605
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	447, 601
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	2 cut(s)	238, 411
FspBI	CTAG	3 cut(s)	270, 351, 695
GsaI	CCCAGC	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	57, 436
HapII	CCGG	3 cut(s)	102, 183, 222
HgaI	GACGC	2 cut(s)	49, 153
Hin1II	CATG	2 cut(s)	451, 605
HincII	GTYRAC	2 cut(s)	94, 552
HindII	GTYRAC	2 cut(s)	94, 552
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	3 cut(s)	199, 319, 656
HpaII	CCGG	3 cut(s)	102, 183, 222
HphI	GGTGA	2 cut(s)	28, 323
Hpy166II	GTNNAC	5 cut(s)	94, 314, 369, 371, 552
Hpy188I	TCNGA	5 cut(s)	14, 283, 389, 547, 675
Hpy188III	TCNNGA	4 cut(s)	67, 602, 683, 695
Hpy8I	GTNNAC	5 cut(s)	94, 314, 369, 371, 552
Hpy99I	CGWCG	3 cut(s)	56, 95, 169
HpyAV	CCTTC	3 cut(s)	189, 468, 670
HpyCH4III	ACNGT	2 cut(s)	109, 665
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	248, 361, 491, 670, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 242, 710, 719, 722
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	451, 605
Kzo9I	GATC	4 cut(s)	25, 69, 117, 585
Lsp1109I	GCAGC	7 cut(s)	18, 165, 232, 475, 499, 722, 734
LweI	GCATC	4 cut(s)	18, 165, 679, 730
MaeI	CTAG	3 cut(s)	270, 351, 695
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	3 cut(s)	20, 34, 650
MalI	GATC	4 cut(s)	27, 71, 119, 587
MboI	GATC	4 cut(s)	25, 69, 117, 585
MboII	GAAGA	3 cut(s)	55, 181, 743
MfeI	CAATTG	2 cut(s)	440, 492
MluCI	AATT	5 cut(s)	261, 440, 492, 597, 623
MnlI	CCTC	2 cut(s)	601, 691
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	327, 748
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	3 cut(s)	102, 183, 222
MspR9I	CCNGG	3 cut(s)	103, 183, 223
MunI	CAATTG	2 cut(s)	440, 492
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	5 cut(s)	86, 242, 710, 719, 722
NciI	CCSGG	3 cut(s)	103, 183, 223
NdeII	GATC	4 cut(s)	25, 69, 117, 585
NlaIII	CATG	2 cut(s)	451, 605
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	2 cut(s)	34, 650
PagI	TCATGA	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	199, 319, 656
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	2 cut(s)	101, 221
PspFI	CCCAGC	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	2 cut(s)	273, 434
PstI	CTGCAG	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	277
RsaI	GTAC	3 cut(s)	77, 370, 446
RsaNI	GTAC	3 cut(s)	76, 369, 445
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	327, 748
Sau3AI	GATC	4 cut(s)	25, 69, 117, 585
Sau96I	GGNCC	2 cut(s)	273, 434
ScrFI	CCNGG	3 cut(s)	103, 183, 223
SfaNI	GCATC	4 cut(s)	18, 165, 679, 730
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	5 cut(s)	261, 440, 492, 597, 623
SsiI	CCGC	3 cut(s)	58, 81, 713
SspMI	CTAG	3 cut(s)	270, 351, 695
StyD4I	CCNGG	3 cut(s)	101, 181, 221
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	109, 665
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	72, 93, 167
TasI	AATT	5 cut(s)	261, 440, 492, 597, 623
TatI	WGTACW	2 cut(s)	368, 444
TauI	GCSGC	3 cut(s)	60, 83, 716
TfiI	GAWTC	3 cut(s)	199, 319, 656
Tru1I	TTAA	2 cut(s)	327, 748
Tru9I	TTAA	2 cut(s)	327, 748
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	34, 650
TseI	GCWGC	7 cut(s)	6, 178, 245, 488, 512, 710, 722
Tsp45I	GTSAC	2 cut(s)	34, 650
TspDTI	ATGAA	4 cut(s)	191, 200, 312, 590
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	2 cut(s)	597, 623
XbaI	TCTAGA	1 cut(s)	694
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	270, 351, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.